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jackson laboratory jax  (Jackson Laboratory)

 
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    Jackson Laboratory jackson laboratory jax
    Jackson Laboratory Jax, supplied by Jackson Laboratory, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/patchmaster+v2%2E73+software/028533+jackson+jax+laboratory/pm35793630-339-83-85
    Average 86 stars, based on 1 article reviews
    jackson laboratory jax - by Bioz Stars, 2026-09
    86/100 stars

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    Flow Cytometry:

    Article Title: Molecular signatures and cellular diversity during mouse habenula development.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER L15 medium Thermo-Fisher Cat#11415049 glutaMAX DMEM/F-12 Thermo-Fisher Cat#10565018 Penicillin-Streptomycin Thermo-Fisher Cat# 15140122 EGF recombinant human protein Thermo-Fisher Cat# PHG0311 FGF-Basic Recombinant Human Protein Thermo-Fisher Cat#PGH0367 HEPES Thermo-Fisher Cat#15630106 Methanol Merck Millipore Cat#1060092500 Hydrogen peroxide Merck Millipore Cat#1072091000 Triton-X-100 Sigma Cat#x100-500ml Thimerosal Gerbu Cat#1031/USP35 Saponin Sigma Cat#S7900 Tetrahydroflurane Sigma Cat#186562-1L Dichloromethane Sigma Cat#270997-1L Dibenzyl ether Sigma Cat#108014-1kg Heparin Sigma Cat#H3393 Formaldehyde Riedel-de Hain Cat#33200 Glutaraldehyde Acros Organics Cat#119989925 Sodium deoxycholate Sigma Cat#D6750-100G K-ferricyanide Merck Cat#231-847-6 K-ferrocyanide Sigma Cat#p8131-100G Magnesium Chloride Merck Cat#A0344733339 DNase Roche Cat#776785 EDTA Sigma Cat#E5134-500G Lithium Chloride Merck Cat#7447-41-8 Triethanolamine Fluka Cat#90279 Acetic anhydride Sigma Cat#A6404 Deionized formamide ICN Cat#800686 Ficoll-400 Sigma Cat#F4375 Polyvinylpyrrolidone Merck Cat#7443 BSA-fraction V ICN Cat#103703 tRNA baker’s yeast Sigma Cat#R-6750 SonifiCated Salmon Sperm DNA Sigma Cat#D-91565 NBT/BCIP Boehringer Mannheim Cat#1681451 Levamisol Sigma Cat#L9756 Corn oil Sigma Cat#C8267-500ML Tamoxifen Sigma Cat#T5648-1G Bromodeoxyuridine Sigma Cat#B5002 Normal Donkey Serum Jackson Immunoresearch Cat#017-000-121 Dextran Alexa Fluor 488 Invitrogen Cat# D22910 Ketamine Narketan 10 Vétoquinol GTIN 03605877551210 Medetomidine Sedastart Ast Farma B.V. N/A Lidocaine B. Braun N/A Atipamezole Alzane Syva N/A Carpofen Carpofelican Dechra N/A Sodium pentobarbital Euthanimal N/A Fluorsave VWR international Cat# 345789-20P DAPI - 40,6-diamidino-2-phenylindole Sigma Cat#D9564 (Continued on next page) Cell Reports 40, 111029, July 5, 2022 e2 .. REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FluoReporter lacZ Flow Cytometry Kit Thermo-Fisher Cat#F1930 PureLink Quick Gel Extraction kit Thermo-Fisher Cat#K210025 pGEM-T-easy vector system Promega Cat#A1360 Deposited data FastQ devHb This paper GEO: GSE188712 Count table devHb This paper GEO: GSE188712 FastQ E18WT This paper GEO: GSE188712 Count table E18WT This paper GEO: GSE188712 Scripts (github) This paper https://doi.org/10.5281/zenodo.6536116 