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SourceForge net program codon w version 1.3
Program Codon W Version 1.3, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/program+codon+w+version+1%2E3/codon+w1+4+2/ppr0506844-53-4-9
Average 90 stars, based on 1 article reviews
program codon w version 1.3 - by Bioz Stars, 2026-09
90/100 stars

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Article Title: Analysis of transcriptome data reveals multifactor constraint on codon usage in Taenia multiceps
Article Snippet: The following programs were used in this study: Codon W (Ver.1.4.2) ( http://sourceforge.net/projects/codonw/ ), CHIPS ( http://emboss.sourceforge.net/apps/release/6.6/emboss/apps/chips.html ), and CUSP ( http://emboss.sourceforge.net/apps/release/6.6/emboss/apps/cusp.html ).

Article Title: Complete genome sequencing and comparative genomic analyses of Bacillus sp. S3, a novel hyper Sb(III)-oxidizing bacterium
Article Snippet: The CAI values of selected genes were analyzed using Codon W1.4.2 ( http://codonw.sourceforge.net// ) and CAI Calculator 2 ( http://www.evolvingcode.net/codon/CalculateCAIs.php ).

Article Title: Analysis of codon usage patterns of the chloroplast genome in Delphinium grandiflorum L. reveals a preference for AT-ending codons as a result of major selection constraints
Article Snippet: A number of the codon usage indicators were estimated via the program codon W version 1.3 ( https://sourceforge.net/projects/codonw/ ), including the relative synonymous codon usage value (RSCU), the effective number of codons (ENC), G + C content of the gene (GC), the frequency of the nucleotides G + C at the 3rd position of synonymous codons (GC 3s ), and the base compositions (A 3s , T 3s , G 3s , and C 3s ) ( ; ; ).

Article Title: The characteristic of Arachis duranensis-specific genes and their potential function.
Article Snippet: Arachis species produce flowers aerially, and then grow into the ground, where they develop into fruits; a feature that is unique to Arachis species.. We hypothesized that Arachis species evolved genes specifically involved in the control of aerial flowers and the formation of underground fruits.. Arachis duranensis is more resistant to biotic and abiotic stressors.

Article Title: Complete chloroplast genome of Calligonum mongolicum Turcz. and comparative analysis with other Calligonum species
Article Snippet: The perennial shrub of Calligonum mongolicum Turcz. is a dominant native plant in all Calligonum species, which has the largest and most widespread geographic distribution in arid deserts of northern China.. Understanding the phylogenetic relationship between C. mongolicum and closely related plant species will offer guidance on the classification and identification of inter-species and their varieties.. The chloroplast (cp) genome is an optimal model to decipher phylogenetic relationships in related plant families.

Article Title: Comprehensive Analysis of Codon Usage Bias in Seven Epichloë Species and Their Peramine-Coding Genes
Article Snippet: Codon W (version 1.4, http://codonw.sourceforge.net ) was used to calculate the codon adaptation index (CAI), effective number of codon (ENC), relative synonymous codon usage (RSCU), and CDS length.

Article Title: Complete chloroplast genome sequences of Gynostemma guangxiense: genome structure, codon usage bias and phylogenetic relationships in Gynostemma (Cucurbitaceae)
Article Snippet: In our study, the program codon W version 1.3 (https://sourceforge.net/projects/codonw/) was used to caculate the codon usage indicators, including the relative synonymous codon usage value (RSCU: the ratio between the observed frequency and the expected frequency of a speci c codon (Sharp and Li 1987), the effective number of codons (ENC), G+C content of the gene (GC), the frequency of the nucleotides G+C at the 3rd position of synonymous codons (GC3s) and the base compositions (A3s, T3s, G3s, and C3s) (Sharp and Li 1987).

Article Title: The entire chloroplast genome sequence of Asparagus setaceus (Kunth) Jessop: Genome structure, gene composition, and phylogenetic analysis in Asparagaceae
Article Snippet: The relative synonymous codon usage (RSCU) was calculated in the cp genome of A. setaceus with Codon W1.4.2 ( https://sourceforge.net/projects/codonw/files/OldFiles/CodonWSourceCode_1_4_2.tar.gz/download ).



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SourceForge net program codon w version 1.3
Program Codon W Version 1.3, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/program+codon+w+version+1%2E3/codon+w1+4+2/ppr0506844-53-4-9
Average 90 stars, based on 1 article reviews
program codon w version 1.3 - by Bioz Stars, 2026-09
90/100 stars
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