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Blackwell Science Ltd phylogenetic dendrograms
Phylogenetic Dendrograms, supplied by Blackwell Science Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Article Title: Contrasting patterns of mitochondrial DNA and microsatellite introgressive hybridization between lineages of lake whitefish (Coregonus clupeaformis); relevance for speciation.
Article Snippet: We performed a combined analysis of mitochondrial DNA (mtDNA) and microsatellite loci among lake whitefish ( Coregonus clupeaformis ) populations in order to assess the levels of congruence between both types of markers in defining patterns of genetic structuring, introgressive hybridization and inferring population origins in the hybrid zone of the St. John River basin.. A second objective was to test the hypothesis that secondary contact between glacial lineages always resulted in the occurrence of sympatric dwarf and normal whitefish ecotypes.. Fish were sampled from 35 populations and polymorphism was screened at mtDNA and six microsatellite loci for a total of 688 and 763 whitefish, respectively.

Article Title: Transcript profiling of human dendritic cells maturation-induced under defined culture conditions: comparison of the effects of tumour necrosis factor alpha, soluble CD40 ligand trimer and interferon gamma.
Article Snippet: Examination of the dendrogram (x axis above figure) obtained by cluster analysis q 2001 Blackwell Science Ltd, British Journal of Haematology 114: 444±457 shows that the cell populations studied could be categorized into two main families.

Article Title: The forests of presettlement New England, USA: spatial and compositional patterns based on town proprietor surveys
Article Snippet: Aim This study uses the combination of presettlement tree surveys and spatial analysis to produce an empirical reconstruction of tree species abundance and vegetation units at different scales in the original landscape.. Location The New England study area extends across eight physiographic sections, from the Appalachian Mountains to the Atlantic Coastal Plain.. The data are drawn from 389 original towns in what are now seven states in the north-eastern United States.

Article Title: Phylogenetic analysis of a group of palaeonemerteans (Nemertea) including two new species from Queensland and the Great Barrier Reef, Australia
Article Snippet: 279 Sundberg, P., Gibson, R. & Olsson, U. (2003).. Phylogenetic analysis of a group of palaeonemerteans (Nemertea) including two new species from Queensland and the Great Barrier Reef, Australia.. — Zoologica Scripta, 32, 279–296.

Article Title: Molecular phylogenetic analyses of reverse-transcribed bacterial rRNA obtained from deep-sea cold seep sediments.
Article Snippet: Recent progress in culture-independent molecular phylogenetic surveys using PCR-mediated rDNA sequence has revealed a great diversity of naturally occurring microbial habitats (Giovannoni et al., 1990; DeLong, 1992; Fuhrman et al., 1992; Pace, 1997).. The molecular ecological approach facilitates detection and identification of microbial components even in deep-sea extreme environments (Kato et al., 1997; Hinrichs et al., 1999; Takai and Horikoshi, 1999; Vetriani et al., 1999; Inagaki et al., 2001; Takai et al., 2001; Inagaki et al., 2002).. Some explorations of the deep sea floor have focused on the ‘cold seep’ area where the hydrocarbon-rich reductive cold water seeps along the fault from the subseafloor zone (Ohta and Laubier, 1987).

Generated:

Article Title: Unique regulation of SclB - a novel collagen-like surface protein of Streptococcus pyogenes.
Article Snippet: .. This identity tree showed little similarity to phylogenetic dendrograms generated for the hypervariable N-terminal part of different Q 2001 Blackwell Science Ltd, Molecular Microbiology, 40, 1427–1438 M proteins (Whatmore et al., 1994). ..

Sequencing:

Article Title: Diversity and distribution of a deeply branched novel proteobacterial group found in anaerobic-aerobic activated sludge processes.
Article Snippet: A novel coccobacilli group found previously in enhanced biological phosphorus removal (EBPR) systems was further revealed to have a high degree of diversity and distribution in various activated sludge systems.. Phylogenetic analysis based on 14 existing and 18 newly retrieved 16S rRNA sequences revealed that these sequences formed a novel cohesive cluster with seven subgroups in the g Proteobacteria .. Fluorescence in situ hybridization with a set of probes designed specifically targeting the novel group at different hierarchical levels showed that the novel group with a coccoid (2–4 m m) to occasionally long-rod (up to 20 m m) shape widely distributed and in some cases predominated in sludge samples taken from nine laband full-scale EBPR systems (10–50% of total cells) and four conventional activated sludge systems (1–10%).

Comparison:

Article Title: Pseudomonas aeruginosa displays an epidemic population structure.
Article Snippet: .. In the dendrogram based on the comparison of the composite data set (Fig. 4), we clearly observed © 2002 Blackwell Science Ltd, Environmental Microbiology, 4, 898–911 © 2002 Blackwell Science Ltd, Environmental Microbiology, 4, 898–911 seven distinct clonal complexes (CCs) with ≥80% similarity. ..



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Phylogenetic dendrogram of 18S rRNA sequences showing that our isolate was identical to the ATCC strain of S. cerevisiae and differed from eight other closely related fungal species.

Journal:

Article Title: Fatal Saccharomyces cerevisiae Aortic Graft Infection

doi: 10.1128/JCM.40.7.2691-2692.2002

Figure Lengend Snippet: Phylogenetic dendrogram of 18S rRNA sequences showing that our isolate was identical to the ATCC strain of S. cerevisiae and differed from eight other closely related fungal species.

Article Snippet: Because it was phenotypically identical to the previous isolate, we did not repeat the rRNA sequencing; therefore, we cannot completely exclude the possibility that he was superinfected with a second species of Saccharomyces , but this is unlikely. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG. 1. caption a7 Phylogenetic dendrogram of 18S rRNA sequences showing that our isolate was identical to the ATCC strain of S. cerevisiae and differed from eight other closely related fungal species.

Techniques: