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imaris  (Oxford Instruments)


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Bioz Manufacturer Symbol Oxford Instruments manufactures this product  
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    Oxford Instruments imaris
    Imaris, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 44474 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/network-based+visual+analytics+tool/Imaris/custom%40imaris%4030040215
    Average 99 stars, based on 44474 article reviews
    imaris - by Bioz Stars, 2026-10
    99/100 stars

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    Related Articles

    Software:

    Article Title: Morphological plasticity facilitates lung adaptation and dynamic immune remodeling in Mycobacterium abscessus infection
    Article Snippet: .. To quantify bacterial internalization versus extracellular adherence, z-stack images (step size: 0.3 μm) were acquired and subjected to 3D volumetric reconstruction using Imaris v9.5 software. ..

    Article Title: Chrysanthemum Morifolium– Derived Nanovesicles Reduce Lactate‐Associated Histone Lactylation and Modulate Microglia‐Mediated Neuroinflammation in Sepsis‐Associated Encephalopathy
    Article Snippet: An excitation wavelength of 488 nm and emission wavelength of 519 nm were employed to visualize the Iba‐1 protein. .. Images of microglial branch nodes (1024 × 1024 pixel) and total branch length were reconstructed and quantitatively analyzed using the “Filaments” module of the Imaris 10.1.0 software. ..

    Morphology:

    Article Title: Frontal cortical neuroinflammation and circulating biomarkers following cardiopulmonary bypass in sheep.
    Article Snippet: Images were acquired using the Nikon-Crest Spinning Disk Confocal microscope, at 40× magnification (objective Plan-Apochromat, 40×/1.25, silicone), with the systemrecommended 0.35 μm step size for a z-stack size of 20.1 μm. .. Microglial morphology was analysed in Imaris v10.2 (Oxford Instruments, Abingdon, UK) [30]. ..

    other:

    Article Title: Multiple motor proteins regulate TDP-43 anterograde axonal transport.
    Article Snippet: a—top Representative micrographs of particles movement, segmentation and tracking determined with Imaris spots tracking algorithms.



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    Proteomic analysis in the insoluble fraction of α-syn PFF treated M83 neurons. A M83 neurons treated with α-syn PFFs or PBS for 14± 1 and 21± 1 days were sequentially extracted with 1% Triton X-100 followed by 2% SDS. Western blot analysis showed significant enrichment of pS129 α-syn in the Triton X-100 insoluble fraction from PFF treated neuron samples. With PBS treatment, α-syn was extracted in 1% Triton X-100 fraction. B Insoluble fractions analyzed by Mass spectrometry <t>identified</t> 92 proteins that were changed in the total proteome with PFF treatment at logFC cutoff of ≥ 0.25. An enrichment analysis using metascape for these 92 proteins was performed, which identified membrane/vesicle trafficking, autophagy, endocytosis, and exocytosis mechanisms. C Based on a stringent cutoff of 0.999 in CPDB, a first order network of these 92 proteins including 1640 proteins and 4,738 interactors was generated. Based on this, a zero-order network was established using the internally developed network-based visual <t>analytics</t> <t>tool</t> to identify enriched pathways which are shown in the figure. The most enriched pathways in this network included the mitochondrial pathway, translation, ubiquitin related, lysosome, unfolded protein response, vesicle trafficking and mRNA splicing
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    Image Search Results


    Proteomic analysis in the insoluble fraction of α-syn PFF treated M83 neurons. A M83 neurons treated with α-syn PFFs or PBS for 14± 1 and 21± 1 days were sequentially extracted with 1% Triton X-100 followed by 2% SDS. Western blot analysis showed significant enrichment of pS129 α-syn in the Triton X-100 insoluble fraction from PFF treated neuron samples. With PBS treatment, α-syn was extracted in 1% Triton X-100 fraction. B Insoluble fractions analyzed by Mass spectrometry identified 92 proteins that were changed in the total proteome with PFF treatment at logFC cutoff of ≥ 0.25. An enrichment analysis using metascape for these 92 proteins was performed, which identified membrane/vesicle trafficking, autophagy, endocytosis, and exocytosis mechanisms. C Based on a stringent cutoff of 0.999 in CPDB, a first order network of these 92 proteins including 1640 proteins and 4,738 interactors was generated. Based on this, a zero-order network was established using the internally developed network-based visual analytics tool to identify enriched pathways which are shown in the figure. The most enriched pathways in this network included the mitochondrial pathway, translation, ubiquitin related, lysosome, unfolded protein response, vesicle trafficking and mRNA splicing

    Journal: Molecular Brain

    Article Title: Broad proteomics analysis of seeding-induced aggregation of α-synuclein in M83 neurons reveals remodeling of proteostasis mechanisms that might contribute to Parkinson’s disease pathogenesis

    doi: 10.1186/s13041-024-01099-1

    Figure Lengend Snippet: Proteomic analysis in the insoluble fraction of α-syn PFF treated M83 neurons. A M83 neurons treated with α-syn PFFs or PBS for 14± 1 and 21± 1 days were sequentially extracted with 1% Triton X-100 followed by 2% SDS. Western blot analysis showed significant enrichment of pS129 α-syn in the Triton X-100 insoluble fraction from PFF treated neuron samples. With PBS treatment, α-syn was extracted in 1% Triton X-100 fraction. B Insoluble fractions analyzed by Mass spectrometry identified 92 proteins that were changed in the total proteome with PFF treatment at logFC cutoff of ≥ 0.25. An enrichment analysis using metascape for these 92 proteins was performed, which identified membrane/vesicle trafficking, autophagy, endocytosis, and exocytosis mechanisms. C Based on a stringent cutoff of 0.999 in CPDB, a first order network of these 92 proteins including 1640 proteins and 4,738 interactors was generated. Based on this, a zero-order network was established using the internally developed network-based visual analytics tool to identify enriched pathways which are shown in the figure. The most enriched pathways in this network included the mitochondrial pathway, translation, ubiquitin related, lysosome, unfolded protein response, vesicle trafficking and mRNA splicing

    Article Snippet: Visualization of this network containing 1328 proteins and 3621 interactions using internally developed network-based visual analytics tool identified modules involved in proteostasis.

    Techniques: Western Blot, Mass Spectrometry, Membrane, Generated, Ubiquitin Proteomics