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‘one-color microarray-based gene expression analysis’ protocol version 6.0  (Agilent technologies)


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    Agilent technologies ‘one-color microarray-based gene expression analysis’ protocol version 6.0
    ‘One Color Microarray Based Gene Expression Analysis’ Protocol Version 6.0, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+protocols/pmc03482228-198-1-9
    Average 90 stars, based on 1 article reviews
    ‘one-color microarray-based gene expression analysis’ protocol version 6.0 - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Hybridization:

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: In order to further delineate how clopidogrel could induce GES-1 cell apoptosis, we used an extensively recognized Agilent one-color microarray-based gene expression technique to measure altered mRNA expression in clopidogrel-treated gastric epithelial cells as compared with vehicle-treated cells and confirmed several most important genes involved.

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: To better understand cellular responses to clopidogrel and potential signaling pathways activated by clopidogrel, the differentially expressed genes were determined in the absence or presence of clopidogrel treatment by the Agilent one-color microarray-based gene expression profiling.

    Article Title: Intratracheal Transplantation of Amnion-Derived Mesenchymal Stem Cells Ameliorates Hyperoxia-Induced Neonatal Hyperoxic Lung Injury via Aminoacyl-Peptide Hydrolase
    Article Snippet: The amount of formazan formed was calculated in absorbance measurements at 560 nm (Pharmacia Biotech) and was expressed in U/mL.

    Article Title: Identification of Novel Low-Dose Bisphenol A Targets in Human Foreskin Fibroblast Cells Derived from Hypospadias Patients
    Article Snippet: RNA was amplified into cRNA and labeled according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technologies).

    Article Title: Development and validation of a gene expression oligo microarray for the gilthead sea bream ( Sparus aurata )
    Article Snippet: Sample labelling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol; more details of the followed procedure can be found in Additional file .

    Article Title: Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping
    Article Snippet: Sample preparation, hybridization, wash, scanning and feature extraction was performed according to the standard protocol, 'One-Color Microarray-Based Gene Expression Analysis v.5.7 (P/N G4140-90040)', by Agilent Technologies.

    Article Title: Comparison of host cell gene expression in cowpox, monkeypox or vaccinia virus-infected cells reveals virus-specific regulation of immune response genes
    Article Snippet: Sample labelling was performed as detailed in the Agilent “One-Color Microarray-Based Gene Expression Analysis” protocol (version 5.7, part number G4140-90040).

    Article Title: Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
    Article Snippet: Sample labeling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol.

    Microarray:

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: In order to further delineate how clopidogrel could induce GES-1 cell apoptosis, we used an extensively recognized Agilent one-color microarray-based gene expression technique to measure altered mRNA expression in clopidogrel-treated gastric epithelial cells as compared with vehicle-treated cells and confirmed several most important genes involved.

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: To better understand cellular responses to clopidogrel and potential signaling pathways activated by clopidogrel, the differentially expressed genes were determined in the absence or presence of clopidogrel treatment by the Agilent one-color microarray-based gene expression profiling.

    Article Title: Intratracheal Transplantation of Amnion-Derived Mesenchymal Stem Cells Ameliorates Hyperoxia-Induced Neonatal Hyperoxic Lung Injury via Aminoacyl-Peptide Hydrolase
    Article Snippet: The amount of formazan formed was calculated in absorbance measurements at 560 nm (Pharmacia Biotech) and was expressed in U/mL.

    Article Title: Identification of Novel Low-Dose Bisphenol A Targets in Human Foreskin Fibroblast Cells Derived from Hypospadias Patients
    Article Snippet: RNA was amplified into cRNA and labeled according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technologies).

    Article Title: Development and validation of a gene expression oligo microarray for the gilthead sea bream ( Sparus aurata )
    Article Snippet: Sample labelling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol; more details of the followed procedure can be found in Additional file .

    Article Title: Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping
    Article Snippet: Sample preparation, hybridization, wash, scanning and feature extraction was performed according to the standard protocol, 'One-Color Microarray-Based Gene Expression Analysis v.5.7 (P/N G4140-90040)', by Agilent Technologies.

