genome analyzer sequence data raw hisegtm sequence data  (Adaptive Biotechnologies Corp)

Journal: Journal of Arrhythmia

Article Title: General anesthesia enhances lesion quality and ablation efficiency of circumferential pulmonary vein isolation

doi: 10.1002/joa3.12960

Figure Lengend Snippet: General anesthesia improves PVI performance. The AIFV system will independently evaluate each ablation point in pulmonary vein (PV) circles, including inter‐lesion distance, percentage of lesions with effective force‐over‐time (FOT ratio), percentage of lesions with effective AI (AI ratio), radiofrequency time, etc., and finally present the results in the form of a hexagonal radar chart. Ablation of atrial fibrillation under general anesthesia can comprehensively improve various procedural parameters.

Article Snippet: An ablation–evaluation software named AIFV (using AI to analyze the raw data from CARTO3) system (Biosense Webster Inc. Irvine, CA) was used to describe the overall quality for the two pulmonary vein (PV) circles.

Techniques:

Journal: Cell reports

Article Title: Pancreatic islet protection at the expense of secretory function involves serine-linked mitochondrial one-carbon metabolism

doi: 10.1016/j.celrep.2023.112615

Figure Lengend Snippet:

Article Snippet: RNA-sequencing raw and analyzed data , This paper; Mendeley Data , DOI: 10.17632/4rwmrc9cpr.4 and DOI: 10.17632/g4bdvw6czr.2.

Techniques: Virus, Control, Plasmid Preparation, Recombinant, Reverse Transcription, Fractionation, Enzyme-linked Immunosorbent Assay, Software, Staining

Journal: Med (New York, N.y.)

Article Title: A randomized, double-blind, placebo-controlled trial of intravenous alpha-1 antitrypsin for ARDS secondary to COVID-19

doi: 10.1016/j.medj.2022.03.001

Figure Lengend Snippet:

Article Snippet: Deidentified raw and analyzed data file , This paper , Mendeley data: https://doi.org/10.17632/xrrkf8fr9y.1.

Techniques: Clinical Proteomics, Recombinant, Enzyme-linked Immunosorbent Assay, Software

Journal: Cell reports

Article Title: An mTORC1-dependent switch orchestrates the transition between mouse spermatogonial stem cells and clones of progenitor spermatogonia

doi: 10.1016/j.celrep.2021.108752

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: Raw and analyzed Adult Mouse spermatogenic cell 10x Genomics scRNA-seq data , , GEO: GSE109033.

Techniques: Control, Recombinant, Software, Cell Cycle Assay

Journal: Cell reports

Article Title: An mTORC1-dependent switch orchestrates the transition between mouse spermatogonial stem cells and clones of progenitor spermatogonia

doi: 10.1016/j.celrep.2021.108752

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: Raw and analyzed Adult Mouse spermatogonia 10x Genomics scRNA-seq data , , GEO: GSE107256.

Techniques: Control, Recombinant, Software, Cell Cycle Assay

Journal: Cell Reports

Article Title: K13-Mediated Reduced Susceptibility to Artemisinin in Plasmodium falciparum Is Overlaid on a Trait of Enhanced DNA Damage Repair

doi: 10.1016/j.celrep.2020.107996

Figure Lengend Snippet: Optimization of CometChip (A and B) Representative pictures of “comet” of ring and schizont-stage P. falciparum 3D7 after on-chip hydrogen peroxide (H 2 O 2 ) treatment. Each green dot indicates a microwell in the CometChip. Each macrowell of the 96-well plate contains around ~300 of such microwells. The magnified view of the boxed area below shows the differentiation of head (between the green line and red line) and tail (between the red line and blue line) of an individual comet. This process would be automatically done by the algorithm as shown in the . Scale bars, 50 nm. (C) Quantification of “comet” after treatment. The y axis represents the percentage of DNA at the “comet” tail (%Tail DNA). On average, ~306 comets were analyzed per macrowell. Each experiment was done in technical triplicates, and data here were collected and are shown in biological triplicates. ∗ p < 0.05; ∗∗ p < 0.01, one-way analysis of variance (ANOVA). Dunnett’s multiple comparison tests were performed between vehicle control (0 μM) and respective concentrations. All data are indicated as means ± SEM.

Article Snippet: CometChip raw data and analyzed results, Part five , This paper; Mendeley data , https://doi.org/10.17632/8gsnzy5ndj.1.

Techniques: Comparison, Control

Journal: Cell Reports

Article Title: K13-Mediated Reduced Susceptibility to Artemisinin in Plasmodium falciparum Is Overlaid on a Trait of Enhanced DNA Damage Repair

doi: 10.1016/j.celrep.2020.107996

Figure Lengend Snippet: Artesunate-Induced DNA Damage in P. falciparum Lab Strains (A) Schematic illustration of artesunate treatment based on Streptolysin O (SLO) enrichment (ring stage) or Percoll gradient centrifugation (schizont stage). (B) Artesunate-induced DNA damage in P. falciparum 3D7, Dd2, and Dd2 I543T . Ring-stage (upper panel) and schizont-stage (lower panel) P. falciparum parasites were treated with different concentrations of artesunate for 1 h and subjected to analysis on alkaline CometChip. On average, ~302 comets were analyzed per macrowell. Each experiment was done in technical triplicates, and data here were collected and are shown in biological triplicates or quadruplicates. ∗∗ p < 0.01; ∗∗∗ p < 0.001; ∗∗∗∗ p < 0.0001, one-way ANOVA. Dunnett’s multiple comparison tests were performed between vehicle control (0 μM) and respective concentrations. All data are indicated as means ± SEM.

Article Snippet: CometChip raw data and analyzed results, Part five , This paper; Mendeley data , https://doi.org/10.17632/8gsnzy5ndj.1.

Techniques: Gradient Centrifugation, Comparison, Control

Journal: Cell Reports

Article Title: K13-Mediated Reduced Susceptibility to Artemisinin in Plasmodium falciparum Is Overlaid on a Trait of Enhanced DNA Damage Repair

doi: 10.1016/j.celrep.2020.107996

Figure Lengend Snippet:

Article Snippet: CometChip raw data and analyzed results, Part five , This paper; Mendeley data , https://doi.org/10.17632/8gsnzy5ndj.1.

Techniques: Recombinant, Giemsa Stain, Saline, Purification, Plasmid Preparation, Software