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Johns Hopkins HealthCare hprd (human protein reference database)
Common druggable targets/protein databases overview
Hprd (Human Protein Reference Database), supplied by Johns Hopkins HealthCare, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/reference+protein+sequences+database/human+protein+reference+database/pmc06006786-47-0-6
Average 90 stars, based on 1 article reviews
hprd (human protein reference database) - by Bioz Stars, 2026-09
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Article Title: In silico approach in reveal traditional medicine plants pharmacological material basis

Journal: Chinese Medicine

doi: 10.1186/s13020-018-0190-0

Common druggable targets/protein databases overview
Figure Legend Snippet: Common druggable targets/protein databases overview

Techniques Used: Binding Assay, Functional Assay, Generated, Sequencing, Gene Expression, Protein-Protein interactions, High Throughput Screening Assay, Transduction, Ligand Binding Assay

Related Articles

Binding Assay:

Article Title: In silico approach in reveal traditional medicine plants pharmacological material basis
Article Snippet: HPRD (Human Protein Reference Database) , Johns Hopkins University and the Institute of Bioinformatics, USA , http://www.hprd.org , HPRD is a database of curated proteomic information pertaining to human proteins. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data , [ ] .

Article Title: Ref-1/APE1 as a Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: The Ref-1 interactome was defined based on the Human Protein Reference Database (HPRD, release 9; Institute of Bioinformatics, Johns Hopkins University) (31).

Article Title: STING nuclear partners contribute to innate immune signaling responses
Article Snippet: To map further interactions of proteins co-immunoprecipitated with STING, the proteins were searched against the human protein reference database (HPRD, Johns Hopkins University) to identify primary and secondary interactors, using Cytoscape ( ) for visualization.

Article Title: Nuclear envelope and genome interactions in cell fate
Article Snippet: Additionally, results of these proteomic analyses correlate with previously annotated protein complexes, reported in the interaction networks by the Johns Hopkins Human Protein Reference Data (HPRD) database.

Article Title: Proteomics research in India: an update.
Article Snippet: An Update on Proteomic Research in India Panga Jaipal Reddy, Apurva Atak, Saicharan Ghantasala, Saurabh Kumar, Shabarni Gupta, T.S.. Keshava Prasad, Surekha M. Zingde, Sanjeeva Srivastava PII: S1874-3919(15)00163-3 DOI: doi: 10.1016/j.jprot.2015.04.002 Reference: JPROT 2112 To appear in: Journal of Proteomics Received date: 28 March 2015 Accepted date: 6 April 2015 Please cite this article as: Reddy Panga Jaipal, Atak Apurva, Ghantasala Saicharan, Kumar Saurabh, Gupta Shabarni, Keshava Prasad TS, Zingde Surekha M., Srivastava Sanjeeva, An Update on Proteomic Research in India, Journal of Proteomics (2015), doi: 10.1016/j.jprot.2015.04.002 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.

Article Title: Ref-1/APE1 as Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: Immunoblotting Cell lysates were prepared in RIPA lysis buffer system (Santa Cruz Biotechnology, Dallas, TX), as described ( 21 , 22 ).

Functional Assay:

Article Title: In silico approach in reveal traditional medicine plants pharmacological material basis
Article Snippet: HPRD (Human Protein Reference Database) , Johns Hopkins University and the Institute of Bioinformatics, USA , http://www.hprd.org , HPRD is a database of curated proteomic information pertaining to human proteins. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data , [ ] .

Article Title: Ref-1/APE1 as a Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: The Ref-1 interactome was defined based on the Human Protein Reference Database (HPRD, release 9; Institute of Bioinformatics, Johns Hopkins University) (31).

Article Title: STING nuclear partners contribute to innate immune signaling responses
Article Snippet: To map further interactions of proteins co-immunoprecipitated with STING, the proteins were searched against the human protein reference database (HPRD, Johns Hopkins University) to identify primary and secondary interactors, using Cytoscape ( ) for visualization.

Article Title: Nuclear envelope and genome interactions in cell fate
Article Snippet: Additionally, results of these proteomic analyses correlate with previously annotated protein complexes, reported in the interaction networks by the Johns Hopkins Human Protein Reference Data (HPRD) database.