    Article Title: Comparison of host cell gene expression in cowpox, monkeypox or vaccinia virus-infected cells reveals virus-specific regulation of immune response genes
    Article Snippet: Sample labelling was performed as detailed in the Agilent “One-Color Microarray-Based Gene Expression Analysis” protocol (version 5.7, part number G4140-90040).

    Article Title: Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
    Article Snippet: Sample labeling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol.

    Expressing:

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: In order to further delineate how clopidogrel could induce GES-1 cell apoptosis, we used an extensively recognized Agilent one-color microarray-based gene expression technique to measure altered mRNA expression in clopidogrel-treated gastric epithelial cells as compared with vehicle-treated cells and confirmed several most important genes involved.

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: To better understand cellular responses to clopidogrel and potential signaling pathways activated by clopidogrel, the differentially expressed genes were determined in the absence or presence of clopidogrel treatment by the Agilent one-color microarray-based gene expression profiling.

    Article Title: Intratracheal Transplantation of Amnion-Derived Mesenchymal Stem Cells Ameliorates Hyperoxia-Induced Neonatal Hyperoxic Lung Injury via Aminoacyl-Peptide Hydrolase
    Article Snippet: The amount of formazan formed was calculated in absorbance measurements at 560 nm (Pharmacia Biotech) and was expressed in U/mL.

    Article Title: Identification of Novel Low-Dose Bisphenol A Targets in Human Foreskin Fibroblast Cells Derived from Hypospadias Patients
    Article Snippet: RNA was amplified into cRNA and labeled according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technologies).

    Article Title: Development and validation of a gene expression oligo microarray for the gilthead sea bream ( Sparus aurata )
    Article Snippet: Sample labelling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol; more details of the followed procedure can be found in Additional file .

    Article Title: Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping
    Article Snippet: Sample preparation, hybridization, wash, scanning and feature extraction was performed according to the standard protocol, 'One-Color Microarray-Based Gene Expression Analysis v.5.7 (P/N G4140-90040)', by Agilent Technologies.

    Article Title: Comparison of host cell gene expression in cowpox, monkeypox or vaccinia virus-infected cells reveals virus-specific regulation of immune response genes
    Article Snippet: Sample labelling was performed as detailed in the Agilent “One-Color Microarray-Based Gene Expression Analysis” protocol (version 5.7, part number G4140-90040).

    Article Title: Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
    Article Snippet: Sample labeling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol.

    Quantitative RT-PCR:

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: In order to further delineate how clopidogrel could induce GES-1 cell apoptosis, we used an extensively recognized Agilent one-color microarray-based gene expression technique to measure altered mRNA expression in clopidogrel-treated gastric epithelial cells as compared with vehicle-treated cells and confirmed several most important genes involved.

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: To better understand cellular responses to clopidogrel and potential signaling pathways activated by clopidogrel, the differentially expressed genes were determined in the absence or presence of clopidogrel treatment by the Agilent one-color microarray-based gene expression profiling.

    Article Title: Intratracheal Transplantation of Amnion-Derived Mesenchymal Stem Cells Ameliorates Hyperoxia-Induced Neonatal Hyperoxic Lung Injury via Aminoacyl-Peptide Hydrolase
    Article Snippet: The amount of formazan formed was calculated in absorbance measurements at 560 nm (Pharmacia Biotech) and was expressed in U/mL.

    Article Title: Identification of Novel Low-Dose Bisphenol A Targets in Human Foreskin Fibroblast Cells Derived from Hypospadias Patients
    Article Snippet: RNA was amplified into cRNA and labeled according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technologies).

    Article Title: Development and validation of a gene expression oligo microarray for the gilthead sea bream ( Sparus aurata )
    Article Snippet: Sample labelling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol; more details of the followed procedure can be found in Additional file .

    Article Title: Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping
    Article Snippet: Sample preparation, hybridization, wash, scanning and feature extraction was performed according to the standard protocol, 'One-Color Microarray-Based Gene Expression Analysis v.5.7 (P/N G4140-90040)', by Agilent Technologies.

