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Mendeley Ltd snrna seq r script
Snrna Seq R Script, supplied by Mendeley Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/r-script/refinement+seq+snrna/pmc12590003-56-0-7
Average 86 stars, based on 1 article reviews
snrna seq r script - by Bioz Stars, 2026-10
86/100 stars

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Article Title: TAOK2 controls synaptic plasticity and anxiety via ERK and calcium signaling
Article Snippet: snRNA-seq R script , This paper , Mendeley Data: https://doi.org/10.17632/k2n7jwx9rn.1.

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Article Title: SenCat: Cataloging human cell senescence through multi-omic profiling of multiple senescent primary cell types.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins DMEM Gibco Cat# 11965092 FBS Gibco Cat# A5256801 Penicillin-Streptomycin Gibco Cat# 15140122 Nonessential Amino Acids (100X) Gibco Cat# 11140050 Antibiotic-antimycotic (100X) Gibco Cat# 15240062 Maxima Reverse Transcriptase Thermo Scientific Cat# EP0743 KAPA SYBR Fast ABI Master Mix (2X) Roche Cat# 07959435001 RiboLock RNase Inhibitor Invitrogen Cat# EO0381 Random Primers Invitrogen Cat# 48190011 dNTP Mix (10 mM each) Thermo Scientific Cat# R0192 Sodium pyruvate Gibco 11360070 RPMI 1640 Gibco 11875093 Ham’s F-10 medium Gibco 11550043 Doxorubicin Selleckchem S1208 Etoposide Selleckchem S1225 Triethylammonium bicarbonate Thermo Fisher Scientific Cat# 90114 Dithiothreitol Sigma-Aldrich Cat# D9779 Iodoacetamide Sigma-Aldrich Cat# I1149 Trypsin Promega Cat# V5113 Formic acid Sigma-Aldrich Cat# 27001 Nonidet P40 Substitute Sigma-Aldrich Cat# 74385 Critical commercial assays RLT Buffer QIAGEN 79216 RNeasy Plus Mini Kit QIAGEN 74136 TruSeq Stranded Total RNA Library Prep Kit Illumina Cat# 20020598 AMPure XP beads Beckman Coulter Cat# A63881 SPRIselect beads Beckman Coulter Cat# B23318 BrdU Cell Proliferation Assay Kit Cell Signaling Technology Cat# 6813 Senescence β-Galactosidase Staining Kit Cell Signaling Technology Cat# 9860 Pierce BCA Protein Assay Kit Thermo Fisher Scientific Cat# 23225 Oasis HLB Solid Phase Extraction Cartridges Waters Cat# 186000383 Minute Single Nucleus Isolation Kit for Tissues/Cells Invent Biotechnologies Cat# SN-047 Chromium GEM-X Single Cell 3’ Kit v4 10x Genomics PN-1000691 Chromium Single Cell 3’ Library Construction Kit C 10x Genomics PN-1000694 Deposited data Previously published and/or public datasets used GEO ProteomeXchange GSE247719; PXD058684 Bulk RNA-seq data generated in this study GEO GSE285826 snRNA-seq data from doxorubicintreated mice GEO GSE302792 (Continued on next page) ll OPEN ACCESSResource Molecular Cell 86, 1–12.e1–e8, July 2, 2026 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Bulk proteomic raw data MassIVE MSV000096215 Original microscopy images Mendeley Data DOI: 10.17632/5wt4tzhs7z.1 snRNA-seq refinement, senescence calling, and bulk proteomic analysis code Zenodo 10.5281/zenodo.19203645; 10.5281/ zenodo.19204600 ML analysis code Zenodo / GitHub DOI: 10.5281/zenodo.19333691; DOI: 10. .. 5281/zenodo.20008425; https://github. com/maragkakislab/wf-ml-markerssenescence Experimental models: Cell lines WI-38 human lung fibroblasts Coriell Institute for Medical Research AG06814-N BJ human skin fibroblasts ATCC CRL-2522 HSAEC human small airway epithelial cells ATCC PCS-301-010 HEKn human epidermal keratinocytes ATCC PCS-200-010 HCAEC human coronary artery endothelial cells LifeLine Cell Technology FC-0032 HUVEC human umbilical vein endothelial cells ATCC PCS-100-010 Human bone marrow mesenchymal stem cells ATCC PCS-500-012 Human vascular smooth muscle cells LifeLine Cell Technology FC-0031 Human skeletal myoblasts Gibco A12555 Human PBMCs ATCC PCS-800-011 Human subcutaneous preadipocytes ATCC PCS-210-010 Normal human osteoblasts Lonza CC-2538 Normal human astrocytes Lonza CC-2565 Human epidermal melanocytes, neonatal ATCC PCS-200-012 Experimental models: Organisms/strains C57BL/6JN mice NIA rodent colony Table S8 Oligonucleotides Oligonucleotides used in this study This paper Table S9 Software and algorithms bcl2fastq Illumina v2.20.0.422 FastQC Babraham Bioinformatics v0.11.9 BBTools / BBDuk Joint Genome Institute v38.76 STAR aligner Dobin et al.37 v2.7.0f_0328 Subread / featureCounts Liao et al.38 v2.10.5 DESeq2 Bioconductor v1.32.0 Enrichr Ma’ayan Lab Web platform Metascape Metascape Web platform Spectronaut Biognosys v18.1 R R Project v4.5.0 Seurat Satija Lab v5 Python Python Software Foundation v3.11.10 Cell Ranger 10x Genomics v9.0.0 Harmony Korsunsky et al.39 v1.2.4 Other Illumina NovaSeq 6000 Illumina Instrument Illumina NovaSeq X-Plus Illumina Instrument UltiMate 3000 nano-HPLC system Thermo Fisher Scientific Instrument (Continued on next page) ll OPEN ACCESS Resource e2 Molecular Cell 86, 1–12.e1–e8, July 2, 2026



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