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normal tissue expression data  (Human Protein Atlas)

 
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    Human Protein Atlas normal tissue expression data
    The <t>expression</t> of GDF6 in various human <t>normal</t> <t>tissues</t> and tumor tissues. ( A ) The mRNA expression of GDF6 in normal human tissues. ( B ) GDF6 expression in tumors and healthy tissues (TCGA database). Tumor types with significantly downregulated GDF6 expression ( C ) and those with significantly upregulated expression ( D ) in the TCGA + GTEx databases. * p < 0.05; ** p < 0.01; *** p < 0.001; **** p < 0.0001.
    Normal Tissue Expression Data, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/normal+tissue+expression+data/normal+tissue+data/pmc12025365-30-0-8
    Average 90 stars, based on 1 article reviews
    normal tissue expression data - by Bioz Stars, 2026-10
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    Images

    1) Product Images from "Dual-Faced Role of GDF6 in Cancer: Mechanistic Insights into Its Context-Dependent Regulation of Metastasis and Immune Evasion Across Human Malignancies"

    Article Title: Dual-Faced Role of GDF6 in Cancer: Mechanistic Insights into Its Context-Dependent Regulation of Metastasis and Immune Evasion Across Human Malignancies

    Journal: Current Issues in Molecular Biology

    doi: 10.3390/cimb47040249

    The expression of GDF6 in various human normal tissues and tumor tissues. ( A ) The mRNA expression of GDF6 in normal human tissues. ( B ) GDF6 expression in tumors and healthy tissues (TCGA database). Tumor types with significantly downregulated GDF6 expression ( C ) and those with significantly upregulated expression ( D ) in the TCGA + GTEx databases. * p < 0.05; ** p < 0.01; *** p < 0.001; **** p < 0.0001.
    Figure Legend Snippet: The expression of GDF6 in various human normal tissues and tumor tissues. ( A ) The mRNA expression of GDF6 in normal human tissues. ( B ) GDF6 expression in tumors and healthy tissues (TCGA database). Tumor types with significantly downregulated GDF6 expression ( C ) and those with significantly upregulated expression ( D ) in the TCGA + GTEx databases. * p < 0.05; ** p < 0.01; *** p < 0.001; **** p < 0.0001.

    Techniques Used: Expressing

    Related Articles

    other:

    Article Title: A paradigm shift in cancer research based on integrative multi-omics approaches: glutaminase serves as a pioneering cuproptosis-related gene in pan-cancer
    Article Snippet: Normal tissue data were downloaded from the Human Protein Atlas (HPA) database (integration of proteomic data across various tissues and cell types) ( https://www.proteinatlas.org/ ) [ ], and the data from cancer cell lines were acquired from the Cancer Cell Line Encyclopedia (CCLE) database (Encompassing the most comprehensive gene data from human cancer cell lines) ( https://sites.broadinstitute.org/ccle/ ) [ ].

    Article Title: Base editing of trinucleotide repeats that cause Huntington’s disease and Friedreich’s ataxia reduces somatic repeat expansions in patient cells and in mice
    Article Snippet: The normal tissue database from the Human Protein Atlas was used to check whether the coding loci or genes are expressed in brain-related tissues .

    Article Title: Base editing of trinucleotide repeats that cause Huntington's disease and Friedreich's ataxia reduces somatic repeat expansions in patient cells and in mice.
    Article Snippet: The normal tissue database from the Human Protein Atlas was used to check whether the coding loci or genes are expressed in brain-related tissues105.

    Expressing:

    Article Title:
    Article Snippet: .. For RAB32 protein expression we downloaded normal tissue data from Human Protein Atlas https://www.proteinatlas.org/, accessed on 02/08/2023). ..

    Article Title: Dual-Faced Role of GDF6 in Cancer: Mechanistic Insights into Its Context-Dependent Regulation of Metastasis and Immune Evasion Across Human Malignancies
    Article Snippet: .. Normal tissue expression data were sourced from the Human Protein Atlas (HPA; https://www.proteinatlas.org , accessed on 15 February 2025). ..

