program package protean 3d (DNASTAR)

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DNASTAR program package protean 3d
Program Package Protean 3d, supplied by DNASTAR, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protean+3d+program/protean+3d/pm39251007-193-10-10
Average 90 stars, based on 1 article reviews

program package protean 3d - by Bioz Stars, 2026-11

90/100 stars

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Article Title: Predicting Antigenic Peptides from Rocio Virus NS1 Protein for Immunodiagnostic Testing Using Immunoinformatics and Molecular Dynamics Simulation
Article Snippet: Antigenicity: Welling, DNASTAR Protean 3D , 26, 30–40, 44–48, 51, 61–62, 66, 72–73, 89, 91, 94–104, 145, 168, 170–174, 191–197, 210, 213, 250–261, 264, 295–301, 303, 341–342, 349–353.

Article Title: Two missense mutations in GPNMB cause autosomal recessive amyloidosis cutis dyschromica in the consanguineous pakistani families.
Article Snippet: Background Amyloidosis cutis dyschromica (ACD) is a rare variant of cutaneous amyloidosis.. This disorder often clusters in families, and it has been suggested that genetic factors might be involved in its development.. Objective To identify the genetic causes of ACD, we recruited a consanguineous Pakistani family with multiple cases of ACD that display a recessive mode of inheritance.

Article Title: Predicting Antigenic Peptides from Rocio Virus NS1 Protein for Immunodiagnostic Testing Using Immunoinformatics and Molecular Dynamics Simulation
Article Snippet: Antigenicity: Jameson–Wolf, DNASTAR Protean 3D , 1–4, 11–17, 24–25, 28–42, 49–54, 59–62, 106–109, 118–119, 136–146, 171–177, 189–191, 203–209, 220–224, 235–241, 249–273, 279–289, 291–295, 302–309, 313, 316–318, 320, 324–328, 335–345.

Virus:

Article Title: Viral RNA Metagenomics of Hyalomma Ticks Collected from Dromedary Camels in Makkah Province, Saudi Arabia
Article Snippet: .. The following are available online at https://www.mdpi.com/article/10.3390/v13071396/s1 , Figure S1: BLOSUM62 score showing substitutions between the newly identified Guertu virus in Saudi Arabia and the strain (YP_009666940.1) identified in China (Software: Protean 3D, DNASTAR), Figure S2: Phylogentic trees of viruses that have not been associated with human diseases. ..

Software:

Pore Size:

Article Title: Kir7.1 disease mutant T153I within the inner pore affects K + conduction.
Article Snippet: .. To determine the effect of single amino acid substitutions at position 153 on pore size, we used Protean 3D (DNASTAR, Madison, WI) (21) with the previously developed Kir2.2-based homology model of wild-type Kir7.1 (Uniprot ID: 060928) (22). ..

Activity Assay:

Article Title: AbAMPdb: a database of Acinetobacter baumannii specific antimicrobial peptides
Article Snippet: .. Total 14 physicochemical parameters were analysed using the R peptide package [ ] ( https://cran.r-project.org/web/packages/Peptides/index.html (accessed on 15 January 2023)] that is specifically designed for AMPs, protean 3D [ ] [ https://www.dnastar.com/software/lasergene/protean-3d/ (accessed on 20 January 2022)], ProtParam tool [ ] [ https://web.expasy.org/protparam/ (accessed on 22 January 2022)], Amplify [ ] [ https://github.com/bcgsc/AMPlify (accessed on 30 January 2022)] is a deep learning python based package used to predict the antimicrobial activity of AMP, HemoPI [ ] [ https://webs.iiitd.edu.in/raghava/hemopi/standalone.php (accessed on 5 February 2022)] is a java based standalone tool to predict haemolytic activity of peptide without the limitation of number of amino acid residues and petide.bio [ ] v0.19.0 [ https://peptide.bio/ accessed on 5 November 2023) for haemolytic activity prediction of experimental AMPs due to their exceeded length and cannot be predicted by HemoPI and ToxinPred server [ ] [ http://crdd.osdd.net/raghava/toxinpred/ (accessed on 5 February 2022)]. ..

Review