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oncoscan array data (oschp les  (Thermo Fisher)


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    Thermo Fisher oncoscan array data (oschp les
    Oncoscan Array Data (Oschp Les, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/oncoscan+array/ppr0926610-113-18-33
    Average 90 stars, based on 1 article reviews
    oncoscan array data (oschp les - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Microarray:

    Article Title: Spatial transcriptomics reveals segregation of tumor cell states in glioblastoma and marked immunosuppression within the perinecrotic niche
    Article Snippet: .. Chromosomal microarray analysis was performed using the ThermoFisher Oncoscan array. .. DNA was isolated from fresh frozen tissue from each case using the Qiagen DNeasy Blood and Tissue Kit (Catalog Number 65904).

    Article Title: BRCA2 germline mutation carrier with five malignancies: a case study
    Article Snippet: The arrays were stained at the GeneChip Fluidics Station (Thermo Fisher Scienti c) and scanned via a Gene Chip scanner (Thermo Fisher Scienti c, Waltham, Massachusetts, United States). .. CEL les (Affymetrix DNA microarray image analysis software output) generated from the scanned array image were converted to Oncoscan array data (OSCHP les) and analysed via Chromosome Analysis Suite (ChAS) software (version 4.0; Thermo Fisher) with reference Page 9/14 les NetAffxGenomicAnnotations.Homo_sapiens, hg19; NA33.r1. ..

    Article Title: Ninth International Symposium on Hereditary Breast and Ovarian Cancer : May 2-5, 2023 - Centre Mont-Royal, Montréal, Québec, Canada.
    Article Snippet: Ninth International Symposium on Hereditary Breast and Ovarian Cancer May 2–5, 2023 – Centre Mont-Royal, Montréal, Québec, Canada Springer Nature B.V. 2023 Presented by Hereditary Breast and Ovarian Cancer Foundation in collaboration with Program in Cancer Genetics, McGill University

    Software:

    Article Title: BRCA2 germline mutation carrier with five malignancies: a case study
    Article Snippet: The arrays were stained at the GeneChip Fluidics Station (Thermo Fisher Scienti c) and scanned via a Gene Chip scanner (Thermo Fisher Scienti c, Waltham, Massachusetts, United States). .. CEL les (Affymetrix DNA microarray image analysis software output) generated from the scanned array image were converted to Oncoscan array data (OSCHP les) and analysed via Chromosome Analysis Suite (ChAS) software (version 4.0; Thermo Fisher) with reference Page 9/14 les NetAffxGenomicAnnotations.Homo_sapiens, hg19; NA33.r1. ..

    Generated:

    Article Title: BRCA2 germline mutation carrier with five malignancies: a case study
    Article Snippet: The arrays were stained at the GeneChip Fluidics Station (Thermo Fisher Scienti c) and scanned via a Gene Chip scanner (Thermo Fisher Scienti c, Waltham, Massachusetts, United States). .. CEL les (Affymetrix DNA microarray image analysis software output) generated from the scanned array image were converted to Oncoscan array data (OSCHP les) and analysed via Chromosome Analysis Suite (ChAS) software (version 4.0; Thermo Fisher) with reference Page 9/14 les NetAffxGenomicAnnotations.Homo_sapiens, hg19; NA33.r1. ..

    Genome Wide:

    Article Title: Copy Number Variation in Inflammatory Breast Cancer.
    Article Snippet: RNA was amplified using the Sensation kit and profiled using the Affymetrix Human Transcriptome Array 2.0. .. DNA was profiled for genome-wide copy number variation (CNV) using the Affymetrix OncoScan Array and analyzed using the Nexus Chromosome Analysis Suite. ..



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    Image Search Results


    OSCHP plots by Affymetrix OncoScan for whole‐genome CNA. (A) Genomic copy number gain and loss for chromosomes 1 to 22 and X were obtained in nine cases, with LM‐BN regions presented above and LMS regions below. Arrows indicate CNA shared by LM‐BN and LMS, indicating clonality. (Case 1 LM‐BN was tetraploid. A circular dot in case 2 indicates STUMP component.) (B, C) Dot plots represented the number of detectable sites of (B) CNA gain and (C) loss in genomic regions from nine cases. (D) Dot plots for LOH in LM‐BN and LMS. (E, F) Fraction of genome alteration in LMS and LM‐BN regions (E) individually and (F) combined analysis of fraction of genome alteration in LMS and LM‐BN. * p <0.05; ** p <0.01; *** p < 0.001; ns = no statistical significance.

    Journal: The Journal of Pathology

    Article Title: Genomic characterization and histologic analysis of uterine leiomyosarcoma arising from leiomyoma with bizarre nuclei

    doi: 10.1002/path.6379

    Figure Lengend Snippet: OSCHP plots by Affymetrix OncoScan for whole‐genome CNA. (A) Genomic copy number gain and loss for chromosomes 1 to 22 and X were obtained in nine cases, with LM‐BN regions presented above and LMS regions below. Arrows indicate CNA shared by LM‐BN and LMS, indicating clonality. (Case 1 LM‐BN was tetraploid. A circular dot in case 2 indicates STUMP component.) (B, C) Dot plots represented the number of detectable sites of (B) CNA gain and (C) loss in genomic regions from nine cases. (D) Dot plots for LOH in LM‐BN and LMS. (E, F) Fraction of genome alteration in LMS and LM‐BN regions (E) individually and (F) combined analysis of fraction of genome alteration in LMS and LM‐BN. * p <0.05; ** p <0.01; *** p < 0.001; ns = no statistical significance.

    Article Snippet: DNA was analyzed using Affymetrix OncoScan CNA arrays (Thermo Fisher Scientific, Santa Clara, CA, USA).

    Techniques: