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quickchange mutagenesis  (New England Biolabs)


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    Structured Review

    New England Biolabs quickchange mutagenesis
    Quickchange Mutagenesis, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 6159 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/quickchange/DpnI/pm41535472-537-3-19
    Average 99 stars, based on 6159 article reviews
    quickchange mutagenesis - by Bioz Stars, 2026-10
    99/100 stars

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    Related Articles

    Purification:

    Article Title: Display of Linoleic Acid Isomerase on Bacillus subtilis Spores for Bioconversion of Linoleic Acid to t10,c12-Conjugated Linoleic Acid
    Article Snippet: PCR fragments of the codon-optimized PAI gene and the p1CSV backbone were amplified using uracil-containing primers and Phusion U Hot Start DNA Polymerase (Thermo Fisher Scientific (Waltham, MA, USA)). .. Following DpnI digestion, purified PCR products were combined with USER enzyme mix (New England Biolabs (Ipswich, MA, USA)) and incubated sequentially at 37 ◦C and 25 ◦C to generate recombinant plasmids. ..

    Polymerase Chain Reaction:

    Article Title: Display of Linoleic Acid Isomerase on Bacillus subtilis Spores for Bioconversion of Linoleic Acid to t10,c12-Conjugated Linoleic Acid
    Article Snippet: PCR fragments of the codon-optimized PAI gene and the p1CSV backbone were amplified using uracil-containing primers and Phusion U Hot Start DNA Polymerase (Thermo Fisher Scientific (Waltham, MA, USA)). .. Following DpnI digestion, purified PCR products were combined with USER enzyme mix (New England Biolabs (Ipswich, MA, USA)) and incubated sequentially at 37 ◦C and 25 ◦C to generate recombinant plasmids. ..

    Article Title: SPE-55 and VHA-18 are essential for FB-MO complex assembly and transport during spermatogenesis in C. elegans.
    Article Snippet: Prior to inserting the target sequence into the pDD162 plasmid, the plasmid was PCR-amplified using Q5 high-fidelity DNA polymerase (New England Biolabs) with the primers listed in Supplementary Data 1. .. Subsequently, the PCR products were digested with DpnI (New England Biolabs) for 2 h at 37 °C and transformed into DH5α competent cells. ..

    Article Title: P450 cyptide synthase KwwB catalyzes non-native cross-link at Tyr-C3-Trp-N1 and tolerates leader peptide mutations.
    Article Snippet: .. These plasmids containing mutated residue were amplified with Phusion high-fidelity DNA polymerase (New England Biolabs) in PCR thermal cycler (Eppendorf), followed by digestion with enzyme DpnI (New England Biolabs), gel purification with DNA extraction kit (Bio Basic), DNA 5’ phosphorylation with T4 polynucleotide kinase (New England Biolabs), and DNA ligation with T4 DNA ligase (New England Biolabs). .. The cloned plasmids were transformed into E. coli DH5α, then harvested with Monarch plasmid miniprep kit (New England Biolabs), and sequence verified at Genewiz from Azenta Life Sciences.

    Article Title: Leveraging high-throughput proteomics and AI-based protein folding to accelerate VAV1 molecular glue discovery.
    Article Snippet: Wildtype human full-length VAV1 gene fused with N-terminal nLuc was synthesized and cloned into pRP[Exp]-Puro-CMVby VectorBuilder Inc. Wildtype human full-length LIMD1 cDNA was obtained from the Advanced Cell Engineering & 3D Models Core at Baylor College of Medicine and cloned into the same backbone by replacing VAV1. .. PCR amplicons were obtained using KOD One (Sigma, KMM-101NV) with specified mutagenesis PCR primer pairs (manufactured by Integrated DNA Technologies, Inc.) in the Table 1, followed by DpnI digestion (New England Biolabs, R0176S) and PCR product clean-up using FastPure gel extraction kit (Vazyme, DC301-01). .. Both site-directed mutagenesis and domain truncation were performed using ClonExpress Ultra One Step Cloning Kit V2 (Vazyme, C116-01) under 50 °C for 15min.

    Article Title: Geometry of braided DNA dictates supercoiling partitioning.
    Article Snippet: This intermediate plasmid had an unwanted Nt.BbvCI (NEB, R0632) recognition sequence on top of four that was included by design. .. This site was removed using site directed mutagenesis, first using PCR amplification from the intermediate plasmid with primers (KLD nickRemoval F, KLD nickRemoval R, Supplementary Table 4), followed by a KLD reaction on the PCR product with T4 PNK (NEB, M0201S), T4 ligase (NEB, M0202S), and DpnI (NEB, R0176S). ..

