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goat anti p21  (R&D Systems)


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    Structured Review

    R&D Systems goat anti p21
    Figure 1. Identification of senescence-inducing kinase siRNAs. ( A ) Schematic overview of the high-content senescence screen. ( B ) Scatterplot analysis of data from the kinome HCS screen in p53+ cells. Cells were stained for Ki67, p53, <t>p21</t> CIP1 and Hoechst at day 3, and multiparametric analysis was performed to determine siRNAs displaying decreased proliferation (< 0.5 StDev Ki67%) and an increased nuclear size (> 2.0 StDev Hoechst mean area). High, medium and low cell number indicators are assigned as the third parameter. ( C ) Senescence scores per gene are the sum of the senescence scores of its siRNA pool and the four individual siRNAs, omitting siRNAs conferring less than 50% specific gene knockdown. Scoring details are depicted in . References to studies establishing bona fide tumor suppressor functions for human ( Hs ) or mouse ( Mm ) genes are indicated.
    Goat Anti P21, supplied by R&D Systems, used in various techniques. Bioz Stars score: 93/100, based on 13 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/p21/Human+p21%2FCIP1%2FCDKN1A+Antibody/pmc03594263-132-9-11
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    Images

    1) Product Images from "A high-content cellular senescence screen identifies candidate tumor suppressors, including EPHA3"

    Article Title: A high-content cellular senescence screen identifies candidate tumor suppressors, including EPHA3

    Journal: Cell Cycle

    doi: 10.4161/cc.23515

    Figure 1. Identification of senescence-inducing kinase siRNAs. ( A ) Schematic overview of the high-content senescence screen. ( B ) Scatterplot analysis of data from the kinome HCS screen in p53+ cells. Cells were stained for Ki67, p53, p21 CIP1 and Hoechst at day 3, and multiparametric analysis was performed to determine siRNAs displaying decreased proliferation (< 0.5 StDev Ki67%) and an increased nuclear size (> 2.0 StDev Hoechst mean area). High, medium and low cell number indicators are assigned as the third parameter. ( C ) Senescence scores per gene are the sum of the senescence scores of its siRNA pool and the four individual siRNAs, omitting siRNAs conferring less than 50% specific gene knockdown. Scoring details are depicted in . References to studies establishing bona fide tumor suppressor functions for human ( Hs ) or mouse ( Mm ) genes are indicated.
    Figure Legend Snippet: Figure 1. Identification of senescence-inducing kinase siRNAs. ( A ) Schematic overview of the high-content senescence screen. ( B ) Scatterplot analysis of data from the kinome HCS screen in p53+ cells. Cells were stained for Ki67, p53, p21 CIP1 and Hoechst at day 3, and multiparametric analysis was performed to determine siRNAs displaying decreased proliferation (< 0.5 StDev Ki67%) and an increased nuclear size (> 2.0 StDev Hoechst mean area). High, medium and low cell number indicators are assigned as the third parameter. ( C ) Senescence scores per gene are the sum of the senescence scores of its siRNA pool and the four individual siRNAs, omitting siRNAs conferring less than 50% specific gene knockdown. Scoring details are depicted in . References to studies establishing bona fide tumor suppressor functions for human ( Hs ) or mouse ( Mm ) genes are indicated.

    Techniques Used: Staining, Knockdown

    Figure 2. Delineation of senescence signatures. ( A ) hTERT-RPE1 p53 shRNA cells were transfected with kinome siRNAs in the absence of doxycycline and immunostained for p53 and p21 CIP1 following 72 h culture. Percentages of cells expressing p53, p21 CIP1 above threshold levels were calculated, and averages from four 384 wells are shown. ( B ) hTERT-RPE1 p53 shRNA cells were transfected with kinome siRNAs in the absence or presence of doxycycline and immunostained for Ki67. Percentages of cells expressing Ki67 protein above threshold levels were calculated, and averages from four 384 wells are shown. * indicates p ≤ 0,05 and ** indicates p ≤ 0,01. ( C ) Senescence scores per gene are the sum of the senescence scores of the siRNA pool plus four individual siRNAs, omitting siRNAs conferring less than 50% knockdown. Detailed scoring information is depicted in . ( D ) Quantitative p16 INK4A mRNA expression analyses during senescence induction. hTERT-RPE1 p53 shRNA cells were transfected with pooled siRNAs in the absence of doxycycline. RNA expression was quantitated using TaqMan analyses after 3 days of transfection. ( E ) Schematic model summarizing kinome screen data, using data depicted in ( A ) and ( D ). In an incipient tumor, modeled by hTERT-RPE1 cells, loss of selected tumor suppressors activates p53- and/or p16 INK4A -dependent senescence, and overt DNA damage. In a premalignant tumor, senescence may serve as a cell-intrinsic tumor suppressor mechanism to subvert oncogenic transformation. Loss of p16 INK4A and/or p53 promotes malignancy.
    Figure Legend Snippet: Figure 2. Delineation of senescence signatures. ( A ) hTERT-RPE1 p53 shRNA cells were transfected with kinome siRNAs in the absence of doxycycline and immunostained for p53 and p21 CIP1 following 72 h culture. Percentages of cells expressing p53, p21 CIP1 above threshold levels were calculated, and averages from four 384 wells are shown. ( B ) hTERT-RPE1 p53 shRNA cells were transfected with kinome siRNAs in the absence or presence of doxycycline and immunostained for Ki67. Percentages of cells expressing Ki67 protein above threshold levels were calculated, and averages from four 384 wells are shown. * indicates p ≤ 0,05 and ** indicates p ≤ 0,01. ( C ) Senescence scores per gene are the sum of the senescence scores of the siRNA pool plus four individual siRNAs, omitting siRNAs conferring less than 50% knockdown. Detailed scoring information is depicted in . ( D ) Quantitative p16 INK4A mRNA expression analyses during senescence induction. hTERT-RPE1 p53 shRNA cells were transfected with pooled siRNAs in the absence of doxycycline. RNA expression was quantitated using TaqMan analyses after 3 days of transfection. ( E ) Schematic model summarizing kinome screen data, using data depicted in ( A ) and ( D ). In an incipient tumor, modeled by hTERT-RPE1 cells, loss of selected tumor suppressors activates p53- and/or p16 INK4A -dependent senescence, and overt DNA damage. In a premalignant tumor, senescence may serve as a cell-intrinsic tumor suppressor mechanism to subvert oncogenic transformation. Loss of p16 INK4A and/or p53 promotes malignancy.