Experimental models: Organisms/strains Mouse: C57BL/6j Charles River Cat#027 IMSR_JAX:000664 Mouse: Brn3a-tauLacZ gift from prof. Eric Turner Seattle Children’s Hospital N/A Mouse: Cart-IRES2-cre-D The Jackson Laboratory JAX:028533 Mouse: STOP-tdTomato The Jackson Laboratory JAX: 007914, RRID:IMSR_JAX:007914 Mouse: Brn3a-mTurquoiseHISFlpOERT2 This study N/A Mouse: Ai65D The Jackson Laboratory JAX: 021875, RRID:IMSR_JAX:021875 Oligonucleotides See Table S5 N/A Software and algorithms Scanpy https://github.com/satijalab/seurat Seurat v3 https://github.com/theislab/scanpy scVELO Bergen et al., 2020 RRID:SCR_018168 https://github.com/theislab/scvelo CellRank Aibar et al., 2017 https://github.com/theislab/cellrank MapAndGo2 STARmap Anna Alemany https://github.com/anna-alemany/ transcriptomics/tree/master/mapandgo Python version 3.7.6 Python Software Foundation RRID:SCR_008394 https://www.python.org/ R version 4.0.3 The R Foundation for Statistical Computing RRID:SCR_001905 https://www.r-project.org/ Louvain vtraag/louvain-igraph: 0.6.1 https://doi.org/10.5281/zenodo.595481 MAST Finak et al., 2015 RRID:SCR_016340 https://github.com/RGLab/MAST MAGMA de Leeuw et al., 2015 https://ctg.cncr.nl/software/magma pySCENIC Aibar et al., 2017 https://github.com/aertslab/pySCENIC Zen 2 (blue edition) Zeiss N/A Imspector software version 5.0285.0 LaVision BioTec N/A Imaris version 8.4-9.4 Bitplane RRID:SCR_007370, https://imaris.oxinst.com/ Fiji version 2.0.0-rc-69/1.52o & version 1.53f51 Fiji RRID:SCR_002285 https://imagej.net/Fiji PatchMaster v2.73 HEKA Elektronik N/A Igor Pro 8.0.4.2 Wavemetrics N/A IBM SPSS Statistics version 27 IBM Corp N/A Graphpad Prism version 9.1.1 GraphPad Software RRID:SCR_002798 https://www.graphpad.com/ e3 Cell Reports 40, 111029, July 5, 2022 ..

    Gel Extraction:

    Article Title: Molecular signatures and cellular diversity during mouse habenula development.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER L15 medium Thermo-Fisher Cat#11415049 glutaMAX DMEM/F-12 Thermo-Fisher Cat#10565018 Penicillin-Streptomycin Thermo-Fisher Cat# 15140122 EGF recombinant human protein Thermo-Fisher Cat# PHG0311 FGF-Basic Recombinant Human Protein Thermo-Fisher Cat#PGH0367 HEPES Thermo-Fisher Cat#15630106 Methanol Merck Millipore Cat#1060092500 Hydrogen peroxide Merck Millipore Cat#1072091000 Triton-X-100 Sigma Cat#x100-500ml Thimerosal Gerbu Cat#1031/USP35 Saponin Sigma Cat#S7900 Tetrahydroflurane Sigma Cat#186562-1L Dichloromethane Sigma Cat#270997-1L Dibenzyl ether Sigma Cat#108014-1kg Heparin Sigma Cat#H3393 Formaldehyde Riedel-de Hain Cat#33200 Glutaraldehyde Acros Organics Cat#119989925 Sodium deoxycholate Sigma Cat#D6750-100G K-ferricyanide Merck Cat#231-847-6 K-ferrocyanide Sigma Cat#p8131-100G Magnesium Chloride Merck Cat#A0344733339 DNase Roche Cat#776785 EDTA Sigma Cat#E5134-500G Lithium Chloride Merck Cat#7447-41-8 Triethanolamine Fluka Cat#90279 Acetic anhydride Sigma Cat#A6404 Deionized formamide ICN Cat#800686 Ficoll-400 Sigma Cat#F4375 Polyvinylpyrrolidone