    Article Title: Tissue-adjusted pathway analysis of cancer (TPAC): A novel approach for quantifying tumor-specific gene set dysregulation relative to normal tissue.
    Article Snippet: .. As we demonstrate through an analysis of gene expression data for 21 solid human cancers from The Cancer Genome Atlas (TCGA) and associated normal tissue expression data from the Human Protein Atlas (HPA), TPAC gene set scores are more strongly associated with patient prognosis than the scores generated by existing single sample gene set testing methods. ..

    Article Title: Somatic instability of the FGF14 -SCA27B GAA•TTC repeat reveals a marked expansion bias in the cerebellum
    Article Snippet: .. Finally, we correlated the somatic instability indices with the expression of FGF14 in normal tissue data from the Human Protein Atlas (HPA v.23.0; proteinatlas.org accessed 27 March 2024). ..

    Gene Expression:

    Article Title: Tissue-adjusted pathway analysis of cancer (TPAC): A novel approach for quantifying tumor-specific gene set dysregulation relative to normal tissue.
    Article Snippet: .. As we demonstrate through an analysis of gene expression data for 21 solid human cancers from The Cancer Genome Atlas (TCGA) and associated normal tissue expression data from the Human Protein Atlas (HPA), TPAC gene set scores are more strongly associated with patient prognosis than the scores generated by existing single sample gene set testing methods. ..

    Generated:

    Article Title: Tissue-adjusted pathway analysis of cancer (TPAC): A novel approach for quantifying tumor-specific gene set dysregulation relative to normal tissue.
    Article Snippet: .. As we demonstrate through an analysis of gene expression data for 21 solid human cancers from The Cancer Genome Atlas (TCGA) and associated normal tissue expression data from the Human Protein Atlas (HPA), TPAC gene set scores are more strongly associated with patient prognosis than the scores generated by existing single sample gene set testing methods. ..



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    Image Search Results


    The expression of GDF6 in various human normal tissues and tumor tissues. ( A ) The mRNA expression of GDF6 in normal human tissues. ( B ) GDF6 expression in tumors and healthy tissues (TCGA database). Tumor types with significantly downregulated GDF6 expression ( C ) and those with significantly upregulated expression ( D ) in the TCGA + GTEx databases. * p < 0.05; ** p < 0.01; *** p < 0.001; **** p < 0.0001.

    Journal: Current Issues in Molecular Biology

    Article Title: Dual-Faced Role of GDF6 in Cancer: Mechanistic Insights into Its Context-Dependent Regulation of Metastasis and Immune Evasion Across Human Malignancies

    doi: 10.3390/cimb47040249

    Figure Lengend Snippet: The expression of GDF6 in various human normal tissues and tumor tissues. ( A ) The mRNA expression of GDF6 in normal human tissues. ( B ) GDF6 expression in tumors and healthy tissues (TCGA database). Tumor types with significantly downregulated GDF6 expression ( C ) and those with significantly upregulated expression ( D ) in the TCGA + GTEx databases. * p < 0.05; ** p < 0.01; *** p < 0.001; **** p < 0.0001.

    Article Snippet: Normal tissue expression data were sourced from the Human Protein Atlas (HPA; https://www.proteinatlas.org , accessed on 15 February 2025).

    Techniques: Expressing

    The expression level of TGIF2 in different human cancers and its relationship to glioma prognosis. (A) TGIF2 mRNA expression across various human organs and tissues based on consensus dataset in HPA database. (B) Comparison of TGIF2 expression between normal and tumor tissues across 33 cancers in TCGA and the GTEx database. (C) Subcellular localization of TGIF2 in SH-SY5Y cells from HPA datasets. (D) The volcano plot of DEGs in GSE14805. Red points represent upregulated, blue points represents downregulated genes. (E) ROC curve of TGIF2 and other established prognostic genes (IDH1, IDH2, EGFR, TP53, CDC6, CDC14B, CHD5) in glioma. (F–H) Survival curves for OS (F) , DSS (G) and PFI (H) in gliomas using TCGA database. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001.

