Review




Structured Review

Ridom GmbH bionumerics
Bionumerics, supplied by Ridom GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pattern+analysis+software+package+bionumerics/bionumerics/pm36553467-137-22-23
Average 90 stars, based on 1 article reviews
bionumerics - by Bioz Stars, 2026-09
90/100 stars

Images

Related Articles

Software:

Article Title: Multi Locus Sequence Typing and spa Typing of Staphylococcus aureus Isolated from the Milk of Cows with Subclinical Mastitis in Croatia
Article Snippet: Methods: Sequencing amplified gene sequences was conducted at Macrogen Europe. .. Ridom StaphType and BioNumerics software was used to analyze obtained sequences of spa and seven housekeeping genes. ..

Article Title: Make It Less difficile : Understanding Genetic Evolution and Global Spread of Clostridioides difficile
Article Snippet: .. Three publicly available schemes for C. difficile are available for cg- and/or wgMLST typing, and analysis can be performed using commercial software (e.g., BioNumerics, Ridom) or freely accessible online resources (e.g., EnteroBase). ..

Article Title: An Open-Source Program (Haplo-ST) for Whole-Genome Sequence Typing Shows Extensive Diversity among Listeria monocytogenes Isolates in Outdoor Environments and Poultry Processing Plants
Article Snippet: .. However, larger-scale studies of the extent of genetic variation existing between persistent and transient strains are still needed. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG 1 caption a7 Haplo-ST, a tool for wgMLST profiling of Listeria monocytogenes from WGS reads. table ft1 table-wrap mode="anchored" t5 TABLE 1 caption a7 Parameter Current wgMLST-based approaches for strain typing Haplo-ST BioNumerics Ridom SeqSphere+ Free availability No No Yes Database used for allelic nomenclature BIGSdb- Lm cgMLST.org BIGSdb- Lm Creates genome assemblies of isolates before allele calling Uses both assembly-based and assembly-free approaches Yes No (assembles genes instead of genomes) Expandable wgMLST schema No No Yes No. of loci used for wgMLST 4,804, fixed 1,701 (cgMLST) + 1,158 (accessory genome), fixed Currently 2,554, expandable Output wgMLST profiles, MST a wgMLST profiles, MST wgMLST profiles, allele sequences for wgMLST profiles, paralogous genes Cluster analysis features included with software Yes Yes No Types of cluster analysis possible MST MST, phylogenetic tree (software only provides concatenated allele sequences) Dendrograms and phylogenetic trees can be constructed with third-party software Can be used for strain typing of species other than L. monocytogenes Yes Yes Yes Automated curation tools (for assigning allele IDs) provided for new alleles Yes Yes No Open in a separate window a MST, minimum spanning tree. ..

Article Title: Make It Less difficile : Understanding Genetic Evolution and Global Spread of Clostridioides difficile .
Article Snippet: .. Three publicly available schemes for C. difficile are available for cgand/or wgMLST typing, and analysis can be performed using commercial software (e.g., BioNumerics, Ridom) or freely accessible online resources (e.g., EnteroBase). ..

Article Title: An Open-Source Program (Haplo-ST) for Whole-Genome Sequence Typing Shows Extensive Diversity among Listeria monocytogenes Isolates in Outdoor Environments and Poultry Processing Plants
Article Snippet: .. 784 Current wgMLST-based approaches for strain typing Haplo-ST BioNumerics Ridom SeqSphere+ Free availability û û ü Database used for allelic nomenclature BIGSdb-Lm cgMLST.org BIGSdb-Lm Creates genomes assemblies of isolates before allele calling Uses both assemblybased and assembly- free approaches ü û (assembles genes instead of genomes) Expandable wgMLST schema û û ü Number of loci used for wgMLST 4804, fixed 1701 (cgMLST) + 1158 (accessory genome), fixed currently 2554, expandable Output wgMLST profiles, minimum spanning tree (MST) wgMLST profiles, MST wgMLST profiles, allele sequences for wgMLST profiles, paralogous genes Cluster analysis features included with software ü ü û Types of cluster analysis possible MST MST, phylogenetic tree (software only Dendrograms and phylogenetic trees can be constructed on D ecem ber 3, 2020 by guest http://aem .asm .org/ D ow nloaded from provides concatenated allele sequences) with third-party software Can be used for strain typing of species other than Listeria monocytogenes ü ü ü Automated curation tools (for assigning allele ID’s) provided for new alleles ü ü û 785 on D ecem ber 3, 2020 by guest http://aem .asm .org/ D ow nloaded from monocytogenes isolates. ..

Article Title: Outcome of EC/EFSA questionnaire (2016) on use of Whole Genome Sequencing (WGS) for food‐ and waterborne pathogens isolated from animals, food, feed and related environmental samples in EU/EFTA countries
Article Snippet: .. In house developed pipeline/ Commercially available software (e.g. BioNumerics , SeqSphere Ridom GmbH )/ Open source platform (e.g. Galaxy, Trimmomatic)/ Custom pipelines of different tools and software (e.g. CGE ). ..