Merck Cat#7443 BSA-fraction V ICN Cat#103703 tRNA baker’s yeast Sigma Cat#R-6750 SonifiCated Salmon Sperm DNA Sigma Cat#D-91565 NBT/BCIP Boehringer Mannheim Cat#1681451 Levamisol Sigma Cat#L9756 Corn oil Sigma Cat#C8267-500ML Tamoxifen Sigma Cat#T5648-1G Bromodeoxyuridine Sigma Cat#B5002 Normal Donkey Serum Jackson Immunoresearch Cat#017-000-121 Dextran Alexa Fluor 488 Invitrogen Cat# D22910 Ketamine Narketan 10 Vétoquinol GTIN 03605877551210 Medetomidine Sedastart Ast Farma B.V. N/A Lidocaine B. Braun N/A Atipamezole Alzane Syva N/A Carpofen Carpofelican Dechra N/A Sodium pentobarbital Euthanimal N/A Fluorsave VWR international Cat# 345789-20P DAPI - 40,6-diamidino-2-phenylindole Sigma Cat#D9564 (Continued on next page) Cell Reports 40, 111029, July 5, 2022 e2 .. REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FluoReporter lacZ Flow Cytometry Kit Thermo-Fisher Cat#F1930 PureLink Quick Gel Extraction kit Thermo-Fisher Cat#K210025 pGEM-T-easy vector system Promega Cat#A1360 Deposited data FastQ devHb This paper GEO: GSE188712 Count table devHb This paper GEO: GSE188712 FastQ E18WT This paper GEO: GSE188712 Count table E18WT This paper GEO: GSE188712 Scripts (github) This paper https://doi.org/10.5281/zenodo.6536116 Experimental models: Organisms/strains Mouse: C57BL/6j Charles River Cat#027 IMSR_JAX:000664 Mouse: Brn3a-tauLacZ gift from prof. Eric Turner Seattle Children’s Hospital N/A Mouse: Cart-IRES2-cre-D The Jackson Laboratory JAX:028533 Mouse: STOP-tdTomato The Jackson Laboratory JAX: 007914, RRID:IMSR_JAX:007914 Mouse: Brn3a-mTurquoiseHISFlpOERT2 This study N/A Mouse: Ai65D The Jackson Laboratory JAX: 021875, RRID:IMSR_JAX:021875 Oligonucleotides See Table S5 N/A Software and algorithms Scanpy https://github.com/satijalab/seurat Seurat v3 https://github.com/theislab/scanpy scVELO Bergen et al., 2020 RRID:SCR_018168 https://github.com/theislab/scvelo CellRank Aibar et al., 2017 https://github.com/theislab/cellrank MapAndGo2 STARmap Anna Alemany https://github.com/anna-alemany/ transcriptomics/tree/master/mapandgo Python version 3.7.6 Python Software Foundation RRID:SCR_008394 https://www.python.org/ R version 4.0.3 The R Foundation for Statistical Computing RRID:SCR_001905 https://www.r-project.org/ Louvain vtraag/louvain-igraph: 0.6.1 https://doi.org/10.5281/zenodo.595481 MAST Finak et al., 2015 RRID:SCR_016340 https://github.com/RGLab/MAST MAGMA de Leeuw et al., 2015 https://ctg.cncr.nl/software/magma pySCENIC Aibar et al., 2017 https://github.com/aertslab/pySCENIC Zen 2 (blue edition) Zeiss N/A Imspector software version 5.0285.0 LaVision BioTec N/A Imaris version 8.4-9.4 Bitplane RRID:SCR_007370, https://imaris.oxinst.com/ Fiji version 2.0.0-rc-69/1.52o & version 1.53f51 Fiji RRID:SCR_002285 https://imagej.net/Fiji PatchMaster v2.73 HEKA Elektronik N/A Igor Pro 8.0.4.2 Wavemetrics N/A IBM SPSS Statistics version 27 IBM Corp N/A Graphpad Prism version 9.1.1 GraphPad Software RRID:SCR_002798 https://www.graphpad.com/ e3 Cell Reports 40, 111029, July 5, 2022 ..