    Article Title: Comparison of host cell gene expression in cowpox, monkeypox or vaccinia virus-infected cells reveals virus-specific regulation of immune response genes
    Article Snippet: Sample labelling was performed as detailed in the Agilent “One-Color Microarray-Based Gene Expression Analysis” protocol (version 5.7, part number G4140-90040).

    Article Title: Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
    Article Snippet: Sample labeling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol.

    Labeling:

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: In order to further delineate how clopidogrel could induce GES-1 cell apoptosis, we used an extensively recognized Agilent one-color microarray-based gene expression technique to measure altered mRNA expression in clopidogrel-treated gastric epithelial cells as compared with vehicle-treated cells and confirmed several most important genes involved.

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: To better understand cellular responses to clopidogrel and potential signaling pathways activated by clopidogrel, the differentially expressed genes were determined in the absence or presence of clopidogrel treatment by the Agilent one-color microarray-based gene expression profiling.

    Article Title: Intratracheal Transplantation of Amnion-Derived Mesenchymal Stem Cells Ameliorates Hyperoxia-Induced Neonatal Hyperoxic Lung Injury via Aminoacyl-Peptide Hydrolase
    Article Snippet: The amount of formazan formed was calculated in absorbance measurements at 560 nm (Pharmacia Biotech) and was expressed in U/mL.

    Article Title: Identification of Novel Low-Dose Bisphenol A Targets in Human Foreskin Fibroblast Cells Derived from Hypospadias Patients
    Article Snippet: RNA was amplified into cRNA and labeled according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technologies).

    Article Title: Development and validation of a gene expression oligo microarray for the gilthead sea bream ( Sparus aurata )
    Article Snippet: Sample labelling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol; more details of the followed procedure can be found in Additional file .

    Article Title: Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping
    Article Snippet: Sample preparation, hybridization, wash, scanning and feature extraction was performed according to the standard protocol, 'One-Color Microarray-Based Gene Expression Analysis v.5.7 (P/N G4140-90040)', by Agilent Technologies.

    Article Title: Comparison of host cell gene expression in cowpox, monkeypox or vaccinia virus-infected cells reveals virus-specific regulation of immune response genes
    Article Snippet: Sample labelling was performed as detailed in the Agilent “One-Color Microarray-Based Gene Expression Analysis” protocol (version 5.7, part number G4140-90040).

    Article Title: Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
    Article Snippet: Sample labeling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol.

    Infection:

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: In order to further delineate how clopidogrel could induce GES-1 cell apoptosis, we used an extensively recognized Agilent one-color microarray-based gene expression technique to measure altered mRNA expression in clopidogrel-treated gastric epithelial cells as compared with vehicle-treated cells and confirmed several most important genes involved.

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: To better understand cellular responses to clopidogrel and potential signaling pathways activated by clopidogrel, the differentially expressed genes were determined in the absence or presence of clopidogrel treatment by the Agilent one-color microarray-based gene expression profiling.

    Article Title: Intratracheal Transplantation of Amnion-Derived Mesenchymal Stem Cells Ameliorates Hyperoxia-Induced Neonatal Hyperoxic Lung Injury via Aminoacyl-Peptide Hydrolase
    Article Snippet: The amount of formazan formed was calculated in absorbance measurements at 560 nm (Pharmacia Biotech) and was expressed in U/mL.

    Article Title: Identification of Novel Low-Dose Bisphenol A Targets in Human Foreskin Fibroblast Cells Derived from Hypospadias Patients
    Article Snippet: RNA was amplified into cRNA and labeled according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technologies).

    Article Title: Development and validation of a gene expression oligo microarray for the gilthead sea bream ( Sparus aurata )
    Article Snippet: Sample labelling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol; more details of the followed procedure can be found in Additional file .

    Article Title: Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping
    Article Snippet: Sample preparation, hybridization, wash, scanning and feature extraction was performed according to the standard protocol, 'One-Color Microarray-Based Gene Expression Analysis v.5.7 (P/N G4140-90040)', by Agilent Technologies.