    Journal: Frontiers in Immunology

    Article Title: TGIF2 is a potential biomarker for diagnosis and prognosis of glioma

    doi: 10.3389/fimmu.2024.1356833

    Figure Lengend Snippet: The expression level of TGIF2 in different human cancers and its relationship to glioma prognosis. (A) TGIF2 mRNA expression across various human organs and tissues based on consensus dataset in HPA database. (B) Comparison of TGIF2 expression between normal and tumor tissues across 33 cancers in TCGA and the GTEx database. (C) Subcellular localization of TGIF2 in SH-SY5Y cells from HPA datasets. (D) The volcano plot of DEGs in GSE14805. Red points represent upregulated, blue points represents downregulated genes. (E) ROC curve of TGIF2 and other established prognostic genes (IDH1, IDH2, EGFR, TP53, CDC6, CDC14B, CHD5) in glioma. (F–H) Survival curves for OS (F) , DSS (G) and PFI (H) in gliomas using TCGA database. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001.

    Article Snippet: The mRNA expression data of TGIF2 in normal tissues and subcellular localization of TGIF2 protein in SH-SY5Y cell line were sourced from Human Protein Atlas (HPA) database ( http://www.proteinatlas.org/ ).

    Techniques: Expressing, Comparison

    Clinical characteristics of glioma patients.

    Journal: Frontiers in Immunology

    Article Title: TGIF2 is a potential biomarker for diagnosis and prognosis of glioma

    doi: 10.3389/fimmu.2024.1356833

    Figure Lengend Snippet: Clinical characteristics of glioma patients.

    Article Snippet: The mRNA expression data of TGIF2 in normal tissues and subcellular localization of TGIF2 protein in SH-SY5Y cell line were sourced from Human Protein Atlas (HPA) database ( http://www.proteinatlas.org/ ).

    Techniques:

    Logistic analysis of the association between TGIF2 expression and clinical characteristics.

    Journal: Frontiers in Immunology

    Article Title: TGIF2 is a potential biomarker for diagnosis and prognosis of glioma

    doi: 10.3389/fimmu.2024.1356833

    Figure Lengend Snippet: Logistic analysis of the association between TGIF2 expression and clinical characteristics.

    Article Snippet: The mRNA expression data of TGIF2 in normal tissues and subcellular localization of TGIF2 protein in SH-SY5Y cell line were sourced from Human Protein Atlas (HPA) database ( http://www.proteinatlas.org/ ).

    Techniques: Expressing

    Associations between TGIF2 expression and various clinicopathologic characteristics in glioma. (A) Age. (B) IDH status. (C) 1p/19q codeletion status. (D) Primary therapy outcome. (E) OS events. (F) DSS events. (G) PFI events. (H) WHO grade. (I) Histological type. (J) Gender. (K) Race. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001, ns, not significant.

    Journal: Frontiers in Immunology

    Article Title: TGIF2 is a potential biomarker for diagnosis and prognosis of glioma

    doi: 10.3389/fimmu.2024.1356833

    Figure Lengend Snippet: Associations between TGIF2 expression and various clinicopathologic characteristics in glioma. (A) Age. (B) IDH status. (C) 1p/19q codeletion status. (D) Primary therapy outcome. (E) OS events. (F) DSS events. (G) PFI events. (H) WHO grade. (I) Histological type. (J) Gender. (K) Race. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001, ns, not significant.

    Article Snippet: The mRNA expression data of TGIF2 in normal tissues and subcellular localization of TGIF2 protein in SH-SY5Y cell line were sourced from Human Protein Atlas (HPA) database ( http://www.proteinatlas.org/ ).

