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microarray snp genotype data  (Illumina Inc)


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    Illumina Inc microarray snp genotype data
    Microarray Snp Genotype Data, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+snp+genotype+data/snp+genotypes/pm40563917-118-13-18
    Average 90 stars, based on 1 article reviews
    microarray snp genotype data - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Control:

    Article Title: SCFD1 expression quantitative trait loci in amyotrophic lateral sclerosis are differentially expressed
    Article Snippet: In parallel to whole genome sequencing, DNA was genotyped using the Infinium HumanOmni 2.5-8 v1.4 array. .. Resulting idat files underwent genotype calling, SNP clustering and quality control via Illumina GenomeStudio 2.0, generating a variant call format (vcf) file with variant quality filter data. ..

    Variant Assay:

    Article Title: SCFD1 expression quantitative trait loci in amyotrophic lateral sclerosis are differentially expressed
    Article Snippet: In parallel to whole genome sequencing, DNA was genotyped using the Infinium HumanOmni 2.5-8 v1.4 array. .. Resulting idat files underwent genotype calling, SNP clustering and quality control via Illumina GenomeStudio 2.0, generating a variant call format (vcf) file with variant quality filter data. ..

    Article Title: AgileMultiIdeogram: Rapid Identification and Visualization of Autozygous Regions Using Illumina Short-Read Sequencing Data.
    Article Snippet: .. AgileMultiIdeogram can detect and visualize autozygous regions within various data types, such as microarray SNP genotype data and Illumina short-read sequencing variant data formatted as either VCF or gVCF files, as well as predetermined regions imported as tab-delimited text files. ..

    Modification:

    Article Title: Prevalence of Autosomal Monosomy and Trisomy Estimated Using Single Nucleotide Polymorphism Genotype Intensity Chip Information in a Large Population of Juvenile Dairy and Beef Cattle.
    Article Snippet: .. Possible cases of autosomal monosomy or trisomy were detected in the present study using the principles proposed by Ryan et al. (2024) to detect sex- chromosome aneuploidy based on the BAF, LRR, and R values using Illumina (Illumina Inc.) SNP genotypes; this approach was modified to detect autosomal aneuploidy using Thermoscientific (Thermo Fisher Scientific Inc.) SNP genotypes. ..

    Article Title: Prevalence of Autosomal Monosomy and Trisomy Estimated Using Single Nucleotide Polymorphism Genotype Intensity Chip Information in a Large Population of Juvenile Dairy and Beef Cattle
    Article Snippet: .. Possible cases of autosomal monosomy or trisomy were detected in the present study using the principles proposed by Ryan et al. ( ) to detect sex‐chromosome aneuploidy based on the BAF, LRR, and R values using Illumina (Illumina Inc.) SNP genotypes; this approach was modified to detect autosomal aneuploidy using Thermoscientific (Thermo Fisher Scientific Inc.) SNP genotypes. ..

    other:

    Article Title: A comparison of univariate, bivariate, and trivariate whole-genome linkage screens of genetically correlated electrophysiological endophenotypes
    Article Snippet: By contrast, using the Illumina SNP-based genotypes we estimated a maximum multipoint LOD score of 3.58 on chromosome 7q at 175 cM.

    Article Title: Whole-Genome Sequencing Data Reveal New Loci Affecting Milk Production in German Black Pied Cattle (DSN)
    Article Snippet: In our previous GWASs for milk production traits in DSN [ ], where the sample size and number of SNP genotypes were smaller (1490 DSN cows, 36K SNPs from Illumina BovineSNP50), we identified 41 significantly associated SNPs located on 17 chromosomes.

    Article Title: A comparison of univariate, bivariate, and trivariate whole-genome linkage screens of genetically correlated electrophysiological endophenotypes
    Article Snippet: Using the Illumina SNP-based genotypes, we estimated a maximum multipoint LOD of 2.55 for TTTH1 and TTTH2 on chromosome 7q, at 140 cM.

