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10X Genomics mouse reference transcriptome
Mouse Reference Transcriptome, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mouse+reference+transcriptome/mouse+transcriptome/pmc11866521-462-10-17
Average 86 stars, based on 1 article reviews
mouse reference transcriptome - by Bioz Stars, 2026-09
86/100 stars

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Article Title: Perturb-Multimodal: a platform for pooled genetic screens with sequencing and imaging in intact mammalian tissue
Article Snippet: Chromium Fixed RNA Kit, Mouse Transcriptome, 4rxns x 4 BC , 10x Genomics , Cat#: 1000496.

Sequencing:

Article Title: Iba1 deficiency impairs microglial synaptic remodeling and neuronal survival after axonal injury.
Article Snippet: .. Subsequent steps—including sample pooling, generation of single-nucleus emulsions, and sequencing library preparation—were performed using the Chromium Fixed RNA Kit for Mouse Transcriptome (10x Genomics, #1000496). .. The resulting sequencing libraries were quality-controlled using a Qubit dsDNA Assay Kit (Thermo Fisher Scientific) and a TapeStation D1000 System (Agilent Technologies), and sequencing was performed on an Illumina NovaSeq 6000 platform.

Cell Counting:

Article Title: An ex vivo uterine system captures implantation, embryogenesis, and trophoblast invasion via maternal-embryonic signaling.
Article Snippet: Isolated sampleswere processedusingChromiumNext GEM Single Cell Fixed RNA Sample Preparation Kit (PN-1000414, 10x genomics, USA), and tissue dissociation was performed with Liberase TL (05401020001, Roche, Switzerland) in RPMI1640 (11875093, Thermo Fisher Scientific, USA) using gentleMACS Octo Dissociator with Heaters (Miltenyi Biotech, Germany). .. After cell counting, the single-cell suspension was treated for RNA sequencing library preparation with Chromium Fixed RNA Kit, Mouse Transcriptome (PN1000496, 10x genomics, USA), Chromium Mouse Transcriptome Probe Set v1.0.1 (10x genomics, USA), andChromiumX (10x genomics, USA). .. Then, paired-end sequencing was performed on an Illumina next-generation sequencer NovaSeq X Plus (Illumina, USA).

Article Title: An ex vivo uterine system captures implantation, embryogenesis, and trophoblast invasion via maternal-embryonic signaling
Article Snippet: Isolated samples were processed using Chromium Next GEM Single Cell Fixed RNA Sample Preparation Kit (PN-1000414, 10x genomics, USA), and tissue dissociation was performed with Liberase TL (05401020001, Roche, Switzerland) in RPMI1640 (11875093, Thermo Fisher Scientific, USA) using gentleMACS Octo Dissociator with Heaters (Miltenyi Biotech, Germany). .. After cell counting, the single-cell suspension was treated for RNA sequencing library preparation with Chromium Fixed RNA Kit, Mouse Transcriptome (PN-1000496, 10x genomics, USA), Chromium Mouse Transcriptome Probe Set v1.0.1 (10x genomics, USA), and Chromium X (10x genomics, USA). .. Then, paired-end sequencing was performed on an Illumina next-generation sequencer NovaSeq X Plus (Illumina, USA).

Single Cell:

Article Title: An ex vivo uterine system captures implantation, embryogenesis, and trophoblast invasion via maternal-embryonic signaling.
Article Snippet: Isolated sampleswere processedusingChromiumNext GEM Single Cell Fixed RNA Sample Preparation Kit (PN-1000414, 10x genomics, USA), and tissue dissociation was performed with Liberase TL (05401020001, Roche, Switzerland) in RPMI1640 (11875093, Thermo Fisher Scientific, USA) using gentleMACS Octo Dissociator with Heaters (Miltenyi Biotech, Germany). .. After cell counting, the single-cell suspension was treated for RNA sequencing library preparation with Chromium Fixed RNA Kit, Mouse Transcriptome (PN1000496, 10x genomics, USA), Chromium Mouse Transcriptome Probe Set v1.0.1 (10x genomics, USA), andChromiumX (10x genomics, USA). .. Then, paired-end sequencing was performed on an Illumina next-generation sequencer NovaSeq X Plus (Illumina, USA).

Article Title: Mapping neuro-vascular unit communications reveals distinct angiogenic programs across developing mouse brain regions.
Article Snippet: .. Multiplexed libraries were prepared using the Chromium Next GEM Single Cell Fixed RNA Kit, Mouse Transcriptome, 4rxns x 4 BC (# 1000496, 10x Genomics; Pleasanton, CA, USA) AR TI CL E IN P RE SS according to the manufacturer’s instructions. .. After a PBS step washing, the myelin and the cell debris were separated from the pelleted cells by using the debris removal solution (Miltenyi Biotec, 130-109-398) and the cells were washed with PBS before proceeding to the red blood cell lysis (Miltenyi Biotec, 130-094-183).