    Article Title: ATHENA: a dynamic metabolic hub balancing carbon economy and energy supply in microbial synthesis
    Article Snippet: .. Briefly, mutagenesis was generated by inverse PCR of the plasmid using the corresponding primers, and the PCR product digested by DpnI (New England Biolabs, USA) was transformed into E. coli DH5α. ..

    Incubation:

    Article Title: Display of Linoleic Acid Isomerase on Bacillus subtilis Spores for Bioconversion of Linoleic Acid to t10,c12-Conjugated Linoleic Acid
    Article Snippet: PCR fragments of the codon-optimized PAI gene and the p1CSV backbone were amplified using uracil-containing primers and Phusion U Hot Start DNA Polymerase (Thermo Fisher Scientific (Waltham, MA, USA)). .. Following DpnI digestion, purified PCR products were combined with USER enzyme mix (New England Biolabs (Ipswich, MA, USA)) and incubated sequentially at 37 ◦C and 25 ◦C to generate recombinant plasmids. ..

    Recombinant:

    Article Title: Display of Linoleic Acid Isomerase on Bacillus subtilis Spores for Bioconversion of Linoleic Acid to t10,c12-Conjugated Linoleic Acid
    Article Snippet: PCR fragments of the codon-optimized PAI gene and the p1CSV backbone were amplified using uracil-containing primers and Phusion U Hot Start DNA Polymerase (Thermo Fisher Scientific (Waltham, MA, USA)). .. Following DpnI digestion, purified PCR products were combined with USER enzyme mix (New England Biolabs (Ipswich, MA, USA)) and incubated sequentially at 37 ◦C and 25 ◦C to generate recombinant plasmids. ..

    Transformation Assay:

    Article Title: SPE-55 and VHA-18 are essential for FB-MO complex assembly and transport during spermatogenesis in C. elegans.
    Article Snippet: Prior to inserting the target sequence into the pDD162 plasmid, the plasmid was PCR-amplified using Q5 high-fidelity DNA polymerase (New England Biolabs) with the primers listed in Supplementary Data 1. .. Subsequently, the PCR products were digested with DpnI (New England Biolabs) for 2 h at 37 °C and transformed into DH5α competent cells. ..

    Article Title: ATHENA: a dynamic metabolic hub balancing carbon economy and energy supply in microbial synthesis
    Article Snippet: .. Briefly, mutagenesis was generated by inverse PCR of the plasmid using the corresponding primers, and the PCR product digested by DpnI (New England Biolabs, USA) was transformed into E. coli DH5α. ..

    Residue:

    Article Title: P450 cyptide synthase KwwB catalyzes non-native cross-link at Tyr-C3-Trp-N1 and tolerates leader peptide mutations.
    Article Snippet: .. These plasmids containing mutated residue were amplified with Phusion high-fidelity DNA polymerase (New England Biolabs) in PCR thermal cycler (Eppendorf), followed by digestion with enzyme DpnI (New England Biolabs), gel purification with DNA extraction kit (Bio Basic), DNA 5’ phosphorylation with T4 polynucleotide kinase (New England Biolabs), and DNA ligation with T4 DNA ligase (New England Biolabs). .. The cloned plasmids were transformed into E. coli DH5α, then harvested with Monarch plasmid miniprep kit (New England Biolabs), and sequence verified at Genewiz from Azenta Life Sciences.

    Amplification:

    Article Title: P450 cyptide synthase KwwB catalyzes non-native cross-link at Tyr-C3-Trp-N1 and tolerates leader peptide mutations.
    Article Snippet: .. These plasmids containing mutated residue were amplified with Phusion high-fidelity DNA polymerase (New England Biolabs) in PCR thermal cycler (Eppendorf), followed by digestion with enzyme DpnI (New England Biolabs), gel purification with DNA extraction kit (Bio Basic), DNA 5’ phosphorylation with T4 polynucleotide kinase (New England Biolabs), and DNA ligation with T4 DNA ligase (New England Biolabs). .. The cloned plasmids were transformed into E. coli DH5α, then harvested with Monarch plasmid miniprep kit (New England Biolabs), and sequence verified at Genewiz from Azenta Life Sciences.

