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visual coding - neuropixels dataset  (Allen Institute for Brain Science)

 
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    Allen Institute for Brain Science visual coding - neuropixels dataset
    Visual Coding Neuropixels Dataset, supplied by Allen Institute for Brain Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/neuropixels+visual+coding+dataset/visual+coding+dataset/pm38759641-242-0-6
    Average 90 stars, based on 1 article reviews
    visual coding - neuropixels dataset - by Bioz Stars, 2026-10
    90/100 stars

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    Article Title: Distinct feedforward and feedback pathways for cell-type specific attention effects.
    Article Snippet: 12751/g-node.b0mnn2 Visual Coding - Neuropixels Dataset Allen Institute for Brain Science https://portal.brain-map.org/circuits- behavior/visual-coding-neuropixels Experimental models: Organisms/strains Rhesus Macaque (Macaca mulatta) Medical Research Council Center for Macaques (MRC CFM) N/A Software and algorithms MATLAB MathWorks https://mathworks.com/ Fieldtrip Open Source https://www.fieldtriptoolbox.org/

    Article Title: Distinct feedforward and feedback pathways for cell-type specific attention effects.
    Article Snippet: Indices quantifying the selectivity of SUs, recorded in mice, to grating properties (orientation, direction, and temporal frequency) were included in the Visual Coding Neuropixels dataset provided by the Allen Institute for Brain Science.

    Article Title: SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.
    Article Snippet: To this end, we analysed Neuropixel data from 32 mice while they passively viewed natural images (dataset from the Allen Institute for Brain Science; see Methods).

    Article Title: Anatomically resolved oscillatory bursts reveal dynamic motifs of thalamocortical activity during naturalistic stimulus viewing.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Deposited data Allen Brain Observatory – Visual Coding Neuropixels dataset Allen Institute for Brain Science https://portal.brain-map.org/circuits-behavior/ visual-coding-neuropixels Software and algorithms MATLAB2021a The MathWorks https://mathworks.com/; RRID:SCR_001622 Custom Matlab scripts This paper https://doi.org/10.12751/g-node.pxmx5b Circular Statistics Toolbox Philipp Berens, Matlab File Exchange https://de.mathworks.com/matlabcentral/fileexchange/ 10676-circular-statistics-toolbox-directional-statistics EarthMoversDistance package Urmas Yilmaz, Matlab File Exchange https://de.mathworks.com/matlabcentral/fileexchange/ 22962-the-earth-mover-s-distance ARfit Toolbox Schneider & Neumaier, Matlab File Exchange https://de.mathworks.com/matlabcentral/ fileexchange/174-arfit Benjamini-Hochberg FDR correction function David Groppe, Matlab File Exchange https://de.mathworks.com/matlabcentral/ fileexchange/27418-fdr_bh Optic flow function Black Cat Science, Matlab File Exchange https://de.mathworks.com/matlabcentral/ fileexchange/49012-optical-flow-algorithm

    Article Title: Prediction of future input explains lateral connectivity in primary visual cortex.
    Article Snippet: Experimental data used for neural response prediction was taken from the Allen Institute for Brain Science Neuropixels Visual Coding dataset, whose detailed experimental procedures have been published elsewhere.17 The dataset used for neural fitting was comprised of recordings from 15 male wildtype C57BL6/J mice (n = 739 neurons).

    Article Title: Flexible neural population dynamics govern the speed and stability of sensory encoding in mouse visual cortex
    Article Snippet: These speeds were chosen based on a preliminary analysis of the ‘Visual Coding’ dataset from the Allen Institute for Brain Science which showed that they evoke strong responses in mouse V1.

    Software:

    Article Title: Tracking the Distance to Criticality in Systems with Unknown Noise
    Article Snippet: .. For the electrophysiological application presented in Sec. III E, we accessed all Neuropixels Visual Behavior data (manifest v0.5.0) through open software published by the Allen Institute for Brain Science (the allensdk [150]) using the Julialanguage wrapper AllenNeuropixelsBase.jl [151]. ..

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