    Techniques Used: shRNA, Transfection, Expressing, Knockdown, RNA Expression, Transformation Assay

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    Incubation:

    Article Title: Cyclin F drives proliferation through SCF-dependent degradation of the retinoblastoma-like tumor suppressor p130/RBL2
    Article Snippet: .. Sample was incubated with 4i blocking solution (sBS: 100 mM maleimide [Sigma-Aldrich, 129585], 100 mM NH 4 Cl [Sigma-Aldrich, A9434], and 1% bovine serum albumin in PBS) for 1 hr and incubated with primary antibodies diluted as required (anti-phospho-RB [S807/S811] [1:1000, Cell Signaling Technology, 8516]; anti-RB [1:500, Cell Signaling Technology, 9309]; anti-p21 [1:200, R&D Systems, AF1047]; anti-p130 [1:100, Cell Signaling Technology, 13610]; anti-phospho-H2A.X [Ser139] [1:200, Cell Signaling Technology, 80312], anti-phospho-CHK1 [S317] [1:800, Cell Signaling Technology, 12302], anti-53BP1 [1:250, Abcam, ab36823], CDT1 [1:200, Cell Signaling Technology, 8064], CDC6 [1:100, Santa Cruz, sc-9964], HA [1:200, BioLegend, 901501]) in conventional blocking solution (cBS: 1% bovine serum albumin in PBS) overnight at 4°C. .. Samples were rinsed 3× with PBS and then incubated in secondary antibodies (1:500, donkey anti-rabbit AlexaFluor Plus 488 [Thermo Fisher Scientific, A32790], donkey anti-mouse AlexaFluor Plus 555 [Thermo Fisher Scientific, A32773], and donkey anti-goat AlexaFluor Plus 647 [Thermo Fisher Scientific, A32758]) and Hoechst for 1 hr on shaker, then rinsed 5× with PBS and imaged in IB.

    Article Title: Priming with HDAC Inhibitors Sensitizes Ovarian Cancer Cells to Treatment with Cisplatin and HSP90 Inhibitors
    Article Snippet: From 20 to 30 μg of protein were separated by SDS-PAGE (8% polyacrylamide gel for AKT and pAKT, 12% polyacrylamide gel for α-Tubulin and Acetyl-α-Tubulin) and transferred to PVDF membrane (Millipore Corporation, Billerica, MA, USA). .. Blots were incubated with primary antibodies against HSP90 α/β (Cat. No. sc-7947), AKT (Cat. No. sc-8312), phospho AKT (5.Ser 473, Cat. No. sc-293125), β-actin (Cat. No. sc-47778), α-tubulin (Cat. No. sc-8035) (Santa Cruz Biotechnology, Heidelberg, Germany), APAF-1 (Cat. No. MAB868), survivin (Cat. No. AF886) and p21 (AF1047) (Bio-Techne GmbH, Wiesbaden-Nordenstadt, Germany). .. Membranes were incubated with the corresponding HRP-conjugated secondary antibody (R&D Systems Inc, Minneapolis, MN, USA).

    Blocking Assay:

    Article Title: Cyclin F drives proliferation through SCF-dependent degradation of the retinoblastoma-like tumor suppressor p130/RBL2
    Article Snippet: .. Sample was incubated with 4i blocking solution (sBS: 100 mM maleimide [Sigma-Aldrich, 129585], 100 mM NH 4 Cl [Sigma-Aldrich, A9434], and 1% bovine serum albumin in PBS) for 1 hr and incubated with primary antibodies diluted as required (anti-phospho-RB [S807/S811] [1:1000, Cell Signaling Technology, 8516]; anti-RB [1:500, Cell Signaling Technology, 9309]; anti-p21 [1:200, R&D Systems, AF1047]; anti-p130 [1:100, Cell Signaling Technology, 13610]; anti-phospho-H2A.X [Ser139] [1:200, Cell Signaling Technology, 80312], anti-phospho-CHK1 [S317] [1:800, Cell Signaling Technology, 12302], anti-53BP1 [1:250, Abcam, ab36823], CDT1 [1:200, Cell Signaling Technology, 8064], CDC6 [1:100, Santa Cruz, sc-9964], HA [1:200, BioLegend, 901501]) in conventional blocking solution (cBS: 1% bovine serum albumin in PBS) overnight at 4°C. .. Samples were rinsed 3× with PBS and then incubated in secondary antibodies (1:500, donkey anti-rabbit AlexaFluor Plus 488 [Thermo Fisher Scientific, A32790], donkey anti-mouse AlexaFluor Plus 555 [Thermo Fisher Scientific, A32773], and donkey anti-goat AlexaFluor Plus 647 [Thermo Fisher Scientific, A32758]) and Hoechst for 1 hr on shaker, then rinsed 5× with PBS and imaged in IB.

    other:

    Article Title: Senolytic therapy alleviates physiological human brain aging and COVID-19 neuropathology.
    Article Snippet: The following were used: anti-p16 (Cell Signalling, 1:400, no. 80772); anti-p21 (R&D Systems, 1:400, no. AF1047); anti-NeuN (Millipore, 1:1,000, no. ABN78); anti-GFAP (Agilent, 1:2,000, no. Z0334); anti-GFAP (Invitrogen, 1:1,000, no. 13-0300); anti-Sox2 (Cell Signalling, 1:1,000, no. 23064); anti-Sox2 (Cell Signalling, 1:1,000, no. 4900); anti-Sox10 (abcam, 1:500, no. ab229331); anti-Iba1 (Wako, 1:1,000, no. 019-19741); anti-SARS-CoV-2 Nucleocapsid C2, 1:1,000 (ref. 62); anti-SARS-CoV-2 Spike protein, 1:1,000 (ref. 63); anti-γH2AX (Millipore, 1:1,000, no. 05-636); anti-TH (Invitrogen, 1:1,000, no. PA5-85167); anti-lamin B1 (abcam, 1:5,000, no. ab16048); anti-chicken IgG ( Jackson ImmunoResearch, 1:500, no. 703-545-155); anti-rabbit IgG (Invitrogen, 1:400, no. A10042); anti-rabbit IgG (Invitrogen, 1:400, no. A21245); anti-mouse IgG (Invitrogen, 1:400, no. A11029); anti-mouse IgG (Invitrogen, 1:400, no. A21235); and anti-human IgG (Invitrogen, 1:400, no. A21445).

    Immunoprecipitation:

    Article Title: A tissue-bioengineering strategy for modeling rare human kidney diseases in vivo
    Article Snippet: .. Immunoprecipitation experiments were performed using an amine-reactive resin-based method (Pierce, #26149), using antihuman p21 CIP1 (Novus Biologicals, #AF1047, 1:200). .. Immunoblotting was performed using the antibody antihuman pro-Caspase 3 from ThermoFisher Scientific (#31A893, 1:300).



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    93
    Proteintech p21 cdkn1a
    MYO1B correlates with an aging-associated pericyte senescence subcluster (A) NMF consensus cluster heatmaps of pericytes in two datasets. (B) UMAP showing spatial distributions of pericyte clusters 1-3 in dataset 1 and dataset 2. (C) UMAP showing age distribution in the datasets. (D) Sample-proportion plots of clusters across age groups. (E) Heatmap of cluster markers in two datasets. (F) Violin plots of MYO1B expression across pericyte clusters 1-3. (G) Violin plots of MYO1B expression across age groups. (H) Representative H&E, MYO1B IHC, <t>p21</t> IHC and PAI-1 IHC images from young and old skin samples.
    P21 Cdkn1a, supplied by Proteintech, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    ( A ) MCF7-PALR and MCF7-ABER cells were treated with Ctr-ASO-M or SUV-ASO-Ms (0.1 μM). CCK8 assays reveal the cell growth under PAL (0.5 μM) or ABE (0.1 μM) treatment ( N = 3 biological replicates). ( B ) CCK8 assays calculating IC 50 values of SUV-ASO-Ms in MCF7-TAMR, MCF7-PALR, and MCF7-ABER cells ( N = 3 biological replicates). ( C ) Synergy Finder is calculating ZIP scores in MCF7-TAMR to study the synergistic effect between SUV-ASO-Ms and CDK4/6i (PAL and ABE). ( D and E ) MCF7-PALR and MCF7-ABER cells were treated with Ctr-ASO-M or SUV-ASO-Ms (0.1 μM) alone or in combination with CDK4/6i (PAL, 0.5 μM and ABE, 0.1 μM). Flow cytometry analysis (D) and β-Gal activity assays (20× magnification) (E) showing the cell cycle distribution and senescence of the cells. ( F ) Schematic depicting the experimental design of the MCF7-ABER xenograft tumors conducted to assess the efficacy of SUV-ASO2-M or a combination of SUV-ASO2-M with ABE in vivo. ( G to I ) After being treated with Ctr-ASO-M or SUV-ASO2-M in combination with Veh or ABE, the tumor growth curves (G), the harvested tumors (H), and the tumor weight (I) were measured. ( J and K ) RT-qPCR and Western blotting detection of SUV39H2 mRNA (J) and protein (K) in tumors from xenografts. ( L ) IHC staining of p21 in tumors from xenografts. H scores were calculated for p21 in all samples. Data were presented as means ± SD [(A to E), N = 3 biological replicates; (G), (I), (J) to (L), N = 5 biological replicates]. The P values were calculated by one-way ANOVA followed by Tukey’s test for multiple-group comparison.