    Techniques: Expressing

    Prognostic value of TGIF2 expression level in glioma. (A) TGIF2 expression distribution and survival status. (B) Time-dependent ROC curves for TGIF2 expression in glioma. (C) Forest plot of OS by multivariate Cox regression analysis in glioma from TCGA database. (D) The nomogram for predicting 1-, 3-, or 5-year OS rates in patients with glioma. (E) The calibration curves for the nomogram.

    Journal: Frontiers in Immunology

    Article Title: TGIF2 is a potential biomarker for diagnosis and prognosis of glioma

    doi: 10.3389/fimmu.2024.1356833

    Figure Lengend Snippet: Prognostic value of TGIF2 expression level in glioma. (A) TGIF2 expression distribution and survival status. (B) Time-dependent ROC curves for TGIF2 expression in glioma. (C) Forest plot of OS by multivariate Cox regression analysis in glioma from TCGA database. (D) The nomogram for predicting 1-, 3-, or 5-year OS rates in patients with glioma. (E) The calibration curves for the nomogram.

    Article Snippet: The mRNA expression data of TGIF2 in normal tissues and subcellular localization of TGIF2 protein in SH-SY5Y cell line were sourced from Human Protein Atlas (HPA) database ( http://www.proteinatlas.org/ ).

    Techniques: Expressing

    Univariate and multivariate cox regression analyses of clinical characteristics associated with overall survival.

    Journal: Frontiers in Immunology

    Article Title: TGIF2 is a potential biomarker for diagnosis and prognosis of glioma

    doi: 10.3389/fimmu.2024.1356833

    Figure Lengend Snippet: Univariate and multivariate cox regression analyses of clinical characteristics associated with overall survival.

    Article Snippet: The mRNA expression data of TGIF2 in normal tissues and subcellular localization of TGIF2 protein in SH-SY5Y cell line were sourced from Human Protein Atlas (HPA) database ( http://www.proteinatlas.org/ ).

    Techniques:

    Correlations between TGIF2 expression level and OS in different clinicopathologic subgroups of glioma by Kaplan-Meier survival curve analysis. (A) Age ≤ 60. (B) Age > 60. (C) Gender: Male. (D) Gender: Female. (E) Race: White. (F) WHO grade: G3. (G) 1p/19q codeletion: non-codeletion. (H) Histological type: Astrocytoma. (I) Primary therapy outcome: PD.

    Journal: Frontiers in Immunology

    Article Title: TGIF2 is a potential biomarker for diagnosis and prognosis of glioma

    doi: 10.3389/fimmu.2024.1356833

    Figure Lengend Snippet: Correlations between TGIF2 expression level and OS in different clinicopathologic subgroups of glioma by Kaplan-Meier survival curve analysis. (A) Age ≤ 60. (B) Age > 60. (C) Gender: Male. (D) Gender: Female. (E) Race: White. (F) WHO grade: G3. (G) 1p/19q codeletion: non-codeletion. (H) Histological type: Astrocytoma. (I) Primary therapy outcome: PD.

    Article Snippet: The mRNA expression data of TGIF2 in normal tissues and subcellular localization of TGIF2 protein in SH-SY5Y cell line were sourced from Human Protein Atlas (HPA) database ( http://www.proteinatlas.org/ ).

    Techniques: Expressing

    Functional enrichment analysis of DEGs between TGIF2 high and low expression groups. (A) The volcano plot of DEGs. Red represents upregulated, blue represents downregulated genes. (B) GO and KEGG pathway enrichment analysis of DEGs. (C–H) GSEA functional enrichment analysis.

    Journal: Frontiers in Immunology

    Article Title: TGIF2 is a potential biomarker for diagnosis and prognosis of glioma

    doi: 10.3389/fimmu.2024.1356833

    Figure Lengend Snippet: Functional enrichment analysis of DEGs between TGIF2 high and low expression groups. (A) The volcano plot of DEGs. Red represents upregulated, blue represents downregulated genes. (B) GO and KEGG pathway enrichment analysis of DEGs. (C–H) GSEA functional enrichment analysis.