    Microarray:

    Article Title: AgileMultiIdeogram: Rapid Identification and Visualization of Autozygous Regions Using Illumina Short-Read Sequencing Data.
    Article Snippet: .. AgileMultiIdeogram can detect and visualize autozygous regions within various data types, such as microarray SNP genotype data and Illumina short-read sequencing variant data formatted as either VCF or gVCF files, as well as predetermined regions imported as tab-delimited text files. ..

    Sequencing:

    Article Title: AgileMultiIdeogram: Rapid Identification and Visualization of Autozygous Regions Using Illumina Short-Read Sequencing Data.
    Article Snippet: .. AgileMultiIdeogram can detect and visualize autozygous regions within various data types, such as microarray SNP genotype data and Illumina short-read sequencing variant data formatted as either VCF or gVCF files, as well as predetermined regions imported as tab-delimited text files. ..



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    Mapping of the CFTR locus in a nonconsanguineous CEPH family (Pedigree 3, see the section Methods), using variant data derived either ( A ) from exome sequencing or ( B ) from microarray SNP genotyping (Affymetrix SNP 6.0). Display of Chromosome 7 haplotypes was performed using Phaser [Carr et al., ]. In this display, blue and pink vertical bars denote the haplotypes inherited by the first affected offspring from the father and mother, respectively. The disease locus must be located in a region where all affected individuals share the same combination of maternal (pink) and paternal (blue) haplotypes as this first individual. This is denoted by a purple color in the central vertical bar (region of overlap between the affected paternal and maternal haplotypes). Unaffected offspring should be discordant with their affected siblings at the disease locus (i.e., no purple bar). In this example, the actual position of the CFTR gene is marked by a horizontal red line. It can be seen that the candidate region containing CFTR is considerably smaller in ( B ), due to the superior resolution and distribution of the microarray SNPs.
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    Mapping of the CFTR locus in a nonconsanguineous CEPH family (Pedigree 3, see the section Methods), using variant data derived either ( A ) from exome sequencing or ( B ) from microarray SNP genotyping (Affymetrix SNP 6.0). Display of Chromosome 7 haplotypes was performed using Phaser [Carr et al., ]. In this display, blue and pink vertical bars denote the haplotypes inherited by the first affected offspring from the father and mother, respectively. The disease locus must be located in a region where all affected individuals share the same combination of maternal (pink) and paternal (blue) haplotypes as this first individual. This is denoted by a purple color in the central vertical bar (region of overlap between the affected paternal and maternal haplotypes). Unaffected offspring should be discordant with their affected siblings at the disease locus (i.e., no purple bar). In this example, the actual position of the CFTR gene is marked by a horizontal red line. It can be seen that the candidate region containing CFTR is considerably smaller in ( B ), due to the superior resolution and distribution of the microarray SNPs.

    Journal: Human Mutation

    Article Title: Rapid Detection of Rare Deleterious Variants by Next Generation Sequencing with Optional Microarray SNP Genotype Data

    doi: 10.1002/humu.22818

    Figure Lengend Snippet: Mapping of the CFTR locus in a nonconsanguineous CEPH family (Pedigree 3, see the section Methods), using variant data derived either ( A ) from exome sequencing or ( B ) from microarray SNP genotyping (Affymetrix SNP 6.0). Display of Chromosome 7 haplotypes was performed using Phaser [Carr et al., ]. In this display, blue and pink vertical bars denote the haplotypes inherited by the first affected offspring from the father and mother, respectively. The disease locus must be located in a region where all affected individuals share the same combination of maternal (pink) and paternal (blue) haplotypes as this first individual. This is denoted by a purple color in the central vertical bar (region of overlap between the affected paternal and maternal haplotypes). Unaffected offspring should be discordant with their affected siblings at the disease locus (i.e., no purple bar). In this example, the actual position of the CFTR gene is marked by a horizontal red line. It can be seen that the candidate region containing CFTR is considerably smaller in ( B ), due to the superior resolution and distribution of the microarray SNPs.

    Article Snippet: Exome variant data were only available for two affected siblings, while Affymetrix SNP 6.0 microarray SNP genotype data were available for a third affected sibling and two unaffected siblings.

    Techniques: Variant Assay, Derivative Assay, Sequencing, Microarray