    Journal: Science Advances

    Article Title: Targeting SUV39H2 exon skipping reverses resistance to CDK4/6 inhibitors via transcriptional activation of p21

    doi: 10.1126/sciadv.aea2001

    Figure Lengend Snippet: ( A ) MCF7-PALR and MCF7-ABER cells were treated with Ctr-ASO-M or SUV-ASO-Ms (0.1 μM). CCK8 assays reveal the cell growth under PAL (0.5 μM) or ABE (0.1 μM) treatment ( N = 3 biological replicates). ( B ) CCK8 assays calculating IC 50 values of SUV-ASO-Ms in MCF7-TAMR, MCF7-PALR, and MCF7-ABER cells ( N = 3 biological replicates). ( C ) Synergy Finder is calculating ZIP scores in MCF7-TAMR to study the synergistic effect between SUV-ASO-Ms and CDK4/6i (PAL and ABE). ( D and E ) MCF7-PALR and MCF7-ABER cells were treated with Ctr-ASO-M or SUV-ASO-Ms (0.1 μM) alone or in combination with CDK4/6i (PAL, 0.5 μM and ABE, 0.1 μM). Flow cytometry analysis (D) and β-Gal activity assays (20× magnification) (E) showing the cell cycle distribution and senescence of the cells. ( F ) Schematic depicting the experimental design of the MCF7-ABER xenograft tumors conducted to assess the efficacy of SUV-ASO2-M or a combination of SUV-ASO2-M with ABE in vivo. ( G to I ) After being treated with Ctr-ASO-M or SUV-ASO2-M in combination with Veh or ABE, the tumor growth curves (G), the harvested tumors (H), and the tumor weight (I) were measured. ( J and K ) RT-qPCR and Western blotting detection of SUV39H2 mRNA (J) and protein (K) in tumors from xenografts. ( L ) IHC staining of p21 in tumors from xenografts. H scores were calculated for p21 in all samples. Data were presented as means ± SD [(A to E), N = 3 biological replicates; (G), (I), (J) to (L), N = 5 biological replicates]. The P values were calculated by one-way ANOVA followed by Tukey’s test for multiple-group comparison.

    Article Snippet: Antibodies against SUV39H2 (11338-1-AP), p21 (10355-1-AP), glyceraldehyde-3-phosphate dehydrogenase (60004-1-Ig), SERPINE1 (13801-1-AP), PLK2 (15956-1-AP), ESRP1 (21045-1-AP), UPF1 (23379-1-AP), anti-mouse (SA00001-1), and anti-rabbit secondary antibodies (SA00001-2) were products from Proteintech.

    Techniques: Flow Cytometry, Analysis, Activity Assay, Xenograft Assay, In Vivo, Quantitative RT-PCR, Western Blot, Immunohistochemistry, Comparison

    ( A ) Average distribution of ATAC-seq signal around promoters (±3 kb from TSS) and enhancers in MCF7-ABER cells treated with Ctr-ASO-M or SUV-ASO2-M (0.1 μM). ( B ) A volcano plot comparing Footprint TF activity between MCF7-ABER cells treated with Ctr-ASO-M or SUV-ASO2-M. ( C ) Footprint TF activity of NFYA between MCF7-ABER cells treated with Ctr-ASO-M or SUV-ASO2-M. ( D ) A volcano plot of DAPs between MCF7-ABER cells treated with Ctr-ASO-M and SUV-ASO2-M. ( E ) Category of DAPs according to their status (open or closed) and location (proximal or distal from TSS) in the genome. ( F ) Overlapping of up-regulated DEGs and open DAPs in MCF7-ABER cells treated with SUV-ASO2-M. The overlapped genes were analyzed using KEGG enrichment. ( G ) A heatmap of the overlapped genes enriched in the p53 pathway, senescence, or both processes. ( H ) IGV visualization of DAPs in p21 , GADD45A , and SERPINE1 of MCF7-ABER cells treated with Ctr-ASO-M or SUV-ASO2-M.

