optical mapping methods (BioNano Genomics)

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BioNano Genomics optical mapping methods
Optical Mapping Methods, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/optical+mapping+method/optical+mapping/pmc05850084-133-2-6
Average 90 stars, based on 1 article reviews

optical mapping methods - by Bioz Stars, 2026-09

90/100 stars

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Article Title: Genomic and Molecular Mechanisms of Goat Environmental Adaptation.
Article Snippet: In 2017, a high-quality goat genome assembly was achieved, primarily using PacBio sequencing data, in combination with optical mapping (BioNano (San Diego, CA, USA)) and Hi-C technologies for scaffolding.

Article Title: The impact of telomere-to-telomere genome assembly in the plant pan-genomics era
Article Snippet: These sequences were subsequently expanded to chromosome levels by the development of scaffolding technologies, including optical mapping (Bionano Genomics, San Diego, CA, USA) and Hi-C ( Dudchenko et al. 2017 ).

Generated:

Article Title: The impact of telomere-to-telomere genome assembly in the plant pan-genomics era
Article Snippet: .. Optical maps generated using optical mapping technologies, such as Bionano (Bionano Genomics), provide information on the physical location and relative separation of labeling sites and have been used to improve contiguity and validate the genome assembly ( Yuan et al. 2020 ). ..

Labeling:

Sequencing:

Article Title: Chromosome-level genome assembly and annotation of Petunia hybrida
Article Snippet: .. Here we achieve a chromosome-level assembly for P. hybrida using a combination of short-read and long-read sequencing, optical mapping (Bionano) and Hi-C technologies. ..

Hi-C:

Scaffolding:

Article Title: Solanum pan-genetics reveals paralogues as contingencies in crop engineering.
Article Snippet: Nchart was generated with ggplot2 (https:// ggplot2.tidyverse.org/) using adaptation of N-chart (https://github. com/MariaNattestad/Nchart). .. Optical mapping (Bionano Genomics) was performed for 17 samples to facilitate scaffolding. .. Scaffolding with optical maps was performed using the Bionano solve Hybrid Scaffold pipeline with the recommended default parameters (https://bionano.com/software-downloads/).

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