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BioNano Genomics saphyr optical map data
Saphyr Optical Map Data, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/optical+mapping+data/optical+mapping+saphyr+platform/pm40033060-497-4-3
Average 90 stars, based on 1 article reviews
saphyr optical map data - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Hi-C:

Article Title: The genomic landscape of gene-level structural variations in Japanese and global soybean Glycine max cultivars.
Article Snippet: The amounts of Illumina sequencing data used for error correction were total 310.4 Gb for the 11 genomes. .. The amounts of Bionano Saphyr optical map data or Proximo Hi-C data were total 2,502 Gb and 59.1 Gb, respectively. ..

Optical Imaging:

Article Title: The α-globin super-enhancer acts in an orientation-dependent manner
Article Snippet: - Sequencing: Sanger Sequencing (ABI-3730 DNA analyser), Illumina Miseq, and NextSeq Platforms using the NextSeq System Suite (v2) - FACS: Attune NxT software (v3.0) - RT-qPCR: StepONEPlus Real-Time PCR system - RNA (prior to any expression analysis) and DNA quality (prior to ATAC, ChIP, NG Capture C library preparations) assessment using TapeStation machine and software (Agilent). .. - Bionano Genomics Saphyr system for long DNA optical imaging (cytogenetics); used to insure the INVEN genotype is normal apart from the engineered inversion. ..

Article Title: The α-globin super-enhancer acts in an orientation-dependent manner
Article Snippet: Sequencing: Sanger Sequencing (ABI-3730 DNA analyser), Illumina Miseq, and NextSeq Platforms using the NextSeq System Suite (v2) FACS: Attune NxT software (v3.0) RT-qPCR: StepONEPlus Real-Time PCR system RNA (prior to any expression analysis) and DNA quality (prior to ATAC, ChIP, NG Capture C library preparations) assessment using TapeStation machine and software (Agilent). .. Bionano Genomics Saphyr system for long DNA optical imaging (cytogenetics); used to insure the INVEN genotype is normal apart from the engineered inversion. ..

Produced:

Article Title: Genome assembly of a diversity panel of Chenopodium quinoa.
Article Snippet: .. The assemblies were produced from a combination of PacBio HiFi reads and Bionano Saphyr optical maps, with total assembly sizes averaging 1.28 Gb with a mean N50 of 71.1 Mb. ..

Labeling:

Article Title: Structural variant allelic heterogeneity in MECP2 duplication syndrome provides insight into clinical severity and variability of disease expression.
Article Snippet: .. A total of 0.75 μg of UHMW DNA was then labeled by DLE-1 using the Bionano Prep direct label and stain (DLS) method (Bionano Genomics) and loaded onto a flow cell to run on the Saphyr optical mapping system (Bionano Genomics). ..

Staining:

Article Title: Structural variant allelic heterogeneity in MECP2 duplication syndrome provides insight into clinical severity and variability of disease expression.
Article Snippet: .. A total of 0.75 μg of UHMW DNA was then labeled by DLE-1 using the Bionano Prep direct label and stain (DLS) method (Bionano Genomics) and loaded onto a flow cell to run on the Saphyr optical mapping system (Bionano Genomics). ..



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