    Journal: Science Advances

    Article Title: Targeting SUV39H2 exon skipping reverses resistance to CDK4/6 inhibitors via transcriptional activation of p21

    doi: 10.1126/sciadv.aea2001

    Figure Lengend Snippet: ( A ) Average distribution of ATAC-seq signal around promoters (±3 kb from TSS) and enhancers in MCF7-ABER cells treated with Ctr-ASO-M or SUV-ASO2-M (0.1 μM). ( B ) A volcano plot comparing Footprint TF activity between MCF7-ABER cells treated with Ctr-ASO-M or SUV-ASO2-M. ( C ) Footprint TF activity of NFYA between MCF7-ABER cells treated with Ctr-ASO-M or SUV-ASO2-M. ( D ) A volcano plot of DAPs between MCF7-ABER cells treated with Ctr-ASO-M and SUV-ASO2-M. ( E ) Category of DAPs according to their status (open or closed) and location (proximal or distal from TSS) in the genome. ( F ) Overlapping of up-regulated DEGs and open DAPs in MCF7-ABER cells treated with SUV-ASO2-M. The overlapped genes were analyzed using KEGG enrichment. ( G ) A heatmap of the overlapped genes enriched in the p53 pathway, senescence, or both processes. ( H ) IGV visualization of DAPs in p21 , GADD45A , and SERPINE1 of MCF7-ABER cells treated with Ctr-ASO-M or SUV-ASO2-M.

    Article Snippet: Antibodies against SUV39H2 (11338-1-AP), p21 (10355-1-AP), glyceraldehyde-3-phosphate dehydrogenase (60004-1-Ig), SERPINE1 (13801-1-AP), PLK2 (15956-1-AP), ESRP1 (21045-1-AP), UPF1 (23379-1-AP), anti-mouse (SA00001-1), and anti-rabbit secondary antibodies (SA00001-2) were products from Proteintech.

    Techniques: Activity Assay

    ( A ) H3K9me3 signals (CUT&Tag) around promoters and enhancers in MCF7-ABER cells treated with Ctr-ASO-M or SUV-ASO2-M (0.1 μM). ( B ) RAD21 signals (ChIP-seq) around enhancers in MCF7 cells ( GSE25021 and GSE72082 datasets). ( C ) RAD21 signals (ChIP-seq) around SUV39H2-dependent and independent H3K9me3 peaks. ( D ) A volcano plot of DEGs between the RAD21 overexpression and the control group (MCF7-ABER). ( E ) GSEA of transcriptome between RAD21 overexpression and the control. ( F and G ) Western blotting (F) and RT-qPCR (G) detection of RAD21 and p21 protein levels, and p21 mRNA levels in MCF7-PALR and MCF7-ABER cells with RAD21 overexpression. ( H ) IGV visualization of H3K9me3, RAD21, STAG1, and SMC1A signals in the p21 promoter ( p21 -Pro) and distal enhancer ( p21 -SE). Blue box: cohesin binding site; gray box: differential H3K9me3 peak. ( I and J ) ChIP-qPCR of H3K9me3 (I) and RAD21 (J) in p21 -Pro and p21 -SE of MCF7-PALR and MCF7-ABER cells treated with Ctr-ASO-M or SUV-ASO2-M (0.1 μM). ( K ) ChIP-qPCR of SUV39H2 in p21 -Pro and p21 -SE of MCF7-PALR and MCF7-ABER cells. ( L ) Western blotting of RAD21, SUV39H2, and p21 protein levels in MCF7-ABER cells transfected with Ctr siRNA or RAD21 siRNA and then treated with Ctr-ASO-M or SUV-ASO2-M (0.1 μM). ( M ) MCF7-ABER cells were transfected with Ctr siRNA or RAD21 siRNA1. CCK8 assays showing cell growth in cells treated with Ctr-ASO-M or SUV-ASO2-M (0.1 μM) in combination with ABE (0.1 μM). ( N ) MCF7-ABER cells were transfected with Ctr siRNA or RAD21 siRNA1. β-Gal activity assays (20× magnification) revealing the senescent cells treated with Ctr-ASO-M or SUV-ASO2-M (0.1 μM). In (F), (G), (I) to (N), data were presented as means ± SD ( N = 3 biological replicates). The P values were calculated using a two-tailed unpaired Student’s t test for two-group comparison and one-way ANOVA followed by Tukey’s test for multiple-group comparisons.

    Journal: Science Advances

    Article Title: Targeting SUV39H2 exon skipping reverses resistance to CDK4/6 inhibitors via transcriptional activation of p21