    Software:

    Article Title: Molecular signatures and cellular diversity during mouse habenula development.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER L15 medium Thermo-Fisher Cat#11415049 glutaMAX DMEM/F-12 Thermo-Fisher Cat#10565018 Penicillin-Streptomycin Thermo-Fisher Cat# 15140122 EGF recombinant human protein Thermo-Fisher Cat# PHG0311 FGF-Basic Recombinant Human Protein Thermo-Fisher Cat#PGH0367 HEPES Thermo-Fisher Cat#15630106 Methanol Merck Millipore Cat#1060092500 Hydrogen peroxide Merck Millipore Cat#1072091000 Triton-X-100 Sigma Cat#x100-500ml Thimerosal Gerbu Cat#1031/USP35 Saponin Sigma Cat#S7900 Tetrahydroflurane Sigma Cat#186562-1L Dichloromethane Sigma Cat#270997-1L Dibenzyl ether Sigma Cat#108014-1kg Heparin Sigma Cat#H3393 Formaldehyde Riedel-de Hain Cat#33200 Glutaraldehyde Acros Organics Cat#119989925 Sodium deoxycholate Sigma Cat#D6750-100G K-ferricyanide Merck Cat#231-847-6 K-ferrocyanide Sigma Cat#p8131-100G Magnesium Chloride Merck Cat#A0344733339 DNase Roche Cat#776785 EDTA Sigma Cat#E5134-500G Lithium Chloride Merck Cat#7447-41-8 Triethanolamine Fluka Cat#90279 Acetic anhydride Sigma Cat#A6404 Deionized formamide ICN Cat#800686 Ficoll-400 Sigma Cat#F4375 Polyvinylpyrrolidone Merck Cat#7443 BSA-fraction V ICN Cat#103703 tRNA baker’s yeast Sigma Cat#R-6750 SonifiCated Salmon Sperm DNA Sigma Cat#D-91565 NBT/BCIP Boehringer Mannheim Cat#1681451 Levamisol Sigma Cat#L9756 Corn oil Sigma Cat#C8267-500ML Tamoxifen Sigma Cat#T5648-1G Bromodeoxyuridine Sigma Cat#B5002 Normal Donkey Serum Jackson Immunoresearch Cat#017-000-121 Dextran Alexa Fluor 488 Invitrogen Cat# D22910 Ketamine Narketan 10 Vétoquinol GTIN 03605877551210 Medetomidine Sedastart Ast Farma B.V. N/A Lidocaine B. Braun N/A Atipamezole Alzane Syva N/A Carpofen Carpofelican Dechra N/A Sodium pentobarbital Euthanimal N/A Fluorsave VWR international Cat# 345789-20P DAPI - 40,6-diamidino-2-phenylindole Sigma Cat#D9564 (Continued on next page) Cell Reports 40, 111029, July 5, 2022 e2 .. REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FluoReporter lacZ Flow Cytometry Kit Thermo-Fisher Cat#F1930 PureLink Quick Gel Extraction kit Thermo-Fisher Cat#K210025 pGEM-T-easy vector system Promega Cat#A1360 Deposited data FastQ devHb This paper GEO: GSE188712 Count table devHb This paper GEO: GSE188712 FastQ E18WT This paper GEO: GSE188712 Count table E18WT This paper GEO: GSE188712 Scripts (github) This paper https://doi.org/10.5281/zenodo.6536116 Experimental models: Organisms/strains Mouse: C57BL/6j Charles River Cat#027 IMSR_JAX:000664 Mouse: Brn3a-tauLacZ gift from prof. Eric Turner Seattle Children’s Hospital N/A Mouse: Cart-IRES2-cre-D The Jackson Laboratory JAX:028533 Mouse: STOP-tdTomato The Jackson Laboratory JAX: 007914, RRID:IMSR_JAX:007914 Mouse: Brn3a-mTurquoiseHISFlpOERT2 This study N/A Mouse: Ai65D The Jackson