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recombination detection program v4.45  (Simplot Science)

 
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    Simplot Science recombination detection program v4.45
    Recombination Detection Program V4.45, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/recombination+detection+program/rdp4/pm39205241-62-1-8
    Average 90 stars, based on 1 article reviews
    recombination detection program v4.45 - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Software:

    Article Title: Pathogen identification and analysis of broiler bronchial obstruction syndrome using high-throughput sequencing technology.
    Article Snippet: .. Bootscan analysis performed using Simplot software (Fig. 8) further validated the recombination events identified by RDP4 software and no recombination events were found in the S gene. ..

    Article Title: Discovery of a novel genogroup feline calicivirus through molecular evolution in group-housed cats in China.
    Article Snippet: .. SimPlot and RDP4 software were used to identify possible recombinant events. ..

    Article Title: Emergence of a novel porcine reproductive and respiratory syndrome virus strain inducing biphasic temperature fluctuations in Tianjin, northern China.
    Article Snippet: Porcine reproductive and respiratory syndrome virus (PRRSV) has imposed significant economic burdens on the global swine industry.. The majority of PRRSV strains can induce high fever at various stages of pig development.. However, the PRRSV strain that triggers the biphasic temperature phenomenon remains relatively rare.

    Recombinant:

    Article Title: Discovery of a novel genogroup feline calicivirus through molecular evolution in group-housed cats in China.
    Article Snippet: .. SimPlot and RDP4 software were used to identify possible recombinant events. ..

    other:

    Article Title: Pathogen identification and analysis of broiler bronchial obstruction syndrome using high-throughput sequencing technology
    Article Snippet: Whole-genome recombination analysis using RDP4 and Simplot software identified novel recombinants in CK/CH/HBBD/BD6 and CK/CH/HBBD/BD32, supported by at least five analytical methods.

    Article Title: Genetic characterization of type 3 vaccine-derived poliovirus from a patient with hand, foot, and mouth disease in China.
    Article Snippet: SimPlot (version 3.5.1) was used for the preliminary detection of genome-wide recombination events in the whole genome, and RDP4 (version 4.101) software was used to analyze the recombinant strains.



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    recombination detection program v4.45  (Simplot Science)
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    Genetic <t> recombination </t> events of GNU-2353 and GNU-2377 detected by RDP4 software.
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    Image Search Results


    Recombination trend analysis of EV-G Epidemic Strains. Recombination events among the twenty-eight EV-G strains (see <xref ref-type=Figure 2 ) were analyzed using RDP software. Seventeen high-confidence events, consistently identified by all seven algorithms (RDP, GENECONV, BootScan, MaxChi, Chimaera, SiScan, and 3Seq), were selected for further characterization. Their recombination maps are displayed below, aligned with a reference EVG-SH-2024 ( PV984503 ) genome schematic for comparative analysis. " width="100%" height="100%">

    Journal: Frontiers in Cellular and Infection Microbiology

    Article Title: Isolation and characterization of an enterovirus G strain causing diarrhea and gut microbiota dysbiosis in piglets

    doi: 10.3389/fcimb.2025.1699507

    Figure Lengend Snippet: Recombination trend analysis of EV-G Epidemic Strains. Recombination events among the twenty-eight EV-G strains (see Figure 2 ) were analyzed using RDP software. Seventeen high-confidence events, consistently identified by all seven algorithms (RDP, GENECONV, BootScan, MaxChi, Chimaera, SiScan, and 3Seq), were selected for further characterization. Their recombination maps are displayed below, aligned with a reference EVG-SH-2024 ( PV984503 ) genome schematic for comparative analysis.

    Article Snippet: Recombination detection program (RDP) analysis of the full-length EVG-SH-2024 genome, together with other EV-G sequences, indicated close relatedness to strain 13-03212/United States/2014 ( KF985175 ) in the genomic region spanning nt 1, 318–3, 830, as determined by SimPlot/SIScan analysis (P ≤ 7.468 × 10 -30 ) ( ).

    Techniques: Software

    Genetic recombination events of GNU-2353 and GNU-2377 detected by RDP4 software.

    Journal: Transboundary and Emerging Diseases

    Article Title: Comparative Genomic and Biological Investigation of NADC30- and NADC34-Like PRRSV Strains Isolated in South Korea

    doi: 10.1155/tbed/9015349

    Figure Lengend Snippet: Genetic recombination events of GNU-2353 and GNU-2377 detected by RDP4 software.

    Article Snippet: Potential recombination events were analyzed using recombination detection program (RDP), SimPlot, and phylogeny, as described previously [ ].

    Techniques: Software