    doi: 10.1126/sciadv.aea2001

    Figure Lengend Snippet: ( A ) H3K9me3 signals (CUT&Tag) around promoters and enhancers in MCF7-ABER cells treated with Ctr-ASO-M or SUV-ASO2-M (0.1 μM). ( B ) RAD21 signals (ChIP-seq) around enhancers in MCF7 cells ( GSE25021 and GSE72082 datasets). ( C ) RAD21 signals (ChIP-seq) around SUV39H2-dependent and independent H3K9me3 peaks. ( D ) A volcano plot of DEGs between the RAD21 overexpression and the control group (MCF7-ABER). ( E ) GSEA of transcriptome between RAD21 overexpression and the control. ( F and G ) Western blotting (F) and RT-qPCR (G) detection of RAD21 and p21 protein levels, and p21 mRNA levels in MCF7-PALR and MCF7-ABER cells with RAD21 overexpression. ( H ) IGV visualization of H3K9me3, RAD21, STAG1, and SMC1A signals in the p21 promoter ( p21 -Pro) and distal enhancer ( p21 -SE). Blue box: cohesin binding site; gray box: differential H3K9me3 peak. ( I and J ) ChIP-qPCR of H3K9me3 (I) and RAD21 (J) in p21 -Pro and p21 -SE of MCF7-PALR and MCF7-ABER cells treated with Ctr-ASO-M or SUV-ASO2-M (0.1 μM). ( K ) ChIP-qPCR of SUV39H2 in p21 -Pro and p21 -SE of MCF7-PALR and MCF7-ABER cells. ( L ) Western blotting of RAD21, SUV39H2, and p21 protein levels in MCF7-ABER cells transfected with Ctr siRNA or RAD21 siRNA and then treated with Ctr-ASO-M or SUV-ASO2-M (0.1 μM). ( M ) MCF7-ABER cells were transfected with Ctr siRNA or RAD21 siRNA1. CCK8 assays showing cell growth in cells treated with Ctr-ASO-M or SUV-ASO2-M (0.1 μM) in combination with ABE (0.1 μM). ( N ) MCF7-ABER cells were transfected with Ctr siRNA or RAD21 siRNA1. β-Gal activity assays (20× magnification) revealing the senescent cells treated with Ctr-ASO-M or SUV-ASO2-M (0.1 μM). In (F), (G), (I) to (N), data were presented as means ± SD ( N = 3 biological replicates). The P values were calculated using a two-tailed unpaired Student’s t test for two-group comparison and one-way ANOVA followed by Tukey’s test for multiple-group comparisons.

    Article Snippet: Antibodies against SUV39H2 (11338-1-AP), p21 (10355-1-AP), glyceraldehyde-3-phosphate dehydrogenase (60004-1-Ig), SERPINE1 (13801-1-AP), PLK2 (15956-1-AP), ESRP1 (21045-1-AP), UPF1 (23379-1-AP), anti-mouse (SA00001-1), and anti-rabbit secondary antibodies (SA00001-2) were products from Proteintech.

    Techniques: ChIP-sequencing, Over Expression, Control, Western Blot, Quantitative RT-PCR, Binding Assay, ChIP-qPCR, Transfection, Activity Assay, Two Tailed Test, Comparison

    ( A ) Volcano plots of the differentially expressed RBPs between EndoR and EndoR/PalR cells established from MCF7 and T47D cells ( GSE150997 ). ( B ) Overlapping of down-regulated RBPs between EndoR and EndoR/PalR cells established from MCF7 and T47D cells ( GSE150997 ). ( C ) Western blotting detection of ESRP1 and SUV39H2 protein levels in MCF7 and T47D cells transfected with Ctr siRNA or ESRP1 siRNA. ( D ) Western blotting detection of ESRP1 protein levels in MCF7-TAMR, MCF7-PALR, and MCF7-ABER cells. ( E and F ) RT-qPCR detection of SUV39H2 mRNA levels (E) and RT-PCR detection of SUV39H2 exon 2 (F) in MCF7 and T47D cells transfected with Ctr siRNA or ESRP1 siRNA. ( G ) Conservation analysis of the putative ESRP1-binding site in SUV39H2 exon 2. ( H ) Minigene assays of MCF7-ABER cells transfected with Ctr siRNA or ESRP1 siRNA in combination with pSPL3-SUV-W or pSPL3-SUV-M. RT-PCR was performed to detect SUV39H2 exon 2 in each group. ( I ) RIP-qPCR detection of ESRP1 binding to SUV39H2 mRNA in MCF7 and T47D cells. ( J ) Model illustrating the antitumor function of SUV-ASO2-M in CDK4/6i-resistant breast cancer cells. Free-uptake of SUV-ASO2-M promotes RNase H–dependent degradation of SUV39H2 RNA and skipping of SUV39H2 exon 2, resulting in decreased SUV39H2 protein expression in CDK4/6i-resistant breast cancer cells. Consequently, the H3K9me3 mark near the p21 distal enhancer is removed, followed by binding of the cohesin complex and interaction between the distal enhancer and the promoter of p21 . Next, the chromatin accessibility of the p21 promoter is increased to drive transcriptional activation of p21 . In (C) to (F) and (H) to (I), data were presented as means ± SD ( N = 3 biological replicates). The P values were calculated by a two-tailed unpaired Student’s t test for two-group comparison and one-way ANOVA followed by Tukey’s test for multiple-group comparisons.