Article Title: Proteomics research in India: an update.
Article Snippet: An Update on Proteomic Research in India Panga Jaipal Reddy, Apurva Atak, Saicharan Ghantasala, Saurabh Kumar, Shabarni Gupta, T.S.. Keshava Prasad, Surekha M. Zingde, Sanjeeva Srivastava PII: S1874-3919(15)00163-3 DOI: doi: 10.1016/j.jprot.2015.04.002 Reference: JPROT 2112 To appear in: Journal of Proteomics Received date: 28 March 2015 Accepted date: 6 April 2015 Please cite this article as: Reddy Panga Jaipal, Atak Apurva, Ghantasala Saicharan, Kumar Saurabh, Gupta Shabarni, Keshava Prasad TS, Zingde Surekha M., Srivastava Sanjeeva, An Update on Proteomic Research in India, Journal of Proteomics (2015), doi: 10.1016/j.jprot.2015.04.002 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.

Article Title: Ref-1/APE1 as Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: Immunoblotting Cell lysates were prepared in RIPA lysis buffer system (Santa Cruz Biotechnology, Dallas, TX), as described ( 21 , 22 ).

Generated:

Article Title: In silico approach in reveal traditional medicine plants pharmacological material basis
Article Snippet: HPRD (Human Protein Reference Database) , Johns Hopkins University and the Institute of Bioinformatics, USA , http://www.hprd.org , HPRD is a database of curated proteomic information pertaining to human proteins. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data , [ ] .

Article Title: Ref-1/APE1 as a Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: The Ref-1 interactome was defined based on the Human Protein Reference Database (HPRD, release 9; Institute of Bioinformatics, Johns Hopkins University) (31).

Article Title: STING nuclear partners contribute to innate immune signaling responses
Article Snippet: To map further interactions of proteins co-immunoprecipitated with STING, the proteins were searched against the human protein reference database (HPRD, Johns Hopkins University) to identify primary and secondary interactors, using Cytoscape ( ) for visualization.

Article Title: Nuclear envelope and genome interactions in cell fate
Article Snippet: Additionally, results of these proteomic analyses correlate with previously annotated protein complexes, reported in the interaction networks by the Johns Hopkins Human Protein Reference Data (HPRD) database.

Article Title: Proteomics research in India: an update.
Article Snippet: An Update on Proteomic Research in India Panga Jaipal Reddy, Apurva Atak, Saicharan Ghantasala, Saurabh Kumar, Shabarni Gupta, T.S.. Keshava Prasad, Surekha M. Zingde, Sanjeeva Srivastava PII: S1874-3919(15)00163-3 DOI: doi: 10.1016/j.jprot.2015.04.002 Reference: JPROT 2112 To appear in: Journal of Proteomics Received date: 28 March 2015 Accepted date: 6 April 2015 Please cite this article as: Reddy Panga Jaipal, Atak Apurva, Ghantasala Saicharan, Kumar Saurabh, Gupta Shabarni, Keshava Prasad TS, Zingde Surekha M., Srivastava Sanjeeva, An Update on Proteomic Research in India, Journal of Proteomics (2015), doi: 10.1016/j.jprot.2015.04.002 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.

Article Title: Ref-1/APE1 as Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: Immunoblotting Cell lysates were prepared in RIPA lysis buffer system (Santa Cruz Biotechnology, Dallas, TX), as described ( 21 , 22 ).

Sequencing:

Article Title: In silico approach in reveal traditional medicine plants pharmacological material basis
Article Snippet: HPRD (Human Protein Reference Database) , Johns Hopkins University and the Institute of Bioinformatics, USA , http://www.hprd.org , HPRD is a database of curated proteomic information pertaining to human proteins. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data , [ ] .

Article Title: Ref-1/APE1 as a Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: The Ref-1 interactome was defined based on the Human Protein Reference Database (HPRD, release 9; Institute of Bioinformatics, Johns Hopkins University) (31).

Article Title: STING nuclear partners contribute to innate immune signaling responses
Article Snippet: To map further interactions of proteins co-immunoprecipitated with STING, the proteins were searched against the human protein reference database (HPRD, Johns Hopkins University) to identify primary and secondary interactors, using Cytoscape ( ) for visualization.

Article Title: Nuclear envelope and genome interactions in cell fate
Article Snippet: Additionally, results of these proteomic analyses correlate with previously annotated protein complexes, reported in the interaction networks by the Johns Hopkins Human Protein Reference Data (HPRD) database.

