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Isentio AS ripseq single interface
Ripseq Single Interface, supplied by Isentio AS, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ripseq+single/ripseq+software/pmc04042731-83-13-16
Average 90 stars, based on 1 article reviews
ripseq single interface - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Software:

Article Title: Analysis of Mixed Sequencing Chromatograms and Its Application in Direct 16S rRNA Gene Sequencing of Polymicrobial Samples
Article Snippet: The resulting mixed chromatograms were first displayed using the Chromas Pro software (Technolysium Ltd.) to define left and right trimming and signal cutoff values. .. Subsequently, they were read and matched against a reference database using the RipSeq software (iSentio) and the algorithm described above. ..

Article Title: Mycobacterium arupense , Mycobacterium heraklionense , and a Newly Proposed Species, “ Mycobacterium virginiense ” sp. nov., but Not Mycobacterium nonchromogenicum , as Species of the Mycobacterium terrae Complex Causing Tenosynovitis and Osteomyelitis
Article Snippet: After purifying the amplicon using USB ExoSap-IT reagent (Affymetrix, Santa Clara, CA), sequencing was performed using primers pC, pD, and pE ( 45 ) and a BigDye Terminator v3.1 cycle sequencing kit on an ABI 3500 genetic analyzer according to the manufacturer's instructions (Life Technologies, Carlsbad, CA). .. Gene sequence analysis was performed using RipSeq software (Isentio AS, Bergen, Norway). ..

Article Title: Nocardia thailandica Pulmonary Nocardiosis in a Post-Solid Organ Transplant Patient
Article Snippet: .. Analysis of the full 16S rRNA gene using Ripseq software (Isentio A.S, Bergen, Norway) gave a 100% match (1422/1422 bp) to the 16S rRNA gene of N. thailandica type strain IFM 10145 (GenBank accession number {"type":"entrez-nucleotide","attrs":{"text":"AB126874","term_id":"51315279","term_text":"AB126874"}} AB126874 ). ..

Article Title: Poster Abstracts
Article Snippet: .. Isentio ripseq software was used to analyse mixed chromatograms. ..

Article Title: Genetic Diversity of Circulating Rotavirus Strains in Tanzania Prior to the Introduction of Vaccination
Article Snippet: .. Nucleotide sequences were analyzed using the RipSeq interpretation software (iSentio Ltd., Bergen, Norway) and by the nucleotide BLAST service (NCBI). .. The evolutionary distances between Tanzanian strains, vaccine strains and the reference strains from GenBank were investigated using pairwise comparison from multiple sequence alignments using the Genius software package (Biomatters) and the phylogenetic tree was constructed using the UPGMA and Kimura two-parameter methods .

Article Title: Identification of Anaerobic Bacteria by Bruker Biotyper Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry with On-Plate Formic Acid Preparation
Article Snippet: Propionibacterium acnes was identified using catalase and quick indole testing, with all other identification performed by sequencing of the first 500 bases of the 16S rRNA gene as described previously ( 17 ), followed by sequence analysis using MicroSeq (MicroSeq ID, version 2.0, AB_bacterial500LIB_2.2; Applied Biosystems, Carlsbad, CA) and the Mayo Clinic custom anaerobe library (J. E. Rosenblatt, presented at Anaerobe 2004, the 7th Biennial Congress of the Anaerobe Society of the Americas, Annapolis, MD, 19 to 21 July 2004). .. RipSeq Mixed software (Isentio, Sunnyvale, CA) was used if an acceptable match (>99.0%) was not identified or if the consensus sequence had fewer than 420 bases. .. To reduce user variance, MALDI-TOF MS was performed by a single individual on isolates subcultured to CDC anaerobic blood agar plates following routine identification and grown for 48 to 72 h in anaerobic jars containing an anaerobic atmosphere generator pack (AnaeroPack; Remel, Lenexa, KS) at 35°C.

Article Title: Emergence of Unusual G6P[6] Rotaviruses in Children, Burkina Faso, 2009–2010
Article Snippet: .. Those containing multiple ambiguous base positions were considered to potentially represent multiple ROTAV strains and were analyzed by using the RipSeq mixed DNA interpretation software (iSentio Ltd., Bergen, Norway) ( ). ..

Sequencing:

Article Title: Mycobacterium arupense , Mycobacterium heraklionense , and a Newly Proposed Species, “ Mycobacterium virginiense ” sp. nov., but Not Mycobacterium nonchromogenicum , as Species of the Mycobacterium terrae Complex Causing Tenosynovitis and Osteomyelitis
Article Snippet: After purifying the amplicon using USB ExoSap-IT reagent (Affymetrix, Santa Clara, CA), sequencing was performed using primers pC, pD, and pE ( 45 ) and a BigDye Terminator v3.1 cycle sequencing kit on an ABI 3500 genetic analyzer according to the manufacturer's instructions (Life Technologies, Carlsbad, CA). .. Gene sequence analysis was performed using RipSeq software (Isentio AS, Bergen, Norway). ..

Article Title: Identification of Anaerobic Bacteria by Bruker Biotyper Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry with On-Plate Formic Acid Preparation
Article Snippet: Propionibacterium acnes was identified using catalase and quick indole testing, with all other identification performed by sequencing of the first 500 bases of the 16S rRNA gene as described previously ( 17 ), followed by sequence analysis using MicroSeq (MicroSeq ID, version 2.0, AB_bacterial500LIB_2.2; Applied Biosystems, Carlsbad, CA) and the Mayo Clinic custom anaerobe library (J. E. Rosenblatt, presented at Anaerobe 2004, the 7th Biennial Congress of the Anaerobe Society of the Americas, Annapolis, MD, 19 to 21 July 2004). .. RipSeq Mixed software (Isentio, Sunnyvale, CA) was used if an acceptable match (>99.0%) was not identified or if the consensus sequence had fewer than 420 bases. .. To reduce user variance, MALDI-TOF MS was performed by a single individual on isolates subcultured to CDC anaerobic blood agar plates following routine identification and grown for 48 to 72 h in anaerobic jars containing an anaerobic atmosphere generator pack (AnaeroPack; Remel, Lenexa, KS) at 35°C.



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