    Journal: Science Advances

    Article Title: Targeting SUV39H2 exon skipping reverses resistance to CDK4/6 inhibitors via transcriptional activation of p21

    doi: 10.1126/sciadv.aea2001

    Figure Lengend Snippet: ( A ) Volcano plots of the differentially expressed RBPs between EndoR and EndoR/PalR cells established from MCF7 and T47D cells ( GSE150997 ). ( B ) Overlapping of down-regulated RBPs between EndoR and EndoR/PalR cells established from MCF7 and T47D cells ( GSE150997 ). ( C ) Western blotting detection of ESRP1 and SUV39H2 protein levels in MCF7 and T47D cells transfected with Ctr siRNA or ESRP1 siRNA. ( D ) Western blotting detection of ESRP1 protein levels in MCF7-TAMR, MCF7-PALR, and MCF7-ABER cells. ( E and F ) RT-qPCR detection of SUV39H2 mRNA levels (E) and RT-PCR detection of SUV39H2 exon 2 (F) in MCF7 and T47D cells transfected with Ctr siRNA or ESRP1 siRNA. ( G ) Conservation analysis of the putative ESRP1-binding site in SUV39H2 exon 2. ( H ) Minigene assays of MCF7-ABER cells transfected with Ctr siRNA or ESRP1 siRNA in combination with pSPL3-SUV-W or pSPL3-SUV-M. RT-PCR was performed to detect SUV39H2 exon 2 in each group. ( I ) RIP-qPCR detection of ESRP1 binding to SUV39H2 mRNA in MCF7 and T47D cells. ( J ) Model illustrating the antitumor function of SUV-ASO2-M in CDK4/6i-resistant breast cancer cells. Free-uptake of SUV-ASO2-M promotes RNase H–dependent degradation of SUV39H2 RNA and skipping of SUV39H2 exon 2, resulting in decreased SUV39H2 protein expression in CDK4/6i-resistant breast cancer cells. Consequently, the H3K9me3 mark near the p21 distal enhancer is removed, followed by binding of the cohesin complex and interaction between the distal enhancer and the promoter of p21 . Next, the chromatin accessibility of the p21 promoter is increased to drive transcriptional activation of p21 . In (C) to (F) and (H) to (I), data were presented as means ± SD ( N = 3 biological replicates). The P values were calculated by a two-tailed unpaired Student’s t test for two-group comparison and one-way ANOVA followed by Tukey’s test for multiple-group comparisons.

    Article Snippet: Antibodies against SUV39H2 (11338-1-AP), p21 (10355-1-AP), glyceraldehyde-3-phosphate dehydrogenase (60004-1-Ig), SERPINE1 (13801-1-AP), PLK2 (15956-1-AP), ESRP1 (21045-1-AP), UPF1 (23379-1-AP), anti-mouse (SA00001-1), and anti-rabbit secondary antibodies (SA00001-2) were products from Proteintech.

    Techniques: Western Blot, Transfection, Quantitative RT-PCR, Reverse Transcription Polymerase Chain Reaction, Analysis, Binding Assay, Expressing, Activation Assay, Two Tailed Test, Comparison

    The information on the antibody.

    Journal: Aging Cell

    Article Title: Ghrelin Alleviates Aging‐Related Cognitive Impairment by Regulating Autophagy‐Related Signaling via the SHBG / JNK1 /Beclin1 Axis in Microglia

    doi: 10.1111/acel.70732

    Figure Lengend Snippet: The information on the antibody.

    Article Snippet: p21 , 1:2000 , 10355‐1‐AP , Rabbit , Proteintech , USA.

    Techniques:

    Neutrophils from aged mice display enhanced inflammatory and effector‐associated programs. (A) t‐SNE plot of the integrated neutrophil atlas from multiple organs, including blood, intestine, liver, lung, vascular tissue, heart, kidney, and brain, colored by age group. The number of neutrophils contributed by each group is shown in the accompanying bar plot. (B) Volcano plot showing differential gene expression in neutrophils from aged versus young mice. Genes with adjusted p value < 0.05 and log2 Fold Change > 0.5 were designated as differentially expressed genes. (C, D) Hallmark functional enrichment analysis of gene sets enriched in neutrophils from aged (C) or young (D) samples. Dot size represents gene count and color indicates adjusted significance. (E) Sample‐level comparison of marrow proximity and reactive oxygen species (ROS) module scores in neutrophils from young and aged mice. Each dot represents one biological sample. (F) Representative Cytox Green staining images showing NET formation in neutrophils isolated from young and aged mice. Quantification of NET‐positive cells is shown on the right, each data point represents one biological replicate. Scale bar, 50 μm. (G) Representative senescence‐associated β‐galactosidase (β‐Gal) staining images of MOVAS and AML‐12 cells following treatment with conditional medium derived from young or aged neutrophils. Quantification of β‐Gal‐positive cells is shown on the right, each data point represents one biological replicate. Scale bar, 20 μm. (H, I) Immunoblot (H) and its quantification analysis (I) of MMP12, MMP9, P16, and P21 expression in MOVAS and AML‐12 cells treated with conditioned medium from young or aged neutrophils. GAPDH served as a loading control. Relative protein intensities normalized to young group are indicated below each blot. Each plot represents an independent biological replicate. (J) Relative RNA expression of senescence‐associated secretory phenotype (SASP) genes ( Il6 , Tnf , and Ifn ) and extracellular matrix remodeling genes ( Mmp3 and Mmp9 ) in MOVAS cells following treatment with conditioned medium from young or aged neutrophils. Data are presented as mean ± s.e.m. Statistical significance was determined using two‐sided unpaired t ‐test (E–G, I) and two‐way ANOVA followed by Tukey's multiple‐comparisons test (J). * p < 0.05 ; ** p < 0.01; *** p < 0.001.