Article Title: Proteomics research in India: an update.
Article Snippet: An Update on Proteomic Research in India Panga Jaipal Reddy, Apurva Atak, Saicharan Ghantasala, Saurabh Kumar, Shabarni Gupta, T.S.. Keshava Prasad, Surekha M. Zingde, Sanjeeva Srivastava PII: S1874-3919(15)00163-3 DOI: doi: 10.1016/j.jprot.2015.04.002 Reference: JPROT 2112 To appear in: Journal of Proteomics Received date: 28 March 2015 Accepted date: 6 April 2015 Please cite this article as: Reddy Panga Jaipal, Atak Apurva, Ghantasala Saicharan, Kumar Saurabh, Gupta Shabarni, Keshava Prasad TS, Zingde Surekha M., Srivastava Sanjeeva, An Update on Proteomic Research in India, Journal of Proteomics (2015), doi: 10.1016/j.jprot.2015.04.002 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.

Article Title: Ref-1/APE1 as Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: Immunoblotting Cell lysates were prepared in RIPA lysis buffer system (Santa Cruz Biotechnology, Dallas, TX), as described ( 21 , 22 ).

Gene Expression:

Article Title: In silico approach in reveal traditional medicine plants pharmacological material basis
Article Snippet: HPRD (Human Protein Reference Database) , Johns Hopkins University and the Institute of Bioinformatics, USA , http://www.hprd.org , HPRD is a database of curated proteomic information pertaining to human proteins. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data , [ ] .

Article Title: Ref-1/APE1 as a Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: The Ref-1 interactome was defined based on the Human Protein Reference Database (HPRD, release 9; Institute of Bioinformatics, Johns Hopkins University) (31).

Article Title: STING nuclear partners contribute to innate immune signaling responses
Article Snippet: To map further interactions of proteins co-immunoprecipitated with STING, the proteins were searched against the human protein reference database (HPRD, Johns Hopkins University) to identify primary and secondary interactors, using Cytoscape ( ) for visualization.

Article Title: Nuclear envelope and genome interactions in cell fate
Article Snippet: Additionally, results of these proteomic analyses correlate with previously annotated protein complexes, reported in the interaction networks by the Johns Hopkins Human Protein Reference Data (HPRD) database.

Article Title: Proteomics research in India: an update.
Article Snippet: An Update on Proteomic Research in India Panga Jaipal Reddy, Apurva Atak, Saicharan Ghantasala, Saurabh Kumar, Shabarni Gupta, T.S.. Keshava Prasad, Surekha M. Zingde, Sanjeeva Srivastava PII: S1874-3919(15)00163-3 DOI: doi: 10.1016/j.jprot.2015.04.002 Reference: JPROT 2112 To appear in: Journal of Proteomics Received date: 28 March 2015 Accepted date: 6 April 2015 Please cite this article as: Reddy Panga Jaipal, Atak Apurva, Ghantasala Saicharan, Kumar Saurabh, Gupta Shabarni, Keshava Prasad TS, Zingde Surekha M., Srivastava Sanjeeva, An Update on Proteomic Research in India, Journal of Proteomics (2015), doi: 10.1016/j.jprot.2015.04.002 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.

Article Title: Ref-1/APE1 as Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: Immunoblotting Cell lysates were prepared in RIPA lysis buffer system (Santa Cruz Biotechnology, Dallas, TX), as described ( 21 , 22 ).

Protein-Protein interactions:

Article Title: In silico approach in reveal traditional medicine plants pharmacological material basis
Article Snippet: HPRD (Human Protein Reference Database) , Johns Hopkins University and the Institute of Bioinformatics, USA , http://www.hprd.org , HPRD is a database of curated proteomic information pertaining to human proteins. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data , [ ] .

Article Title: Ref-1/APE1 as a Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: The Ref-1 interactome was defined based on the Human Protein Reference Database (HPRD, release 9; Institute of Bioinformatics, Johns Hopkins University) (31).

Article Title: STING nuclear partners contribute to innate immune signaling responses
Article Snippet: To map further interactions of proteins co-immunoprecipitated with STING, the proteins were searched against the human protein reference database (HPRD, Johns Hopkins University) to identify primary and secondary interactors, using Cytoscape ( ) for visualization.

