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raw ngs data in fastq format (Oxford Nanopore)

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Oxford Nanopore raw ngs data in fastq format

Genome Detective Coronavirus Typing Tool assembles genomes from next generation sequencing <t>(NGS)</t> in FASTAQ format <t>or</t> <t>assembled</t> genomes in FASTA format. A user can submit up to 1Gb of NGS data or 2,000 assembled genomic sequences. For each assembled genomic sequence, the tool identifies the virus species, constructs a phylogenetic tree and identifies phylogenetic clusters, which includes the novel coronavirus identified in Wuhan China in 2019 (2019-nCoV). The tool identifies changes at nucleotides, coding regions and proteins using a novel dynamic aligner and display all of the mutations in detailed tables and reports.

Raw Ngs Data In Fastq Format, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ngs+data/raw+ngs+data+in+fastq+format/pmc07217295-79-8-20
Average 90 stars, based on 1 article reviews

raw ngs data in fastq format - by Bioz Stars, 2026-11

90/100 stars

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Article Title: Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes

Journal: bioRxiv

doi: 10.1101/2020.01.31.928796

Genome Detective Coronavirus Typing Tool assembles genomes from next generation sequencing (NGS) in FASTAQ format or assembled genomes in FASTA format. A user can submit up to 1Gb of NGS data or 2,000 assembled genomic sequences. For each assembled genomic sequence, the tool identifies the virus species, constructs a phylogenetic tree and identifies phylogenetic clusters, which includes the novel coronavirus identified in Wuhan China in 2019 (2019-nCoV). The tool identifies changes at nucleotides, coding regions and proteins using a novel dynamic aligner and display all of the mutations in detailed tables and reports.

Figure Legend Snippet: Genome Detective Coronavirus Typing Tool assembles genomes from next generation sequencing (NGS) in FASTAQ format or assembled genomes in FASTA format. A user can submit up to 1Gb of NGS data or 2,000 assembled genomic sequences. For each assembled genomic sequence, the tool identifies the virus species, constructs a phylogenetic tree and identifies phylogenetic clusters, which includes the novel coronavirus identified in Wuhan China in 2019 (2019-nCoV). The tool identifies changes at nucleotides, coding regions and proteins using a novel dynamic aligner and display all of the mutations in detailed tables and reports.

Techniques Used: Next-Generation Sequencing, Genomic Sequencing, Sequencing, Virus, Construct

Next-Generation Sequencing:

Article Title: Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
Article Snippet: .. It accepts assembled genomes in FASTA format or raw NGS data in FASTQ format from Illumina, Ion Torrent, PACBIO or Oxford Nanopore Technologies (ONT) can be submitted to the Genome Detective Virus Tool ( ) to automatically assemble the consensus genome prior to executing the Coronavirus Typing Tool. ..

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raw ngs data in fastq format (Oxford Nanopore)

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