    Journal: Aging Cell

    Article Title: Single‐Cell Mapping Identifies Aging‐Associated Neutrophil Remodeling Across Multiple Organs

    doi: 10.1111/acel.70735

    Figure Lengend Snippet: Neutrophils from aged mice display enhanced inflammatory and effector‐associated programs. (A) t‐SNE plot of the integrated neutrophil atlas from multiple organs, including blood, intestine, liver, lung, vascular tissue, heart, kidney, and brain, colored by age group. The number of neutrophils contributed by each group is shown in the accompanying bar plot. (B) Volcano plot showing differential gene expression in neutrophils from aged versus young mice. Genes with adjusted p value < 0.05 and log2 Fold Change > 0.5 were designated as differentially expressed genes. (C, D) Hallmark functional enrichment analysis of gene sets enriched in neutrophils from aged (C) or young (D) samples. Dot size represents gene count and color indicates adjusted significance. (E) Sample‐level comparison of marrow proximity and reactive oxygen species (ROS) module scores in neutrophils from young and aged mice. Each dot represents one biological sample. (F) Representative Cytox Green staining images showing NET formation in neutrophils isolated from young and aged mice. Quantification of NET‐positive cells is shown on the right, each data point represents one biological replicate. Scale bar, 50 μm. (G) Representative senescence‐associated β‐galactosidase (β‐Gal) staining images of MOVAS and AML‐12 cells following treatment with conditional medium derived from young or aged neutrophils. Quantification of β‐Gal‐positive cells is shown on the right, each data point represents one biological replicate. Scale bar, 20 μm. (H, I) Immunoblot (H) and its quantification analysis (I) of MMP12, MMP9, P16, and P21 expression in MOVAS and AML‐12 cells treated with conditioned medium from young or aged neutrophils. GAPDH served as a loading control. Relative protein intensities normalized to young group are indicated below each blot. Each plot represents an independent biological replicate. (J) Relative RNA expression of senescence‐associated secretory phenotype (SASP) genes ( Il6 , Tnf , and Ifn ) and extracellular matrix remodeling genes ( Mmp3 and Mmp9 ) in MOVAS cells following treatment with conditioned medium from young or aged neutrophils. Data are presented as mean ± s.e.m. Statistical significance was determined using two‐sided unpaired t ‐test (E–G, I) and two‐way ANOVA followed by Tukey's multiple‐comparisons test (J). * p < 0.05 ; ** p < 0.01; *** p < 0.001.

    Article Snippet: MMP2, MMP9, MMP12, P16, and GAPDH were purchased from Proteintech; P53 was purchased from Affinity; P21 was from Santa Cruz.

    Techniques: Tissue, Gene Expression, Functional Assay, Analysis, Comparison, Staining, Isolation, Derivative Assay, Western Blot, Expressing, Control, RNA Expression

    MYO1B correlates with an aging-associated pericyte senescence subcluster (A) NMF consensus cluster heatmaps of pericytes in two datasets. (B) UMAP showing spatial distributions of pericyte clusters 1-3 in dataset 1 and dataset 2. (C) UMAP showing age distribution in the datasets. (D) Sample-proportion plots of clusters across age groups. (E) Heatmap of cluster markers in two datasets. (F) Violin plots of MYO1B expression across pericyte clusters 1-3. (G) Violin plots of MYO1B expression across age groups. (H) Representative H&E, MYO1B IHC, p21 IHC and PAI-1 IHC images from young and old skin samples.

    Journal: Frontiers in Cell and Developmental Biology

    Article Title: Multimodal profiling uncovers an aging-associated ETS1-MYO1B vascular niche responsive to ipragliflozin

    doi: 10.3389/fcell.2026.1968248

    Figure Lengend Snippet: MYO1B correlates with an aging-associated pericyte senescence subcluster (A) NMF consensus cluster heatmaps of pericytes in two datasets. (B) UMAP showing spatial distributions of pericyte clusters 1-3 in dataset 1 and dataset 2. (C) UMAP showing age distribution in the datasets. (D) Sample-proportion plots of clusters across age groups. (E) Heatmap of cluster markers in two datasets. (F) Violin plots of MYO1B expression across pericyte clusters 1-3. (G) Violin plots of MYO1B expression across age groups. (H) Representative H&E, MYO1B IHC, p21 IHC and PAI-1 IHC images from young and old skin samples.

    Article Snippet: The antibody information was listed as followed MYO1B (Proteintech, 15012-1-AP), p21/CDKN1A (Proteintech, 10355-1-AP), PAI-1/SERPINE1 (Proteintech, 66261-1-Ig), PDGFRB antibody (Proteintech, 13449-1-AP) and ETS1 (Proteintech, 12118-1-AP).

    Techniques: Expressing