Article Title: Nuclear envelope and genome interactions in cell fate
Article Snippet: Additionally, results of these proteomic analyses correlate with previously annotated protein complexes, reported in the interaction networks by the Johns Hopkins Human Protein Reference Data (HPRD) database.

Article Title: Proteomics research in India: an update.
Article Snippet: An Update on Proteomic Research in India Panga Jaipal Reddy, Apurva Atak, Saicharan Ghantasala, Saurabh Kumar, Shabarni Gupta, T.S.. Keshava Prasad, Surekha M. Zingde, Sanjeeva Srivastava PII: S1874-3919(15)00163-3 DOI: doi: 10.1016/j.jprot.2015.04.002 Reference: JPROT 2112 To appear in: Journal of Proteomics Received date: 28 March 2015 Accepted date: 6 April 2015 Please cite this article as: Reddy Panga Jaipal, Atak Apurva, Ghantasala Saicharan, Kumar Saurabh, Gupta Shabarni, Keshava Prasad TS, Zingde Surekha M., Srivastava Sanjeeva, An Update on Proteomic Research in India, Journal of Proteomics (2015), doi: 10.1016/j.jprot.2015.04.002 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.

Article Title: Ref-1/APE1 as Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: Immunoblotting Cell lysates were prepared in RIPA lysis buffer system (Santa Cruz Biotechnology, Dallas, TX), as described ( 21 , 22 ).

High Throughput Screening Assay:

Article Title: In silico approach in reveal traditional medicine plants pharmacological material basis
Article Snippet: HPRD (Human Protein Reference Database) , Johns Hopkins University and the Institute of Bioinformatics, USA , http://www.hprd.org , HPRD is a database of curated proteomic information pertaining to human proteins. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data , [ ] .

Article Title: Ref-1/APE1 as a Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: The Ref-1 interactome was defined based on the Human Protein Reference Database (HPRD, release 9; Institute of Bioinformatics, Johns Hopkins University) (31).

Article Title: STING nuclear partners contribute to innate immune signaling responses
Article Snippet: To map further interactions of proteins co-immunoprecipitated with STING, the proteins were searched against the human protein reference database (HPRD, Johns Hopkins University) to identify primary and secondary interactors, using Cytoscape ( ) for visualization.

Article Title: Nuclear envelope and genome interactions in cell fate
Article Snippet: Additionally, results of these proteomic analyses correlate with previously annotated protein complexes, reported in the interaction networks by the Johns Hopkins Human Protein Reference Data (HPRD) database.

Article Title: Proteomics research in India: an update.
Article Snippet: An Update on Proteomic Research in India Panga Jaipal Reddy, Apurva Atak, Saicharan Ghantasala, Saurabh Kumar, Shabarni Gupta, T.S.. Keshava Prasad, Surekha M. Zingde, Sanjeeva Srivastava PII: S1874-3919(15)00163-3 DOI: doi: 10.1016/j.jprot.2015.04.002 Reference: JPROT 2112 To appear in: Journal of Proteomics Received date: 28 March 2015 Accepted date: 6 April 2015 Please cite this article as: Reddy Panga Jaipal, Atak Apurva, Ghantasala Saicharan, Kumar Saurabh, Gupta Shabarni, Keshava Prasad TS, Zingde Surekha M., Srivastava Sanjeeva, An Update on Proteomic Research in India, Journal of Proteomics (2015), doi: 10.1016/j.jprot.2015.04.002 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.

Article Title: Ref-1/APE1 as Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: Immunoblotting Cell lysates were prepared in RIPA lysis buffer system (Santa Cruz Biotechnology, Dallas, TX), as described ( 21 , 22 ).

Transduction:

Article Title: In silico approach in reveal traditional medicine plants pharmacological material basis
Article Snippet: HPRD (Human Protein Reference Database) , Johns Hopkins University and the Institute of Bioinformatics, USA , http://www.hprd.org , HPRD is a database of curated proteomic information pertaining to human proteins. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data , [ ] .

Article Title: Ref-1/APE1 as a Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: The Ref-1 interactome was defined based on the Human Protein Reference Database (HPRD, release 9; Institute of Bioinformatics, Johns Hopkins University) (31).