    Article Snippet: The mRNA expression data of TGIF2 in normal tissues and subcellular localization of TGIF2 protein in SH-SY5Y cell line were sourced from Human Protein Atlas (HPA) database ( http://www.proteinatlas.org/ ).

    Techniques: Functional Assay, Expressing

    Correlations between TGIF2 expression and immune cell infiltration in glioma. (A–C) Comparison of StromalScore, ImmuneScore, and EstimateScore between TGIF2 high and low expression groups. (D, E) Comparison of immune cell enrichment scores in high and low TGIF2 expression groups. (F) The lollipop chart showing the correlations between the relative abundances of 24 immune cells and TGIF2 expression levels. (G–N) Scatterplots demonstrating the positive correlation of TGIF2 expression with Th2 cells, macrophages, eosinophils, and neutrophils, and the negative correlation with mast cells, NK CD56bright cells, pDC cells, and TFH cells. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001, ns, not significant.

    Journal: Frontiers in Immunology

    Article Title: TGIF2 is a potential biomarker for diagnosis and prognosis of glioma

    doi: 10.3389/fimmu.2024.1356833

    Figure Lengend Snippet: Correlations between TGIF2 expression and immune cell infiltration in glioma. (A–C) Comparison of StromalScore, ImmuneScore, and EstimateScore between TGIF2 high and low expression groups. (D, E) Comparison of immune cell enrichment scores in high and low TGIF2 expression groups. (F) The lollipop chart showing the correlations between the relative abundances of 24 immune cells and TGIF2 expression levels. (G–N) Scatterplots demonstrating the positive correlation of TGIF2 expression with Th2 cells, macrophages, eosinophils, and neutrophils, and the negative correlation with mast cells, NK CD56bright cells, pDC cells, and TFH cells. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001, ns, not significant.

    Article Snippet: The mRNA expression data of TGIF2 in normal tissues and subcellular localization of TGIF2 protein in SH-SY5Y cell line were sourced from Human Protein Atlas (HPA) database ( http://www.proteinatlas.org/ ).

    Techniques: Expressing, Comparison

    Analysis of genes coexpressed with TGIF2 in glioma. (A) Heatmap showing the 30 genes in glioma that were 15 positively and 15 negatively related to TGIF2. (B) PPI network of top 50 protein-coding genes positively and negatively correlated with TGIF2. (C) The top 10 hub genes of the PPI network in (B) . (D) The expression levels of the top 10 hub genes in normal and glioma tissues in TCGA and GTEx database. ∗∗∗p < 0.001.

    Journal: Frontiers in Immunology

    Article Title: TGIF2 is a potential biomarker for diagnosis and prognosis of glioma

    doi: 10.3389/fimmu.2024.1356833

    Figure Lengend Snippet: Analysis of genes coexpressed with TGIF2 in glioma. (A) Heatmap showing the 30 genes in glioma that were 15 positively and 15 negatively related to TGIF2. (B) PPI network of top 50 protein-coding genes positively and negatively correlated with TGIF2. (C) The top 10 hub genes of the PPI network in (B) . (D) The expression levels of the top 10 hub genes in normal and glioma tissues in TCGA and GTEx database. ∗∗∗p < 0.001.

    Article Snippet: The mRNA expression data of TGIF2 in normal tissues and subcellular localization of TGIF2 protein in SH-SY5Y cell line were sourced from Human Protein Atlas (HPA) database ( http://www.proteinatlas.org/ ).

