e coli o157 h7 sakai (ATCC)
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E Coli O157 H7 Sakai, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 999 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 96 stars, based on 999 article reviews
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1) Product Images from "Salmonella enterica and Escherichia coli in Wheat Flour: Detection and Serotyping by a Quasimetagenomic Approach Assisted by Magnetic Capture, Multiple-Displacement Amplification, and Real-Time Sequencing"
Article Title: Salmonella enterica and Escherichia coli in Wheat Flour: Detection and Serotyping by a Quasimetagenomic Approach Assisted by Magnetic Capture, Multiple-Displacement Amplification, and Real-Time Sequencing
Journal: Applied and Environmental Microbiology
doi: 10.1128/AEM.00097-20
Figure Legend Snippet: Comparison of different broth media for short-term enrichment of Escherichia coli and Salmonella at 42°C a
Techniques Used: Comparison
Figure Legend Snippet: The capture efficiency (CE) of immunomagnetic (IMS) beads for individual pure culture suspensions of Escherichia coli, Salmonella, and nontarget bacterial strains. CE was determined by dividing the viable count recovered after plating IMS beads by the initial count mixed with the beads.
Techniques Used:
Figure Legend Snippet: Taxonomic classification tree identification of Escherichia coli (A) and Salmonella (B), individually inoculated to wheat flour at a minimum abundance cut-off ratio of 3% generated by EPI2ME after 1 h of sequencing in a nanopore sequencer. Flour samples were inoculated with 0.1 log CFU/g E. coli O157:H7 or Salmonella Typhimurium strains, enriched in tryptic soy broth at 42°C, and subjected to immunomagnetic separation and multiple displacement amplification before sequencing.
Techniques Used: Generated, Sequencing, Immunomagnetic Separation, Multiple Displacement Amplification
Figure Legend Snippet: Phylogenetic tree of wheat flour samples coinoculated with Escherichia coli and Salmonella with 0.1 CFU/g of each organism at a minimum abundance cut-off rate of 0.5% generated by EPI2ME after 1 h of sequencing in a nanopore sequencer. Flour samples were inoculated with 0.1 log CFU/g E. coli O157:H7 and Salmonella Typhimurium strains, enriched in tryptic soy broth at 42°C, and subjected to immunomagnetic separation and multiple displacement amplification before sequencing.
Techniques Used: Generated, Sequencing, Immunomagnetic Separation, Multiple Displacement Amplification
Figure Legend Snippet: Phylogenetic clustering of inoculated flour samples inoculated at 0.1 log CFU/g, subjected to nanopore sequencing on a MinIon device in a quasimetagenomic approach. (A) Phylogenetic tree of Salmonella Typhimurium (ATCC 14028) and its tight clustering with the reference strain obtained from a 1-h sequencing run of Salmonella individual inoculation, subjected to analysis. (B) Phylogenetic tree of E. coli O157:H7 (ATCC 43895) and its tight clustering with the reference strain obtained from a 1-h sequencing run of E. coli and Salmonella dual inoculation, subjected to analysis. Numbers correspond to the closest GenBank strains for reference. Additional data are in Table S1 in the supplemental material.
Techniques Used: Nanopore Sequencing, Sequencing
Figure Legend Snippet: Microbial abundance at the genus level for two different flour samples inoculated at 0.1 CFU/g with E. coli and Salmonella, respectively, resulting from nanopore sequencing using a Minion device followed by a conventional bioinformatics analysis pipeline. Additional data are in Table S2 in the supplemental material.
Techniques Used: Nanopore Sequencing
Figure Legend Snippet: Metagenomics analysis at different sequencing run times using conventional bioinformatics pipeline h
Techniques Used: Sequencing
Figure Legend Snippet: Metagenomics analysis at different sequencing run times using conventional bioinformatics pipeline h
Techniques Used: Sequencing
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