Laboratory JAX: 021875, RRID:IMSR_JAX:021875 Oligonucleotides See Table S5 N/A Software and algorithms Scanpy https://github.com/satijalab/seurat Seurat v3 https://github.com/theislab/scanpy scVELO Bergen et al., 2020 RRID:SCR_018168 https://github.com/theislab/scvelo CellRank Aibar et al., 2017 https://github.com/theislab/cellrank MapAndGo2 STARmap Anna Alemany https://github.com/anna-alemany/ transcriptomics/tree/master/mapandgo Python version 3.7.6 Python Software Foundation RRID:SCR_008394 https://www.python.org/ R version 4.0.3 The R Foundation for Statistical Computing RRID:SCR_001905 https://www.r-project.org/ Louvain vtraag/louvain-igraph: 0.6.1 https://doi.org/10.5281/zenodo.595481 MAST Finak et al., 2015 RRID:SCR_016340 https://github.com/RGLab/MAST MAGMA de Leeuw et al., 2015 https://ctg.cncr.nl/software/magma pySCENIC Aibar et al., 2017 https://github.com/aertslab/pySCENIC Zen 2 (blue edition) Zeiss N/A Imspector software version 5.0285.0 LaVision BioTec N/A Imaris version 8.4-9.4 Bitplane RRID:SCR_007370, https://imaris.oxinst.com/ Fiji version 2.0.0-rc-69/1.52o & version 1.53f51 Fiji RRID:SCR_002285 https://imagej.net/Fiji PatchMaster v2.73 HEKA Elektronik N/A Igor Pro 8.0.4.2 Wavemetrics N/A IBM SPSS Statistics version 27 IBM Corp N/A Graphpad Prism version 9.1.1 GraphPad Software RRID:SCR_002798 https://www.graphpad.com/ e3 Cell Reports 40, 111029, July 5, 2022 ..

    Transcriptomics:

    Article Title: Molecular signatures and cellular diversity during mouse habenula development.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER L15 medium Thermo-Fisher Cat#11415049 glutaMAX DMEM/F-12 Thermo-Fisher Cat#10565018 Penicillin-Streptomycin Thermo-Fisher Cat# 15140122 EGF recombinant human protein Thermo-Fisher Cat# PHG0311 FGF-Basic Recombinant Human Protein Thermo-Fisher Cat#PGH0367 HEPES Thermo-Fisher Cat#15630106 Methanol Merck Millipore Cat#1060092500 Hydrogen peroxide Merck Millipore Cat#1072091000 Triton-X-100 Sigma Cat#x100-500ml Thimerosal Gerbu Cat#1031/USP35 Saponin Sigma Cat#S7900 Tetrahydroflurane Sigma Cat#186562-1L Dichloromethane Sigma Cat#270997-1L Dibenzyl ether Sigma Cat#108014-1kg Heparin Sigma Cat#H3393 Formaldehyde Riedel-de Hain Cat#33200 Glutaraldehyde Acros Organics Cat#119989925 Sodium deoxycholate Sigma Cat#D6750-100G K-ferricyanide Merck Cat#231-847-6 K-ferrocyanide Sigma Cat#p8131-100G Magnesium Chloride Merck Cat#A0344733339 DNase Roche Cat#776785 EDTA Sigma Cat#E5134-500G Lithium Chloride Merck Cat#7447-41-8 Triethanolamine Fluka Cat#90279 Acetic anhydride Sigma Cat#A6404 Deionized formamide ICN Cat#800686 Ficoll-400 Sigma Cat#F4375 Polyvinylpyrrolidone Merck Cat#7443 BSA-fraction V ICN Cat#103703 tRNA baker’s yeast Sigma Cat#R-6750 SonifiCated Salmon Sperm DNA Sigma Cat#D-91565 NBT/BCIP Boehringer Mannheim Cat#1681451 Levamisol Sigma Cat#L9756 Corn oil Sigma Cat#C8267-500ML Tamoxifen Sigma Cat#T5648-1G Bromodeoxyuridine Sigma Cat#B5002 Normal Donkey Serum Jackson Immunoresearch Cat#017-000-121 Dextran Alexa Fluor 488 Invitrogen Cat# D22910 Ketamine Narketan 10 Vétoquinol GTIN 03605877551210 Medetomidine Sedastart Ast Farma B.V. N/A Lidocaine B. Braun N/A Atipamezole Alzane Syva N/A Carpofen Carpofelican Dechra N/A Sodium pentobarbital Euthanimal N/A Fluorsave VWR international Cat# 345789-20P DAPI - 40,6-diamidino-2-phenylindole Sigma Cat#D9564 (Continued on next page) Cell Reports 40, 111029, July 5, 2022 e2 .. REAGENT or RESOURCE SOURCE IDENTIFIER Critical commercial assays FluoReporter lacZ Flow Cytometry Kit Thermo-Fisher Cat#F1930 PureLink Quick Gel Extraction kit Thermo-Fisher Cat#K210025 pGEM-T-easy vector system Promega Cat#A1360 Deposited data FastQ devHb This paper GEO: GSE188712 Count table devHb This paper GEO: GSE188712 FastQ E18WT This paper GEO: GSE188712 Count table E18WT This paper GEO: GSE188712 Scripts (github) This paper https://doi.org/10.5281/zenodo.6536116 Experimental models: Organisms/strains Mouse: C57BL/6j Charles River Cat#027 IMSR_JAX:000664 Mouse: Brn3a-tauLacZ gift from prof. Eric Turner Seattle Children’s Hospital N/A Mouse: Cart-IRES2-cre-D The Jackson Laboratory JAX:028533 Mouse: STOP-tdTomato The Jackson Laboratory JAX: 007914, RRID:IMSR_JAX:007914 Mouse: Brn3a-mTurquoiseHISFlpOERT2 This study N/A Mouse: Ai65D The Jackson Laboratory JAX: 021875, RRID:IMSR_JAX:021875 Oligonucleotides See Table S5 N/A Software and algorithms Scanpy https://github.com/satijalab/seurat Seurat v3 https://github.com/theislab/scanpy scVELO Bergen et al., 2020 RRID:SCR_018168 https://github.com/theislab/scvelo CellRank Aibar et al., 2017 https://github.com/theislab/cellrank MapAndGo2 STARmap Anna Alemany https://github.com/anna-alemany/ transcriptomics/tree/master/mapandgo Python version 3.7.6 Python Software Foundation RRID:SCR_008394 https://www.python.org/ R version 4.0.3 The R Foundation for Statistical Computing RRID:SCR_001905 https://www.r-project.org/ Louvain vtraag/louvain-igraph: 0.6.1 https://doi.org/10.5281/zenodo.595481 MAST Finak et al., 2015 RRID:SCR_016340 https://github.com/RGLab/MAST MAGMA de Leeuw et al., 2015 https://ctg.cncr.nl/software/magma pySCENIC Aibar et al., 2017 https://github.com/aertslab/pySCENIC Zen 2 (blue edition) Zeiss N/A Imspector software version 5.0285.0 LaVision BioTec N/A Imaris version 8.4-9.4 Bitplane RRID:SCR_007370, https://imaris.oxinst.com/ Fiji version 2.0.0-rc-69/1.52o & version 1.53f51 Fiji RRID:SCR_002285 https://imagej.net/Fiji PatchMaster v2.73 HEKA Elektronik N/A Igor Pro 8.0.4.2 Wavemetrics N/A IBM SPSS Statistics version 27 IBM Corp N/A Graphpad Prism version 9.1.1 GraphPad Software RRID:SCR_002798 https://www.graphpad.com/ e3 Cell Reports 40, 111029, July 5, 2022 ..



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