protean 3d program (DNASTAR)

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DNASTAR protean 3d program
Protean 3d Program, supplied by DNASTAR, used in various techniques. Bioz Stars score: 95/100, based on 90 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/protean+3d+program/Protean+3D/pm29391553-229-7-10
Average 95 stars, based on 90 article reviews

protean 3d program - by Bioz Stars, 2026-10

95/100 stars

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Software:

Article Title: Protein nanoparticle-based vaccine candidate produced in Nicotiana benthamiana against non-typhoidal Salmonella enterica in poultry
Article Snippet: .. The antigenic peptides of S. Enteritidis FepA, predicted using the DNAStar software, Protean 3D package, typically fell within the 10–20 residue range, balancing immunogenicity and specificity ( ; ). ..

Article Title: Protein nanoparticle-based vaccine candidate produced in Nicotiana benthamiana against non-typhoidal Salmonella enterica in poultry
Article Snippet: .. DNAStar software, Protean 3D package (DNASTAR, Inc., Madison, WI, USA), was used to predict Salmonella FepA antigenic peptides, employing criteria such as sequence length, hydrophilicity/hydrophobicity, surface orientation, and flexibility, along with B-cell epitope, T-cell epitope, and major histocompatibility class II (MHC II) epitope predictions. ..

Article Title: The recombinant expression of egg yolk allergen vitelline glycoprotein 42 (gal d 6) and the effect of high-pressure assisted thermal processing on its allergenicity.
Article Snippet: Gal d 6 is a major allergen in egg yolk.. In this study, Gal d 6 was recombined using Escherichia coli, and rGal d 6 showed good immunoreactivity.. Bioinformatics analysis and mass spectrometry identified four B cell linear epitopes: AA59–63, AA94–104, AA227–234, and AA262–268.

Article Title: Protein nanoparticle-based vaccine candidate produced in Nicotiana benthamiana against non-typhoidal Salmonella enterica in poultry
Article Snippet: .. In our research, we utilized the DNAStar software, specifically the Protean 3D package, to predict additional antigenic peptides that were previously undetected. .. Previous studies have demonstrated the effective use of DNAStar in predicting antigenic peptides , highlighting its reliability and accuracy.

Residue:

Immunopeptidomics:

Article Title: Protein nanoparticle-based vaccine candidate produced in Nicotiana benthamiana against non-typhoidal Salmonella enterica in poultry
Article Snippet: .. DNAStar software, Protean 3D package (DNASTAR, Inc., Madison, WI, USA), was used to predict Salmonella FepA antigenic peptides, employing criteria such as sequence length, hydrophilicity/hydrophobicity, surface orientation, and flexibility, along with B-cell epitope, T-cell epitope, and major histocompatibility class II (MHC II) epitope predictions. ..

Sequencing:

Article Title: Protein nanoparticle-based vaccine candidate produced in Nicotiana benthamiana against non-typhoidal Salmonella enterica in poultry
Article Snippet: .. DNAStar software, Protean 3D package (DNASTAR, Inc., Madison, WI, USA), was used to predict Salmonella FepA antigenic peptides, employing criteria such as sequence length, hydrophilicity/hydrophobicity, surface orientation, and flexibility, along with B-cell epitope, T-cell epitope, and major histocompatibility class II (MHC II) epitope predictions. ..

other:

Article Title: Cytotoxic and immunomodulatory activity of CD151-LEL-based peptides in breast cancer and THP-1 cells.
Article Snippet: CD151, a cell surface oncoprotein belongs to the tetraspanin family, drives metastasis, drug resistance, and immune escape, and is recognized as a tumor-associated antigen (TAA).. In the screening phase, a positive correlation between CD151 expression and amplification of CCND1, ERBB2, and MYC genes as well with breast cancer (BC) metastasis was observed using data from different GEO datasets.. This study identified three immunogenic peptides within the large extracellular loop (LEL) of CD151 using in silico approaches: one each of CTL and HTL epitope, which bind strongly to class I and II MHC molecules, and one B-cell epitope, eliciting a robust IgG immune response.

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