Article Title: STING nuclear partners contribute to innate immune signaling responses
Article Snippet: To map further interactions of proteins co-immunoprecipitated with STING, the proteins were searched against the human protein reference database (HPRD, Johns Hopkins University) to identify primary and secondary interactors, using Cytoscape ( ) for visualization.

Article Title: Nuclear envelope and genome interactions in cell fate
Article Snippet: Additionally, results of these proteomic analyses correlate with previously annotated protein complexes, reported in the interaction networks by the Johns Hopkins Human Protein Reference Data (HPRD) database.

Article Title: Proteomics research in India: an update.
Article Snippet: An Update on Proteomic Research in India Panga Jaipal Reddy, Apurva Atak, Saicharan Ghantasala, Saurabh Kumar, Shabarni Gupta, T.S.. Keshava Prasad, Surekha M. Zingde, Sanjeeva Srivastava PII: S1874-3919(15)00163-3 DOI: doi: 10.1016/j.jprot.2015.04.002 Reference: JPROT 2112 To appear in: Journal of Proteomics Received date: 28 March 2015 Accepted date: 6 April 2015 Please cite this article as: Reddy Panga Jaipal, Atak Apurva, Ghantasala Saicharan, Kumar Saurabh, Gupta Shabarni, Keshava Prasad TS, Zingde Surekha M., Srivastava Sanjeeva, An Update on Proteomic Research in India, Journal of Proteomics (2015), doi: 10.1016/j.jprot.2015.04.002 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.

Article Title: Ref-1/APE1 as Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: Immunoblotting Cell lysates were prepared in RIPA lysis buffer system (Santa Cruz Biotechnology, Dallas, TX), as described ( 21 , 22 ).

Ligand Binding Assay:

Article Title: In silico approach in reveal traditional medicine plants pharmacological material basis
Article Snippet: HPRD (Human Protein Reference Database) , Johns Hopkins University and the Institute of Bioinformatics, USA , http://www.hprd.org , HPRD is a database of curated proteomic information pertaining to human proteins. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data , [ ] .

Article Title: Ref-1/APE1 as a Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: The Ref-1 interactome was defined based on the Human Protein Reference Database (HPRD, release 9; Institute of Bioinformatics, Johns Hopkins University) (31).

Article Title: STING nuclear partners contribute to innate immune signaling responses
Article Snippet: To map further interactions of proteins co-immunoprecipitated with STING, the proteins were searched against the human protein reference database (HPRD, Johns Hopkins University) to identify primary and secondary interactors, using Cytoscape ( ) for visualization.

Article Title: Nuclear envelope and genome interactions in cell fate
Article Snippet: Additionally, results of these proteomic analyses correlate with previously annotated protein complexes, reported in the interaction networks by the Johns Hopkins Human Protein Reference Data (HPRD) database.

Article Title: Proteomics research in India: an update.
Article Snippet: An Update on Proteomic Research in India Panga Jaipal Reddy, Apurva Atak, Saicharan Ghantasala, Saurabh Kumar, Shabarni Gupta, T.S.. Keshava Prasad, Surekha M. Zingde, Sanjeeva Srivastava PII: S1874-3919(15)00163-3 DOI: doi: 10.1016/j.jprot.2015.04.002 Reference: JPROT 2112 To appear in: Journal of Proteomics Received date: 28 March 2015 Accepted date: 6 April 2015 Please cite this article as: Reddy Panga Jaipal, Atak Apurva, Ghantasala Saicharan, Kumar Saurabh, Gupta Shabarni, Keshava Prasad TS, Zingde Surekha M., Srivastava Sanjeeva, An Update on Proteomic Research in India, Journal of Proteomics (2015), doi: 10.1016/j.jprot.2015.04.002 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.

Article Title: Ref-1/APE1 as Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: Immunoblotting Cell lysates were prepared in RIPA lysis buffer system (Santa Cruz Biotechnology, Dallas, TX), as described ( 21 , 22 ).

Biomarker Discovery:

Article Title: In silico approach in reveal traditional medicine plants pharmacological material basis
Article Snippet: HPRD (Human Protein Reference Database) , Johns Hopkins University and the Institute of Bioinformatics, USA , http://www.hprd.org , HPRD is a database of curated proteomic information pertaining to human proteins. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data , [ ] .