Construct:

Article Title: An Open-Source Program (Haplo-ST) for Whole-Genome Sequence Typing Shows Extensive Diversity among Listeria monocytogenes Isolates in Outdoor Environments and Poultry Processing Plants
Article Snippet: .. However, larger-scale studies of the extent of genetic variation existing between persistent and transient strains are still needed. fig ft0 fig mode=article f1 fig/graphic|fig/alternatives/graphic mode="anchored" m1 Open in a separate window FIG 1 caption a7 Haplo-ST, a tool for wgMLST profiling of Listeria monocytogenes from WGS reads. table ft1 table-wrap mode="anchored" t5 TABLE 1 caption a7 Parameter Current wgMLST-based approaches for strain typing Haplo-ST BioNumerics Ridom SeqSphere+ Free availability No No Yes Database used for allelic nomenclature BIGSdb- Lm cgMLST.org BIGSdb- Lm Creates genome assemblies of isolates before allele calling Uses both assembly-based and assembly-free approaches Yes No (assembles genes instead of genomes) Expandable wgMLST schema No No Yes No. of loci used for wgMLST 4,804, fixed 1,701 (cgMLST) + 1,158 (accessory genome), fixed Currently 2,554, expandable Output wgMLST profiles, MST a wgMLST profiles, MST wgMLST profiles, allele sequences for wgMLST profiles, paralogous genes Cluster analysis features included with software Yes Yes No Types of cluster analysis possible MST MST, phylogenetic tree (software only provides concatenated allele sequences) Dendrograms and phylogenetic trees can be constructed with third-party software Can be used for strain typing of species other than L. monocytogenes Yes Yes Yes Automated curation tools (for assigning allele IDs) provided for new alleles Yes Yes No Open in a separate window a MST, minimum spanning tree. ..

Article Title: An Open-Source Program (Haplo-ST) for Whole-Genome Sequence Typing Shows Extensive Diversity among Listeria monocytogenes Isolates in Outdoor Environments and Poultry Processing Plants
Article Snippet: .. 784 Current wgMLST-based approaches for strain typing Haplo-ST BioNumerics Ridom SeqSphere+ Free availability û û ü Database used for allelic nomenclature BIGSdb-Lm cgMLST.org BIGSdb-Lm Creates genomes assemblies of isolates before allele calling Uses both assemblybased and assembly- free approaches ü û (assembles genes instead of genomes) Expandable wgMLST schema û û ü Number of loci used for wgMLST 4804, fixed 1701 (cgMLST) + 1158 (accessory genome), fixed currently 2554, expandable Output wgMLST profiles, minimum spanning tree (MST) wgMLST profiles, MST wgMLST profiles, allele sequences for wgMLST profiles, paralogous genes Cluster analysis features included with software ü ü û Types of cluster analysis possible MST MST, phylogenetic tree (software only Dendrograms and phylogenetic trees can be constructed on D ecem ber 3, 2020 by guest http://aem .asm .org/ D ow nloaded from provides concatenated allele sequences) with third-party software Can be used for strain typing of species other than Listeria monocytogenes ü ü ü Automated curation tools (for assigning allele ID’s) provided for new alleles ü ü û 785 on D ecem ber 3, 2020 by guest http://aem .asm .org/ D ow nloaded from monocytogenes isolates. ..



Similar Products

90
Applied Maths pattern analysis software package bionumerics
Pattern Analysis Software Package Bionumerics, supplied by Applied Maths, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pattern+analysis+software+package+bionumerics/pattern+analysis+software+package+bionumerics/10__1007_slash_s13213___016___1226___2-59-11-18
Average 90 stars, based on 1 article reviews
pattern analysis software package bionumerics - by Bioz Stars, 2026-09
90/100 stars
  Buy from Supplier

90
Applied Maths pattern analysis software package bionumerics version 4.5
Pattern Analysis Software Package Bionumerics Version 4.5, supplied by Applied Maths, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pattern+analysis+software+package+bionumerics/pattern+analysis+software+package+gel+compare+version+4+1/10__1016_slash_j__lwt__2015__03__018-60-6-13
Average 90 stars, based on 1 article reviews
pattern analysis software package bionumerics version 4.5 - by Bioz Stars, 2026-09
90/100 stars
  Buy from Supplier

90
Applied Maths pattern analysis software package bionumerics version 4.6
Pattern Analysis Software Package Bionumerics Version 4.6, supplied by Applied Maths, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pattern+analysis+software+package+bionumerics/pattern+analysis+software+package+gel+compare+version+4+1/pm20193970-67-22-25
Average 90 stars, based on 1 article reviews
pattern analysis software package bionumerics version 4.6 - by Bioz Stars, 2026-09
90/100 stars
  Buy from Supplier

90
Applied Maths banding pattern analysis software package bionumerics 2.5
Banding Pattern Analysis Software Package Bionumerics 2.5, supplied by Applied Maths, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pattern+analysis+software+package+bionumerics/banding+pattern+analysis+software+package+bionumerics+2+5/10__1007_slash_s12161___008___9014___7-63-5-14
Average 90 stars, based on 1 article reviews
banding pattern analysis software package bionumerics 2.5 - by Bioz Stars, 2026-09
90/100 stars
  Buy from Supplier

Image Search Results