    Article Title: Geometry of braided DNA dictates supercoiling partitioning.
    Article Snippet: This intermediate plasmid had an unwanted Nt.BbvCI (NEB, R0632) recognition sequence on top of four that was included by design. .. This site was removed using site directed mutagenesis, first using PCR amplification from the intermediate plasmid with primers (KLD nickRemoval F, KLD nickRemoval R, Supplementary Table 4), followed by a KLD reaction on the PCR product with T4 PNK (NEB, M0201S), T4 ligase (NEB, M0202S), and DpnI (NEB, R0176S). ..

    Gel Purification:

    Article Title: P450 cyptide synthase KwwB catalyzes non-native cross-link at Tyr-C3-Trp-N1 and tolerates leader peptide mutations.
    Article Snippet: .. These plasmids containing mutated residue were amplified with Phusion high-fidelity DNA polymerase (New England Biolabs) in PCR thermal cycler (Eppendorf), followed by digestion with enzyme DpnI (New England Biolabs), gel purification with DNA extraction kit (Bio Basic), DNA 5’ phosphorylation with T4 polynucleotide kinase (New England Biolabs), and DNA ligation with T4 DNA ligase (New England Biolabs). .. The cloned plasmids were transformed into E. coli DH5α, then harvested with Monarch plasmid miniprep kit (New England Biolabs), and sequence verified at Genewiz from Azenta Life Sciences.

    DNA Extraction:

    Article Title: P450 cyptide synthase KwwB catalyzes non-native cross-link at Tyr-C3-Trp-N1 and tolerates leader peptide mutations.
    Article Snippet: .. These plasmids containing mutated residue were amplified with Phusion high-fidelity DNA polymerase (New England Biolabs) in PCR thermal cycler (Eppendorf), followed by digestion with enzyme DpnI (New England Biolabs), gel purification with DNA extraction kit (Bio Basic), DNA 5’ phosphorylation with T4 polynucleotide kinase (New England Biolabs), and DNA ligation with T4 DNA ligase (New England Biolabs). .. The cloned plasmids were transformed into E. coli DH5α, then harvested with Monarch plasmid miniprep kit (New England Biolabs), and sequence verified at Genewiz from Azenta Life Sciences.

    Phospho-proteomics:

    Article Title: P450 cyptide synthase KwwB catalyzes non-native cross-link at Tyr-C3-Trp-N1 and tolerates leader peptide mutations.
    Article Snippet: .. These plasmids containing mutated residue were amplified with Phusion high-fidelity DNA polymerase (New England Biolabs) in PCR thermal cycler (Eppendorf), followed by digestion with enzyme DpnI (New England Biolabs), gel purification with DNA extraction kit (Bio Basic), DNA 5’ phosphorylation with T4 polynucleotide kinase (New England Biolabs), and DNA ligation with T4 DNA ligase (New England Biolabs). .. The cloned plasmids were transformed into E. coli DH5α, then harvested with Monarch plasmid miniprep kit (New England Biolabs), and sequence verified at Genewiz from Azenta Life Sciences.

    DNA Ligation:

    Article Title: P450 cyptide synthase KwwB catalyzes non-native cross-link at Tyr-C3-Trp-N1 and tolerates leader peptide mutations.
    Article Snippet: .. These plasmids containing mutated residue were amplified with Phusion high-fidelity DNA polymerase (New England Biolabs) in PCR thermal cycler (Eppendorf), followed by digestion with enzyme DpnI (New England Biolabs), gel purification with DNA extraction kit (Bio Basic), DNA 5’ phosphorylation with T4 polynucleotide kinase (New England Biolabs), and DNA ligation with T4 DNA ligase (New England Biolabs). .. The cloned plasmids were transformed into E. coli DH5α, then harvested with Monarch plasmid miniprep kit (New England Biolabs), and sequence verified at Genewiz from Azenta Life Sciences.

    Mutagenesis:

    Article Title: Leveraging high-throughput proteomics and AI-based protein folding to accelerate VAV1 molecular glue discovery.
    Article Snippet: Wildtype human full-length VAV1 gene fused with N-terminal nLuc was synthesized and cloned into pRP[Exp]-Puro-CMVby VectorBuilder Inc. Wildtype human full-length LIMD1 cDNA was obtained from the Advanced Cell Engineering & 3D Models Core at Baylor College of Medicine and cloned into the same backbone by replacing VAV1. .. PCR amplicons were obtained using KOD One (Sigma, KMM-101NV) with specified mutagenesis PCR primer pairs (manufactured by Integrated DNA Technologies, Inc.) in the Table 1, followed by DpnI digestion (New England Biolabs, R0176S) and PCR product clean-up using FastPure gel extraction kit (Vazyme, DC301-01). .. Both site-directed mutagenesis and domain truncation were performed using ClonExpress Ultra One Step Cloning Kit V2 (Vazyme, C116-01) under 50 °C for 15min.

    Article Title: Geometry of braided DNA dictates supercoiling partitioning.
    Article Snippet: This intermediate plasmid had an unwanted Nt.BbvCI (NEB, R0632) recognition sequence on top of four that was included by design. .. This site was removed using site directed mutagenesis, first using PCR amplification from the intermediate plasmid with primers (KLD nickRemoval F, KLD nickRemoval R, Supplementary Table 4), followed by a KLD reaction on the PCR product with T4 PNK (NEB, M0201S), T4 ligase (NEB, M0202S), and DpnI (NEB, R0176S). ..

    Article Title: ATHENA: a dynamic metabolic hub balancing carbon economy and energy supply in microbial synthesis
    Article Snippet: .. Briefly, mutagenesis was generated by inverse PCR of the plasmid using the corresponding primers, and the PCR product digested by DpnI (New England Biolabs, USA) was transformed into E. coli DH5α. ..

    Gel Extraction:

    Article Title: Leveraging high-throughput proteomics and AI-based protein folding to accelerate VAV1 molecular glue discovery.
    Article Snippet: Wildtype human full-length VAV1 gene fused with N-terminal nLuc was synthesized and cloned into pRP[Exp]-Puro-CMVby VectorBuilder Inc. Wildtype human full-length LIMD1 cDNA was obtained from the Advanced Cell Engineering & 3D Models Core at Baylor College of Medicine and cloned into the same backbone by replacing VAV1. .. PCR amplicons were obtained using KOD One (Sigma, KMM-101NV) with specified mutagenesis PCR primer pairs (manufactured by Integrated DNA Technologies, Inc.) in the Table 1, followed by DpnI digestion (New England Biolabs, R0176S) and PCR product clean-up using FastPure gel extraction kit (Vazyme, DC301-01). .. Both site-directed mutagenesis and domain truncation were performed using ClonExpress Ultra One Step Cloning Kit V2 (Vazyme, C116-01) under 50 °C for 15min.

    Plasmid Preparation:

    Article Title: Geometry of braided DNA dictates supercoiling partitioning.
    Article Snippet: This intermediate plasmid had an unwanted Nt.BbvCI (NEB, R0632) recognition sequence on top of four that was included by design. .. This site was removed using site directed mutagenesis, first using PCR amplification from the intermediate plasmid with primers (KLD nickRemoval F, KLD nickRemoval R, Supplementary Table 4), followed by a KLD reaction on the PCR product with T4 PNK (NEB, M0201S), T4 ligase (NEB, M0202S), and DpnI (NEB, R0176S). ..

    Article Title: ATHENA: a dynamic metabolic hub balancing carbon economy and energy supply in microbial synthesis
    Article Snippet: .. Briefly, mutagenesis was generated by inverse PCR of the plasmid using the corresponding primers, and the PCR product digested by DpnI (New England Biolabs, USA) was transformed into E. coli DH5α. ..

    Gel Electrophoresis:

    Article Title: Design of a chimeric probe specific to K48-K63-linked heterotypic ubiquitin chains
    Article Snippet: .. AR TIC LE IN PR ES S ARTICLE IN PRESS confirmed by gel electrophoresis and treated with DpnI enzyme (New England Biolabs). .. 1 μL (10 units) DpnI was directly added to the PCR reaction mixture along with the rCutSmartTM Buffer (New England Biolabs), and the mixture was incubated at 37 °C for 1 hour.

    Generated:

    Article Title: ATHENA: a dynamic metabolic hub balancing carbon economy and energy supply in microbial synthesis
    Article Snippet: .. Briefly, mutagenesis was generated by inverse PCR of the plasmid using the corresponding primers, and the PCR product digested by DpnI (New England Biolabs, USA) was transformed into E. coli DH5α. ..

    Inverse PCR:

    Article Title: ATHENA: a dynamic metabolic hub balancing carbon economy and energy supply in microbial synthesis
    Article Snippet: .. Briefly, mutagenesis was generated by inverse PCR of the plasmid using the corresponding primers, and the PCR product digested by DpnI (New England Biolabs, USA) was transformed into E. coli DH5α. ..



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