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ripseq web application  (Pathogenomix Inc)

 
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    Pathogenomix Inc ripseq web application
    Ripseq Web Application, supplied by Pathogenomix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ripseq+mixed+web+application/ripseq+mixed+web+application/pm30545581-129-5-8
    Average 90 stars, based on 1 article reviews
    ripseq web application - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Infection:

    Article Title: Investigation of erythema migrans patients identifies Borrelia species and Neoehrlichia mikurensis with implications for clinical assessment.
    Article Snippet: .. Mixed electropherogram with suspected co-infection infection were analyzed using RipSeq Mixed web application (http://www.ripseq.com/) (Pathogenomix, Santa Cruz, California, USA). .. Probe-based assays utilized Maxima Probe qPCR Master Mix (Thermo-Fisher Scientific), and SYBR Green assays utilized Maxima SYBR Green Master Mix (Thermo-Fisher Scientific).

    Article Title: Investigation of erythema migrans patients identifies Borrelia species and Neoehrlichia mikurensis with implications for clinical assessment
    Article Snippet: .. Mixed electropherogram with suspected co-infection infection were analyzed using RipSeq Mixed web application ( http://www.ripseq.com/ ) (Pathogenomix, Santa Cruz, California, USA). .. Probe-based assays utilized Maxima Probe qPCR Master Mix (Thermo-Fisher Scientific), and SYBR Green assays utilized Maxima SYBR Green Master Mix (Thermo-Fisher Scientific).

    other:

    Article Title: The use of broad-range bacterial PCR in the diagnosis of infectious diseases: a prospective cohort study.
    Article Snippet: In cases with polymicrobial infections, identification of the individual pathogens was performed by the RipSeq Mixed web-based application (Pathogenomix, USA) [21].

    Article Title: High-throughput screening of bacterial pathogens in clinical specimens using 16S rDNA qPCR and fragment analysis.
    Article Snippet: Newer bioinformatic tools like the RipSeq web application (Pathogenomix, Santa Cruz, CA, USA) can be used to analyze overlaying DNA chromatograms but in our experience only delivered bacterial species identification with a sufficient degree of certainty if mixed samples did not contain more than two different species.

    Article Title: Contribution of PCR Denaturing Gradient Gel Electrophoresis Combined with Mixed Chromatogram Software Separation for Complex Urinary Sample Analysis.
    Article Snippet: Complex samples are a challenge for sequencing-based broad-range diagnostics.. We analysed 19 urinary catheter, ureteral Double-J catheter, and urine samples using 3 metho dological approaches.. Out of the total 84 operational taxonomic units, 37, 61, and 88% were identified by culture, PCR-DGGE-SS (PCR denaturing gradient gel electrophoresis followed by Sanger sequencing), and PCR-DGGE-RM (PCRDGGE combined with software chromatogram separation by RipSeq Mixed tool), respectively.



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