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alphafold2 software program  (InterPro Inc)

 
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    Structured Review

    InterPro Inc alphafold2 software program
    Modeled structure of the RhoGAP domains of ArhGAP21, ArhGAP23, and DmRhoGAP19D. (a) Schematic representation of ArhGAP21 and ArhGAP23 (orange box: PDZ domain, blue box: PH domain, green box: RhoGAP domain). UniProt and GenBank IDs are as follows: ArhGAP21: Q5T5U3-1/NM_20824.4; ArhGAP23: Q9P227-1/NM_001199417.2; and DmRhoGAP19D: Q9VRA6/NM_134552.6. (b) Modeled structure of the RhoGAP domain by homology modeling. RhoGAP domains are colored from the N-terminus (blue) to the C-terminus (red). (c) The modeled structure of the ArhGAP21 domain was superimposed over the RhoGAP domain of ArhGAP23. (d) Modeled structure of the RhoGAP domain generated by <t>AlphaFold2.</t> (e) The modeled structure of the ArhGAP21 RhoGAP domain was superimposed over the RhoGAP domain of ArhGAP23. The modeled structure was evaluated by PROCHECK and ERRAT and visualized by the UCSF Chimera software program, version 1.15 ( http://www.cgl.ucsf.edu/chimera ).
    Alphafold2 Software Program, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/program+alphafold2/pmc10249030-98-19-10?v=InterPro+Inc
    Average 90 stars, based on 1 article reviews
    alphafold2 software program - by Bioz Stars, 2026-08
    90/100 stars

    Images

    1) Product Images from "A Structural Network Analysis of Neuronal ArhGAP21/23 Interactors by Computational Modeling"

    Article Title: A Structural Network Analysis of Neuronal ArhGAP21/23 Interactors by Computational Modeling

    Journal: ACS Omega

    doi: 10.1021/acsomega.2c08054

    Modeled structure of the RhoGAP domains of ArhGAP21, ArhGAP23, and DmRhoGAP19D. (a) Schematic representation of ArhGAP21 and ArhGAP23 (orange box: PDZ domain, blue box: PH domain, green box: RhoGAP domain). UniProt and GenBank IDs are as follows: ArhGAP21: Q5T5U3-1/NM_20824.4; ArhGAP23: Q9P227-1/NM_001199417.2; and DmRhoGAP19D: Q9VRA6/NM_134552.6. (b) Modeled structure of the RhoGAP domain by homology modeling. RhoGAP domains are colored from the N-terminus (blue) to the C-terminus (red). (c) The modeled structure of the ArhGAP21 domain was superimposed over the RhoGAP domain of ArhGAP23. (d) Modeled structure of the RhoGAP domain generated by AlphaFold2. (e) The modeled structure of the ArhGAP21 RhoGAP domain was superimposed over the RhoGAP domain of ArhGAP23. The modeled structure was evaluated by PROCHECK and ERRAT and visualized by the UCSF Chimera software program, version 1.15 ( http://www.cgl.ucsf.edu/chimera ).
    Figure Legend Snippet: Modeled structure of the RhoGAP domains of ArhGAP21, ArhGAP23, and DmRhoGAP19D. (a) Schematic representation of ArhGAP21 and ArhGAP23 (orange box: PDZ domain, blue box: PH domain, green box: RhoGAP domain). UniProt and GenBank IDs are as follows: ArhGAP21: Q5T5U3-1/NM_20824.4; ArhGAP23: Q9P227-1/NM_001199417.2; and DmRhoGAP19D: Q9VRA6/NM_134552.6. (b) Modeled structure of the RhoGAP domain by homology modeling. RhoGAP domains are colored from the N-terminus (blue) to the C-terminus (red). (c) The modeled structure of the ArhGAP21 domain was superimposed over the RhoGAP domain of ArhGAP23. (d) Modeled structure of the RhoGAP domain generated by AlphaFold2. (e) The modeled structure of the ArhGAP21 RhoGAP domain was superimposed over the RhoGAP domain of ArhGAP23. The modeled structure was evaluated by PROCHECK and ERRAT and visualized by the UCSF Chimera software program, version 1.15 ( http://www.cgl.ucsf.edu/chimera ).

    Techniques Used: Generated, Software



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    Image Search Results


    Relevant hits from AlphaFold2 predicted structures of Deep-Blue and Vp4 tail proteins submitted to the Dali server to retrieve related structures

    Journal: Journal of Virology

    Article Title: Deciphering the adsorption machinery of Deep-Blue and Vp4, two myophages targeting members of the Bacillus cereus group

    doi: 10.1128/jvi.00745-24

    Figure Lengend Snippet: Relevant hits from AlphaFold2 predicted structures of Deep-Blue and Vp4 tail proteins submitted to the Dali server to retrieve related structures

    Article Snippet: Recently, the DeepMind’s machine-learning protein structure prediction program AlphaFold2 (AF2) ( ) has been proven to be extremely valuable in obtaining structures of phage tail proteins and of their complexes, as exemplified by the baseplate structure predictions of a few siphophages ( ).

    Techniques: Injection, Membrane