    Techniques: Expressing

    Knockdown of TGIF2 inhibits glioma cell invasion, migration and EMT in vitro . (A) Bar graph demonstrating the efficiency of siRNA knockdown of TGIF2 mRNA in U251 cells by RT-qPCR. (B) Western blot assay showing that siRNA effectively knocked down TGIF2 protein, and siTGIF2 downregulated N-cadherin protein expression in U251 cells. (C) Transwell assay demonstrating changes in the number of cells invaded after knockdown of TGIF2. Scale bar, 500 μm. (D) Scratch wound-healing assays were utilized to compare the distance of cell migration between TGIF2-inhibited group and control group at 0h and 24h after scratching. Scale bar, 500 μm. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001.

    Journal: Frontiers in Immunology

    Article Title: TGIF2 is a potential biomarker for diagnosis and prognosis of glioma

    doi: 10.3389/fimmu.2024.1356833

    Figure Lengend Snippet: Knockdown of TGIF2 inhibits glioma cell invasion, migration and EMT in vitro . (A) Bar graph demonstrating the efficiency of siRNA knockdown of TGIF2 mRNA in U251 cells by RT-qPCR. (B) Western blot assay showing that siRNA effectively knocked down TGIF2 protein, and siTGIF2 downregulated N-cadherin protein expression in U251 cells. (C) Transwell assay demonstrating changes in the number of cells invaded after knockdown of TGIF2. Scale bar, 500 μm. (D) Scratch wound-healing assays were utilized to compare the distance of cell migration between TGIF2-inhibited group and control group at 0h and 24h after scratching. Scale bar, 500 μm. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001.

    Article Snippet: The mRNA expression data of TGIF2 in normal tissues and subcellular localization of TGIF2 protein in SH-SY5Y cell line were sourced from Human Protein Atlas (HPA) database ( http://www.proteinatlas.org/ ).

    Techniques: Knockdown, Migration, In Vitro, Quantitative RT-PCR, Western Blot, Expressing, Transwell Assay, Control

    Knockout of TGIF2 suppresses glioma cell invasion, migration and EMT. (A) The gRNA sequences designed targeting exon 2 of TGIF2. (B) The editing efficiency of gRNA33 and gRNA140 on TGIF2 was verified in 293T cells utilizing Sanger sequencing. (C) TGIF2-gRNA33 in the UCSC browser. (D) Western blot assay showing the knockout efficiency of TGIF2 protein. WT, Wild type; KO, Knockout. (E) Transwell assays showing changes in the number of cells invaded after knockout of TGIF2. Scale bar, 500 μm. (F) Scratch wound-healing assays were utilized to compare the distance of cell migration between TGIF2-knockout group and control group at 0h and 24h after scratching. Scale bar, 250 μm. ∗p < 0.05.

    Journal: Frontiers in Immunology

    Article Title: TGIF2 is a potential biomarker for diagnosis and prognosis of glioma

    doi: 10.3389/fimmu.2024.1356833

    Figure Lengend Snippet: Knockout of TGIF2 suppresses glioma cell invasion, migration and EMT. (A) The gRNA sequences designed targeting exon 2 of TGIF2. (B) The editing efficiency of gRNA33 and gRNA140 on TGIF2 was verified in 293T cells utilizing Sanger sequencing. (C) TGIF2-gRNA33 in the UCSC browser. (D) Western blot assay showing the knockout efficiency of TGIF2 protein. WT, Wild type; KO, Knockout. (E) Transwell assays showing changes in the number of cells invaded after knockout of TGIF2. Scale bar, 500 μm. (F) Scratch wound-healing assays were utilized to compare the distance of cell migration between TGIF2-knockout group and control group at 0h and 24h after scratching. Scale bar, 250 μm. ∗p < 0.05.

    Article Snippet: The mRNA expression data of TGIF2 in normal tissues and subcellular localization of TGIF2 protein in SH-SY5Y cell line were sourced from Human Protein Atlas (HPA) database ( http://www.proteinatlas.org/ ).

    Techniques: Knock-Out, Migration, Sequencing, Western Blot, Control