Article Title: Ref-1/APE1 as a Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: The Ref-1 interactome was defined based on the Human Protein Reference Database (HPRD, release 9; Institute of Bioinformatics, Johns Hopkins University) (31).

Article Title: STING nuclear partners contribute to innate immune signaling responses
Article Snippet: To map further interactions of proteins co-immunoprecipitated with STING, the proteins were searched against the human protein reference database (HPRD, Johns Hopkins University) to identify primary and secondary interactors, using Cytoscape ( ) for visualization.

Article Title: Nuclear envelope and genome interactions in cell fate
Article Snippet: Additionally, results of these proteomic analyses correlate with previously annotated protein complexes, reported in the interaction networks by the Johns Hopkins Human Protein Reference Data (HPRD) database.

Article Title: Proteomics research in India: an update.
Article Snippet: An Update on Proteomic Research in India Panga Jaipal Reddy, Apurva Atak, Saicharan Ghantasala, Saurabh Kumar, Shabarni Gupta, T.S.. Keshava Prasad, Surekha M. Zingde, Sanjeeva Srivastava PII: S1874-3919(15)00163-3 DOI: doi: 10.1016/j.jprot.2015.04.002 Reference: JPROT 2112 To appear in: Journal of Proteomics Received date: 28 March 2015 Accepted date: 6 April 2015 Please cite this article as: Reddy Panga Jaipal, Atak Apurva, Ghantasala Saicharan, Kumar Saurabh, Gupta Shabarni, Keshava Prasad TS, Zingde Surekha M., Srivastava Sanjeeva, An Update on Proteomic Research in India, Journal of Proteomics (2015), doi: 10.1016/j.jprot.2015.04.002 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.

Article Title: Ref-1/APE1 as Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: Immunoblotting Cell lysates were prepared in RIPA lysis buffer system (Santa Cruz Biotechnology, Dallas, TX), as described ( 21 , 22 ).

Software:

Article Title: In silico approach in reveal traditional medicine plants pharmacological material basis
Article Snippet: HPRD (Human Protein Reference Database) , Johns Hopkins University and the Institute of Bioinformatics, USA , http://www.hprd.org , HPRD is a database of curated proteomic information pertaining to human proteins. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data , [ ] .

Article Title: Ref-1/APE1 as a Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: The Ref-1 interactome was defined based on the Human Protein Reference Database (HPRD, release 9; Institute of Bioinformatics, Johns Hopkins University) (31).

Article Title: STING nuclear partners contribute to innate immune signaling responses
Article Snippet: To map further interactions of proteins co-immunoprecipitated with STING, the proteins were searched against the human protein reference database (HPRD, Johns Hopkins University) to identify primary and secondary interactors, using Cytoscape ( ) for visualization.

Article Title: Nuclear envelope and genome interactions in cell fate
Article Snippet: Additionally, results of these proteomic analyses correlate with previously annotated protein complexes, reported in the interaction networks by the Johns Hopkins Human Protein Reference Data (HPRD) database.

Article Title: Proteomics research in India: an update.
Article Snippet: An Update on Proteomic Research in India Panga Jaipal Reddy, Apurva Atak, Saicharan Ghantasala, Saurabh Kumar, Shabarni Gupta, T.S.. Keshava Prasad, Surekha M. Zingde, Sanjeeva Srivastava PII: S1874-3919(15)00163-3 DOI: doi: 10.1016/j.jprot.2015.04.002 Reference: JPROT 2112 To appear in: Journal of Proteomics Received date: 28 March 2015 Accepted date: 6 April 2015 Please cite this article as: Reddy Panga Jaipal, Atak Apurva, Ghantasala Saicharan, Kumar Saurabh, Gupta Shabarni, Keshava Prasad TS, Zingde Surekha M., Srivastava Sanjeeva, An Update on Proteomic Research in India, Journal of Proteomics (2015), doi: 10.1016/j.jprot.2015.04.002 This is a PDF file of an unedited manuscript that has been accepted for publication.. As a service to our customers we are providing this early version of the manuscript.

Article Title: Ref-1/APE1 as Transcriptional Regulator and Novel Therapeutic Target in Pediatric T-cell Leukemia
Article Snippet: Immunoblotting Cell lysates were prepared in RIPA lysis buffer system (Santa Cruz Biotechnology, Dallas, TX), as described ( 21 , 22 ).



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