mirna expression profile microarrays (CapitalBio Corporation)
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Mirna Expression Profile Microarrays, supplied by CapitalBio Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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1) Product Images from "Gene Expression Profiles of Circular RNAs and MicroRNAs in Chronic Rhinosinusitis With Nasal Polyps"
Article Title: Gene Expression Profiles of Circular RNAs and MicroRNAs in Chronic Rhinosinusitis With Nasal Polyps
Journal: Frontiers in Molecular Biosciences
doi: 10.3389/fmolb.2021.643504
Figure Legend Snippet: Hematoxylin-eosin staining of control, ECRSwNP, and non-ECRSwNP groups, and differential expression of circRNAs and miRNAs in the three groups. (A) Representative images of hematoxylin-eosin staining. The scale bar represents 100 μm. (B) Hierarchical clustering analysis heat map showing significantly changed of circRNAs and (C) of miRNAs with fold change ≥2.0 ( p < 0.05) in the three groups (ECRSwNP, non-ECRSwNP, and control). The expressions of circRNAs and miRNAs were significantly different between CRSwNP and control groups, but ECRSwNP and non-ECRSwNP groups shared similar gene expression profiles. Then, they were combined as the CRSwNP group. Hierarchical clustering analysis heat map showing significantly changed of circRNAs (D) and of miRNAs (E) with fold change ≥2.0 ( p < 0.05) in the two groups (CRSwNP and control).
Techniques Used: Staining, Control, Quantitative Proteomics, Gene Expression
Figure Legend Snippet: Different expressions of circRNAs and miRNAs shown in volcano plots. The circRNAs and miRNAs were widely distributed in all chromosomes. Each column corresponds to a circRNA or a miRNA, the green column toward the center represents significantly downregulated and the red one toward the outside means upregulated. (A) Differential expression of circRNAs. (B) Differential expression of miRNAs.
Techniques Used: Quantitative Proteomics
Figure Legend Snippet: Top 40 circRNA-miRNA co-expression networks. Co-expression networks were analyzed by miRanda-3.3 software, combined with entropy values below 20. Stars represent circRNAs; squares represent miRNA; lines represent correlative relationships. Different sizes and colors represent the corresponding (up/down) relationship.
Techniques Used: Expressing, Software
Figure Legend Snippet: Top 10 significant enriched GO terms analysis of miRNAs. Differentially expressed miRNAs were mainly involved in biological process, cellular component, and molecular function. Compared with the normal subjects, the significantly over-presented miRNAs in the CRSwNP group were mainly involved in positive regulation of biological process, intracellular part, and binding.
Techniques Used: Binding Assay
Figure Legend Snippet: KEGG pathway analysis of circRNAs and miRNAs. Biological roles of the differentially expressed circRNAs (A) and miRNAs (B) . Biological roles of the differentially expressed circRNAs include amebiasis, salivary secretion, cell adhesion molecules (CAMs), and so on. Biological roles of the differentially expressed miRNAs include pathways in cancer, endocytosis, thyroid hormone signaling pathway, and so on.
Techniques Used:
Figure Legend Snippet: Confirmation of the expression of circRNAs and miRNAs using RNA-sequencing and quantitative real-time polymerase chain reaction (qRT-PCR). CircRNAs and miRNAs were validated by RNA-sequencing (CRSwNP( n = 6); control subjects ( n = 3) (A) ; and qRT-PCR in an independent cohort of five CRSwNP subjects and five control subjects (B) . Each sample was detected in triplicate. GAPDH was used as the reference gene for circRNAs, and hsa-miR-16 was used as the reference gene for miRNAs. The relative expression levels of hsa-circ-0031593, hsa-circ-0031594, hsa-circ-0109623, hsa-circ-0000736, hsa-miR-132-3p, hsa-miR-145-5p, hsa-miR-146a-5p, hsa-miR-125a-5p, and hsa-miR-27b-3p by qRT-PCR. * p < 0.05, ** p < 0.01, *** p < 0.001, **** p < 0.0001.
Techniques Used: Expressing, RNA Sequencing, Real-time Polymerase Chain Reaction, Quantitative RT-PCR, Control
Figure Legend Snippet: Confirmation of the expression of circRNAs and miRNAs using quantitative real-time polymerase chain reaction (qRT-PCR). Sample numbers were expanded to perform qRT-PCR (CRSwNP ( n = 29); control subjects ( n = 25). GAPDH was used as the reference gene for circRNAs, and hsa-miR-16 was used as the reference gene for miRNAs. The heights of columns represent the fold changes of CRSwNP compared with the control group. The relative expression levels of hsa-circ-0031593, hsa-circ-0031594, hsa-circ-0109623, hsa-circ-0000736, hsa-miR-132-3p, hsa-miR-145-5p, hsa-miR-146a-5p, hsa-miR-125a-5p and hsa-miR-27b-3p by qRT-PCR. * p < 0.05, ** p < 0.01, *** p < 0.001, **** p < 0.0001.
Techniques Used: Expressing, Real-time Polymerase Chain Reaction, Quantitative RT-PCR, Control
Figure Legend Snippet: Functional value of circRNAs and miRNAs. The receiver operating characteristic (ROC) curve analysis for the function of CRSwNP. The ROC curve analysis of hsa-circ-0031593, hsa-circ-0031594, hsa-miR-132-3p, hsa-miR-145-5p, hsa-miR-146a-5p, and hsa-miR-27b-3p and principal component 1 of these six ncRNAs for the significance in the occurrence and development of CRSwNP. The AUC (area under curves) values are given on the graphs.
Techniques Used: Functional Assay
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