tcga normalized rna-seq gene expression data from 33 cancer types (Broad Institute Inc)
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Broad Institute Inc
tcga normalized rna-seq gene expression data from 33 cancer types
Tcga Normalized Rna Seq Gene Expression Data From 33 Cancer Types, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+data/tcga+rna+seq+data/pmc06802116-254-8-14
Average 90 stars, based on 1 article reviews
Tcga Normalized Rna Seq Gene Expression Data From 33 Cancer Types, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/rna-seq+data/tcga+rna+seq+data/pmc06802116-254-8-14
Average 90 stars, based on 1 article reviews
tcga normalized rna-seq gene expression data from 33 cancer types - by Bioz Stars,
2026-11
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Activation Assay:Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were the Broad Institute Genome Data Analysis Center Firehose database ( https://gdac.broadinstitute.org/ ) and Genomic Data Commons (GDC) data portal ( https://portal.gdc.cancer.gov/projects/TCGABRCA ) Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines Article Snippet: Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy. Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were downloaded from the Broad Institute Genome Data Analysis Center Firehose database (https://gdac. broadinstitute.org/) and Genomic Data Commons (GDC) data portal (https://portal.gdc.cancer.gov/projects/TCGABRCA). Article Title: Identification of DDX60 as a Regulator of MHC-I Class Molecules in Colorectal Cancer. Article Snippet: The TCGA mRNA-sequencing data of CRC was obtained from the Broad Institute FireBrowse portal [36]. Article Title: UnitedMet harnesses RNA-metabolite covariation to impute metabolite levels in clinical samples. Article Snippet: We downloaded paired RNA-seq, WES and clinical data of 1,020 RCC tumor and adjacent normal samples in TCGA KIPAN from the Genome Data Analysis Center (GDAC) at Broad Institute. Article Title: Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR Article Snippet: We downloaded TCGA RNA-seq data (gene read counts) from the BROAD Institute TCGA GDAC at firebrowse.org (March 2019). Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines. Article Snippet: Signaling pathway activation analysis was adapted from Tan et al.6 Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer Article Snippet: The RNA Sequencing:Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were the Broad Institute Genome Data Analysis Center Firehose database ( https://gdac.broadinstitute.org/ ) and Genomic Data Commons (GDC) data portal ( https://portal.gdc.cancer.gov/projects/TCGABRCA ) Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines Article Snippet: Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy. Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were downloaded from the Broad Institute Genome Data Analysis Center Firehose database (https://gdac. broadinstitute.org/) and Genomic Data Commons (GDC) data portal (https://portal.gdc.cancer.gov/projects/TCGABRCA). Article Title: Identification of DDX60 as a Regulator of MHC-I Class Molecules in Colorectal Cancer. Article Snippet: The TCGA mRNA-sequencing data of CRC was obtained from the Broad Institute FireBrowse portal [36]. Article Title: UnitedMet harnesses RNA-metabolite covariation to impute metabolite levels in clinical samples. Article Snippet: We downloaded paired RNA-seq, WES and clinical data of 1,020 RCC tumor and adjacent normal samples in TCGA KIPAN from the Genome Data Analysis Center (GDAC) at Broad Institute. Article Title: Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR Article Snippet: We downloaded TCGA RNA-seq data (gene read counts) from the BROAD Institute TCGA GDAC at firebrowse.org (March 2019). Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines. Article Snippet: Signaling pathway activation analysis was adapted from Tan et al.6 Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer Article Snippet: The Activity Assay:Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were the Broad Institute Genome Data Analysis Center Firehose database ( https://gdac.broadinstitute.org/ ) and Genomic Data Commons (GDC) data portal ( https://portal.gdc.cancer.gov/projects/TCGABRCA ) Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines Article Snippet: Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy. Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were downloaded from the Broad Institute Genome Data Analysis Center Firehose database (https://gdac. broadinstitute.org/) and Genomic Data Commons (GDC) data portal (https://portal.gdc.cancer.gov/projects/TCGABRCA). Article Title: Identification of DDX60 as a Regulator of MHC-I Class Molecules in Colorectal Cancer. Article Snippet: The TCGA mRNA-sequencing data of CRC was obtained from the Broad Institute FireBrowse portal [36]. Article Title: UnitedMet harnesses RNA-metabolite covariation to impute metabolite levels in clinical samples. Article Snippet: We downloaded paired RNA-seq, WES and clinical data of 1,020 RCC tumor and adjacent normal samples in TCGA KIPAN from the Genome Data Analysis Center (GDAC) at Broad Institute. Article Title: Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR Article Snippet: We downloaded TCGA RNA-seq data (gene read counts) from the BROAD Institute TCGA GDAC at firebrowse.org (March 2019). Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines. Article Snippet: Signaling pathway activation analysis was adapted from Tan et al.6 Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer Article Snippet: The Microarray:Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were the Broad Institute Genome Data Analysis Center Firehose database ( https://gdac.broadinstitute.org/ ) and Genomic Data Commons (GDC) data portal ( https://portal.gdc.cancer.gov/projects/TCGABRCA ) Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines Article Snippet: Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy. Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were downloaded from the Broad Institute Genome Data Analysis Center Firehose database (https://gdac. broadinstitute.org/) and Genomic Data Commons (GDC) data portal (https://portal.gdc.cancer.gov/projects/TCGABRCA). Article Title: Identification of DDX60 as a Regulator of MHC-I Class Molecules in Colorectal Cancer. Article Snippet: The TCGA mRNA-sequencing data of CRC was obtained from the Broad Institute FireBrowse portal [36]. Article Title: UnitedMet harnesses RNA-metabolite covariation to impute metabolite levels in clinical samples. Article Snippet: We downloaded paired RNA-seq, WES and clinical data of 1,020 RCC tumor and adjacent normal samples in TCGA KIPAN from the Genome Data Analysis Center (GDAC) at Broad Institute. Article Title: Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR Article Snippet: We downloaded TCGA RNA-seq data (gene read counts) from the BROAD Institute TCGA GDAC at firebrowse.org (March 2019). Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines. Article Snippet: Signaling pathway activation analysis was adapted from Tan et al.6 Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer Article Snippet: The Expressing:Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were the Broad Institute Genome Data Analysis Center Firehose database ( https://gdac.broadinstitute.org/ ) and Genomic Data Commons (GDC) data portal ( https://portal.gdc.cancer.gov/projects/TCGABRCA ) Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines Article Snippet: Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy. Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were downloaded from the Broad Institute Genome Data Analysis Center Firehose database (https://gdac. broadinstitute.org/) and Genomic Data Commons (GDC) data portal (https://portal.gdc.cancer.gov/projects/TCGABRCA). Article Title: Identification of DDX60 as a Regulator of MHC-I Class Molecules in Colorectal Cancer. Article Snippet: The TCGA mRNA-sequencing data of CRC was obtained from the Broad Institute FireBrowse portal [36]. Article Title: UnitedMet harnesses RNA-metabolite covariation to impute metabolite levels in clinical samples. Article Snippet: We downloaded paired RNA-seq, WES and clinical data of 1,020 RCC tumor and adjacent normal samples in TCGA KIPAN from the Genome Data Analysis Center (GDAC) at Broad Institute. Article Title: Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR Article Snippet: We downloaded TCGA RNA-seq data (gene read counts) from the BROAD Institute TCGA GDAC at firebrowse.org (March 2019). Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines. Article Snippet: Signaling pathway activation analysis was adapted from Tan et al.6 Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer Article Snippet: The Immunofluorescence:Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were the Broad Institute Genome Data Analysis Center Firehose database ( https://gdac.broadinstitute.org/ ) and Genomic Data Commons (GDC) data portal ( https://portal.gdc.cancer.gov/projects/TCGABRCA ) Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines Article Snippet: Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy. Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were downloaded from the Broad Institute Genome Data Analysis Center Firehose database (https://gdac. broadinstitute.org/) and Genomic Data Commons (GDC) data portal (https://portal.gdc.cancer.gov/projects/TCGABRCA). Article Title: Identification of DDX60 as a Regulator of MHC-I Class Molecules in Colorectal Cancer. Article Snippet: The TCGA mRNA-sequencing data of CRC was obtained from the Broad Institute FireBrowse portal [36]. Article Title: UnitedMet harnesses RNA-metabolite covariation to impute metabolite levels in clinical samples. Article Snippet: We downloaded paired RNA-seq, WES and clinical data of 1,020 RCC tumor and adjacent normal samples in TCGA KIPAN from the Genome Data Analysis Center (GDAC) at Broad Institute. Article Title: Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR Article Snippet: We downloaded TCGA RNA-seq data (gene read counts) from the BROAD Institute TCGA GDAC at firebrowse.org (March 2019). Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines. Article Snippet: Signaling pathway activation analysis was adapted from Tan et al.6 Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer Article Snippet: The Generated:Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were the Broad Institute Genome Data Analysis Center Firehose database ( https://gdac.broadinstitute.org/ ) and Genomic Data Commons (GDC) data portal ( https://portal.gdc.cancer.gov/projects/TCGABRCA ) Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines Article Snippet: Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy. Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were downloaded from the Broad Institute Genome Data Analysis Center Firehose database (https://gdac. broadinstitute.org/) and Genomic Data Commons (GDC) data portal (https://portal.gdc.cancer.gov/projects/TCGABRCA). Article Title: Identification of DDX60 as a Regulator of MHC-I Class Molecules in Colorectal Cancer. Article Snippet: The TCGA mRNA-sequencing data of CRC was obtained from the Broad Institute FireBrowse portal [36]. Article Title: UnitedMet harnesses RNA-metabolite covariation to impute metabolite levels in clinical samples. Article Snippet: We downloaded paired RNA-seq, WES and clinical data of 1,020 RCC tumor and adjacent normal samples in TCGA KIPAN from the Genome Data Analysis Center (GDAC) at Broad Institute. Article Title: Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR Article Snippet: We downloaded TCGA RNA-seq data (gene read counts) from the BROAD Institute TCGA GDAC at firebrowse.org (March 2019). Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines. Article Snippet: Signaling pathway activation analysis was adapted from Tan et al.6 Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer Article Snippet: The Construct:Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were the Broad Institute Genome Data Analysis Center Firehose database ( https://gdac.broadinstitute.org/ ) and Genomic Data Commons (GDC) data portal ( https://portal.gdc.cancer.gov/projects/TCGABRCA ) Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines Article Snippet: Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy. Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were downloaded from the Broad Institute Genome Data Analysis Center Firehose database (https://gdac. broadinstitute.org/) and Genomic Data Commons (GDC) data portal (https://portal.gdc.cancer.gov/projects/TCGABRCA). Article Title: Identification of DDX60 as a Regulator of MHC-I Class Molecules in Colorectal Cancer. Article Snippet: The TCGA mRNA-sequencing data of CRC was obtained from the Broad Institute FireBrowse portal [36]. Article Title: UnitedMet harnesses RNA-metabolite covariation to impute metabolite levels in clinical samples. Article Snippet: We downloaded paired RNA-seq, WES and clinical data of 1,020 RCC tumor and adjacent normal samples in TCGA KIPAN from the Genome Data Analysis Center (GDAC) at Broad Institute. Article Title: Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR Article Snippet: We downloaded TCGA RNA-seq data (gene read counts) from the BROAD Institute TCGA GDAC at firebrowse.org (March 2019). Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines. Article Snippet: Signaling pathway activation analysis was adapted from Tan et al.6 Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer Article Snippet: The Immunopeptidomics:Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were the Broad Institute Genome Data Analysis Center Firehose database ( https://gdac.broadinstitute.org/ ) and Genomic Data Commons (GDC) data portal ( https://portal.gdc.cancer.gov/projects/TCGABRCA ) Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines Article Snippet: Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy. Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were downloaded from the Broad Institute Genome Data Analysis Center Firehose database (https://gdac. broadinstitute.org/) and Genomic Data Commons (GDC) data portal (https://portal.gdc.cancer.gov/projects/TCGABRCA). Article Title: Identification of DDX60 as a Regulator of MHC-I Class Molecules in Colorectal Cancer. Article Snippet: The TCGA mRNA-sequencing data of CRC was obtained from the Broad Institute FireBrowse portal [36]. Article Title: UnitedMet harnesses RNA-metabolite covariation to impute metabolite levels in clinical samples. Article Snippet: We downloaded paired RNA-seq, WES and clinical data of 1,020 RCC tumor and adjacent normal samples in TCGA KIPAN from the Genome Data Analysis Center (GDAC) at Broad Institute. Article Title: Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR Article Snippet: We downloaded TCGA RNA-seq data (gene read counts) from the BROAD Institute TCGA GDAC at firebrowse.org (March 2019). Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines. Article Snippet: Signaling pathway activation analysis was adapted from Tan et al.6 Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer Article Snippet: The Comparison:Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were the Broad Institute Genome Data Analysis Center Firehose database ( https://gdac.broadinstitute.org/ ) and Genomic Data Commons (GDC) data portal ( https://portal.gdc.cancer.gov/projects/TCGABRCA ) Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines Article Snippet: Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Microenvironment Can Predict Chemotherapy Response of Patients with Triple-Negative Breast Cancer Receiving Neoadjuvant Chemotherapy. Article Snippet: TCGA RNA-sequencing and clinical data (n=1,097) were downloaded from the Broad Institute Genome Data Analysis Center Firehose database (https://gdac. broadinstitute.org/) and Genomic Data Commons (GDC) data portal (https://portal.gdc.cancer.gov/projects/TCGABRCA). Article Title: Identification of DDX60 as a Regulator of MHC-I Class Molecules in Colorectal Cancer. Article Snippet: The TCGA mRNA-sequencing data of CRC was obtained from the Broad Institute FireBrowse portal [36]. Article Title: UnitedMet harnesses RNA-metabolite covariation to impute metabolite levels in clinical samples. Article Snippet: We downloaded paired RNA-seq, WES and clinical data of 1,020 RCC tumor and adjacent normal samples in TCGA KIPAN from the Genome Data Analysis Center (GDAC) at Broad Institute. Article Title: Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR Article Snippet: We downloaded TCGA RNA-seq data (gene read counts) from the BROAD Institute TCGA GDAC at firebrowse.org (March 2019). Article Title: Mutant TP53 switches therapeutic vulnerability during gastric cancer progression within interleukin-6 family cytokines. Article Snippet: Signaling pathway activation analysis was adapted from Tan et al.6 Briefly, level 3 TCGA RNA-seq normalized data for 415 gastric cancer samples and 35 normal gastric samples, and their corresponding clinical information, were downloaded from the Broad Institute TCGA Genome Data Analysis Center Firehose. Article Title: Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer Article Snippet: The |
