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Biotechnology Information phred/phrap/consed software package
Phred/Phrap/Consed Software Package, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/phrap/blast+package/pm29273286-22-7-22
Average 90 stars, based on 1 article reviews
phred/phrap/consed software package - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

other:

Article Title: Predominance of antibody-resistant SARS-CoV-2 variants in vaccine breakthrough cases from the San Francisco Bay Area, California.
Article Snippet: Raw FASTQ files were first screened for SARS-CoV-2 sequences using BLASTn (BLAST + package 2.9.0) and were aligned against the Wuhan-Hu-1 SARS-CoV-2 reference genome (National Center for Biotechnology Information (NCBI) GenBank accession number NC_045512.2).

Article Title: Genetic analysis of virulence and antimicrobial-resistant plasmid pOU7519 in Salmonella enterica serovar Choleraesuis.
Article Snippet: Nucleotide assembly and annotation were performed by Phred/Phrap/Consed Software Package (http://www.phrap.org/phredphrapconsed.html), NCBI Prokaryotic Genomes Automatic Annotation Pipeline (http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline. html, National Center for Biotechnology Information, Bethesda, MD, USA), DNASTAR Lasergene software (Madison, WI, USA) and the BLAST (http://blast.ncbi.nlm. nih.gov/; Basic Local Alignment Search Tool, National Center for Biotechnology Information, Bethesda, MD, USA).

Article Title: Genome sequencing and identification of cellulase genes in Bacillus paralicheniformis strains from the Red Sea
Article Snippet: To perform the MLST analysis, the protein sequences of twenty-two different Bacillus species (Table S ) were obtained from the assembly database at the National Center for Biotechnology Information ( https://www.ncbi.nlm.nih.gov/ ) and converted to the database format with the makeblastdb program of the Blast + package version 2.2.31 [ ].

Software:

Article Title: Antibiotic Resistance in Metal-Tolerant Microorganisms from Treatment Facilities
Article Snippet: .. Initial phylogenetic screening for the similarity of the 16S rRNA gene nucleotide sequences was carried out in the GenBank database (National Center for Biotechnology Information), using the BLAST software package. ..

Article Title: Antibiotic Resistance in Metal-Tolerant Microorganisms from Treatment Facilities.
Article Snippet: .. Initial phylogenetic screening for the similarity of the 16S rRNA gene nucleotide sequences was carried out in the GenBank database (National Center for Biotechnology Information), using the BLAST software package. ..

Article Title: A capacitive DNA sensor for sensitive detection of Escherichia coli O157:H7 in potable water based on the z3276 genetic marker: fabrication and analytical performance.
Article Snippet: We report a label-free biosensor for the detection of Escherichia coli O157:H7 ATCC 43895 in potable water using a newly designed DNA sensing probe targeting the z3276 genetic marker.. The surface of indium tin oxide (ITO) was functionalized with the novel sensing probe by covalent coupling using APTES as a crosslinker to fabricate the DNA sensor (dubbed ZEC [z ̲3276 gene of E̲. c̲oli O157:H7 ATCC 43895]).. The electrochemical characterization of the fabricated ZEC sensor was performed using cyclic voltammetry and electrochemical impedance spectroscopy.

Article Title: Luciferases and methods for using same
Article Snippet: .. For the purposes of the present invention, comparison of nucleotide and amino acid sequences by means of Blast software package provided by the National Center for Biotechnology Information using gapped alignment with standard parameters can be used to determine the degree of identity and similarity between the nucleotide sequences and amino acid sequences. ..

Marker:

Article Title: A capacitive DNA sensor for sensitive detection of Escherichia coli O157:H7 in potable water based on the z3276 genetic marker: fabrication and analytical performance.
Article Snippet: We report a label-free biosensor for the detection of Escherichia coli O157:H7 ATCC 43895 in potable water using a newly designed DNA sensing probe targeting the z3276 genetic marker.. The surface of indium tin oxide (ITO) was functionalized with the novel sensing probe by covalent coupling using APTES as a crosslinker to fabricate the DNA sensor (dubbed ZEC [z ̲3276 gene of E̲. c̲oli O157:H7 ATCC 43895]).. The electrochemical characterization of the fabricated ZEC sensor was performed using cyclic voltammetry and electrochemical impedance spectroscopy.

Comparison:

Article Title: Luciferases and methods for using same
Article Snippet: .. For the purposes of the present invention, comparison of nucleotide and amino acid sequences by means of Blast software package provided by the National Center for Biotechnology Information using gapped alignment with standard parameters can be used to determine the degree of identity and similarity between the nucleotide sequences and amino acid sequences. ..



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