multiple sequence alignment and single nucleotide polymorphisms (snps) analysis  (DNASTAR)

Journal: Data in Brief

Article Title: Data on selected antimalarial drug resistance markers in Zambia

doi: 10.1016/j.dib.2020.106650

Figure Lengend Snippet: Nucleotide sequence for PfKelch 13 and deduced amino acid sequences, showing the three samples that had mutations.

Article Snippet: Multiple nucleotide sequence alignments were analysed by MacVector (Cambridge, UK) using the 3D7 PfK13 sequence (GenBank accession no. XM001350122) as a reference to detect point mutations in the gene.

Techniques: Sequencing

Journal: Insects

Article Title: New Light on Historical Specimens Reveals a New Species of Ladybird (Coleoptera: Coccinellidae): Morphological, Museomic, and Phylogenetic Analyses

doi: 10.3390/insects11110766

Figure Lengend Snippet: Nucleotide composition of the Eriopis patagonia mitogenome. Protein-coding genes (PCGs), transfer RNAs (tRNAs), and ribosomal RNAs (rRNAs).

Article Snippet: The nucleotide multiple sequence alignment used for the phylogenetic analyses are available in Mendely Dataset (Mendeley Data, V1, doi:10.17632/fn8gh9kcpc.1).

Techniques:

Journal: Insects

Article Title: New Light on Historical Specimens Reveals a New Species of Ladybird (Coleoptera: Coccinellidae): Morphological, Museomic, and Phylogenetic Analyses

doi: 10.3390/insects11110766

Figure Lengend Snippet: Nucleotide composition of the Eriopis patagonia mitogenome. Protein-coding genes (PCGs), transfer RNAs (tRNAs), and ribosomal RNAs (rRNAs).

Article Snippet: The nucleotide multiple sequence alignment used for the phylogenetic analyses are available in Mendely Dataset (Mendeley Data, V1, doi:10.17632/fn8gh9kcpc.1).

Techniques:

Journal: Genes

Article Title: EcoTILLING Reveals Natural Allelic Variations in Starch Synthesis Key Gene TaSSIV and Its Haplotypes Associated with Higher Thousand Grain Weight

doi: 10.3390/genes10040307

Figure Lengend Snippet: List of nucleotide polymorphism in TaSSIV with their effects on codons and variation in amino acid.

Article Snippet: Multiple alignment of nucleotide sequences was conducted by Bioedit 7.0.

Techniques: Mutagenesis

Journal: Genes

Article Title: EcoTILLING Reveals Natural Allelic Variations in Starch Synthesis Key Gene TaSSIV and Its Haplotypes Associated with Higher Thousand Grain Weight

doi: 10.3390/genes10040307

Figure Lengend Snippet: Location of single nucleotide polymorphisms (SNPs) in TaSSIV-A , TaSSIV-B and TaSSIV-D .

Article Snippet: Multiple alignment of nucleotide sequences was conducted by Bioedit 7.0.

Techniques:

Journal: Genes

Article Title: EcoTILLING Reveals Natural Allelic Variations in Starch Synthesis Key Gene TaSSIV and Its Haplotypes Associated with Higher Thousand Grain Weight

doi: 10.3390/genes10040307

Figure Lengend Snippet: Nucleotide polymorphisms and functional marker development of TaSSIV-A and TaSSIV-B .

Article Snippet: Multiple alignment of nucleotide sequences was conducted by Bioedit 7.0.

Techniques: Functional Assay, Marker