Article Title: An ex vivo uterine system captures implantation, embryogenesis, and trophoblast invasion via maternal-embryonic signaling
Article Snippet: Isolated samples were processed using Chromium Next GEM Single Cell Fixed RNA Sample Preparation Kit (PN-1000414, 10x genomics, USA), and tissue dissociation was performed with Liberase TL (05401020001, Roche, Switzerland) in RPMI1640 (11875093, Thermo Fisher Scientific, USA) using gentleMACS Octo Dissociator with Heaters (Miltenyi Biotech, Germany). .. After cell counting, the single-cell suspension was treated for RNA sequencing library preparation with Chromium Fixed RNA Kit, Mouse Transcriptome (PN-1000496, 10x genomics, USA), Chromium Mouse Transcriptome Probe Set v1.0.1 (10x genomics, USA), and Chromium X (10x genomics, USA). .. Then, paired-end sequencing was performed on an Illumina next-generation sequencer NovaSeq X Plus (Illumina, USA).

Suspension:

Article Title: An ex vivo uterine system captures implantation, embryogenesis, and trophoblast invasion via maternal-embryonic signaling.
Article Snippet: Isolated sampleswere processedusingChromiumNext GEM Single Cell Fixed RNA Sample Preparation Kit (PN-1000414, 10x genomics, USA), and tissue dissociation was performed with Liberase TL (05401020001, Roche, Switzerland) in RPMI1640 (11875093, Thermo Fisher Scientific, USA) using gentleMACS Octo Dissociator with Heaters (Miltenyi Biotech, Germany). .. After cell counting, the single-cell suspension was treated for RNA sequencing library preparation with Chromium Fixed RNA Kit, Mouse Transcriptome (PN1000496, 10x genomics, USA), Chromium Mouse Transcriptome Probe Set v1.0.1 (10x genomics, USA), andChromiumX (10x genomics, USA). .. Then, paired-end sequencing was performed on an Illumina next-generation sequencer NovaSeq X Plus (Illumina, USA).

Article Title: An ex vivo uterine system captures implantation, embryogenesis, and trophoblast invasion via maternal-embryonic signaling
Article Snippet: Isolated samples were processed using Chromium Next GEM Single Cell Fixed RNA Sample Preparation Kit (PN-1000414, 10x genomics, USA), and tissue dissociation was performed with Liberase TL (05401020001, Roche, Switzerland) in RPMI1640 (11875093, Thermo Fisher Scientific, USA) using gentleMACS Octo Dissociator with Heaters (Miltenyi Biotech, Germany). .. After cell counting, the single-cell suspension was treated for RNA sequencing library preparation with Chromium Fixed RNA Kit, Mouse Transcriptome (PN-1000496, 10x genomics, USA), Chromium Mouse Transcriptome Probe Set v1.0.1 (10x genomics, USA), and Chromium X (10x genomics, USA). .. Then, paired-end sequencing was performed on an Illumina next-generation sequencer NovaSeq X Plus (Illumina, USA).

RNA Sequencing:

Article Title: An ex vivo uterine system captures implantation, embryogenesis, and trophoblast invasion via maternal-embryonic signaling.
Article Snippet: Isolated sampleswere processedusingChromiumNext GEM Single Cell Fixed RNA Sample Preparation Kit (PN-1000414, 10x genomics, USA), and tissue dissociation was performed with Liberase TL (05401020001, Roche, Switzerland) in RPMI1640 (11875093, Thermo Fisher Scientific, USA) using gentleMACS Octo Dissociator with Heaters (Miltenyi Biotech, Germany). .. After cell counting, the single-cell suspension was treated for RNA sequencing library preparation with Chromium Fixed RNA Kit, Mouse Transcriptome (PN1000496, 10x genomics, USA), Chromium Mouse Transcriptome Probe Set v1.0.1 (10x genomics, USA), andChromiumX (10x genomics, USA). .. Then, paired-end sequencing was performed on an Illumina next-generation sequencer NovaSeq X Plus (Illumina, USA).

Article Title: An ex vivo uterine system captures implantation, embryogenesis, and trophoblast invasion via maternal-embryonic signaling
Article Snippet: Isolated samples were processed using Chromium Next GEM Single Cell Fixed RNA Sample Preparation Kit (PN-1000414, 10x genomics, USA), and tissue dissociation was performed with Liberase TL (05401020001, Roche, Switzerland) in RPMI1640 (11875093, Thermo Fisher Scientific, USA) using gentleMACS Octo Dissociator with Heaters (Miltenyi Biotech, Germany). .. After cell counting, the single-cell suspension was treated for RNA sequencing library preparation with Chromium Fixed RNA Kit, Mouse Transcriptome (PN-1000496, 10x genomics, USA), Chromium Mouse Transcriptome Probe Set v1.0.1 (10x genomics, USA), and Chromium X (10x genomics, USA). .. Then, paired-end sequencing was performed on an Illumina next-generation sequencer NovaSeq X Plus (Illumina, USA).



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