    Article Title: Comparison of host cell gene expression in cowpox, monkeypox or vaccinia virus-infected cells reveals virus-specific regulation of immune response genes
    Article Snippet: Sample labelling was performed as detailed in the Agilent “One-Color Microarray-Based Gene Expression Analysis” protocol (version 5.7, part number G4140-90040).

    Article Title: Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
    Article Snippet: Sample labeling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol.

    Binding Assay:

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: In order to further delineate how clopidogrel could induce GES-1 cell apoptosis, we used an extensively recognized Agilent one-color microarray-based gene expression technique to measure altered mRNA expression in clopidogrel-treated gastric epithelial cells as compared with vehicle-treated cells and confirmed several most important genes involved.

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: To better understand cellular responses to clopidogrel and potential signaling pathways activated by clopidogrel, the differentially expressed genes were determined in the absence or presence of clopidogrel treatment by the Agilent one-color microarray-based gene expression profiling.

    Article Title: Intratracheal Transplantation of Amnion-Derived Mesenchymal Stem Cells Ameliorates Hyperoxia-Induced Neonatal Hyperoxic Lung Injury via Aminoacyl-Peptide Hydrolase
    Article Snippet: The amount of formazan formed was calculated in absorbance measurements at 560 nm (Pharmacia Biotech) and was expressed in U/mL.

    Article Title: Identification of Novel Low-Dose Bisphenol A Targets in Human Foreskin Fibroblast Cells Derived from Hypospadias Patients
    Article Snippet: RNA was amplified into cRNA and labeled according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technologies).

    Article Title: Development and validation of a gene expression oligo microarray for the gilthead sea bream ( Sparus aurata )
    Article Snippet: Sample labelling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol; more details of the followed procedure can be found in Additional file .

    Article Title: Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping
    Article Snippet: Sample preparation, hybridization, wash, scanning and feature extraction was performed according to the standard protocol, 'One-Color Microarray-Based Gene Expression Analysis v.5.7 (P/N G4140-90040)', by Agilent Technologies.

    Article Title: Comparison of host cell gene expression in cowpox, monkeypox or vaccinia virus-infected cells reveals virus-specific regulation of immune response genes
    Article Snippet: Sample labelling was performed as detailed in the Agilent “One-Color Microarray-Based Gene Expression Analysis” protocol (version 5.7, part number G4140-90040).

    Article Title: Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
    Article Snippet: Sample labeling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol.

    Amplification:

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: In order to further delineate how clopidogrel could induce GES-1 cell apoptosis, we used an extensively recognized Agilent one-color microarray-based gene expression technique to measure altered mRNA expression in clopidogrel-treated gastric epithelial cells as compared with vehicle-treated cells and confirmed several most important genes involved.

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: To better understand cellular responses to clopidogrel and potential signaling pathways activated by clopidogrel, the differentially expressed genes were determined in the absence or presence of clopidogrel treatment by the Agilent one-color microarray-based gene expression profiling.

    Article Title: Intratracheal Transplantation of Amnion-Derived Mesenchymal Stem Cells Ameliorates Hyperoxia-Induced Neonatal Hyperoxic Lung Injury via Aminoacyl-Peptide Hydrolase
    Article Snippet: The amount of formazan formed was calculated in absorbance measurements at 560 nm (Pharmacia Biotech) and was expressed in U/mL.

    Article Title: Identification of Novel Low-Dose Bisphenol A Targets in Human Foreskin Fibroblast Cells Derived from Hypospadias Patients
    Article Snippet: RNA was amplified into cRNA and labeled according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technologies).

    Article Title: Development and validation of a gene expression oligo microarray for the gilthead sea bream ( Sparus aurata )
    Article Snippet: Sample labelling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol; more details of the followed procedure can be found in Additional file .

    Article Title: Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping
    Article Snippet: Sample preparation, hybridization, wash, scanning and feature extraction was performed according to the standard protocol, 'One-Color Microarray-Based Gene Expression Analysis v.5.7 (P/N G4140-90040)', by Agilent Technologies.

    Article Title: Comparison of host cell gene expression in cowpox, monkeypox or vaccinia virus-infected cells reveals virus-specific regulation of immune response genes
    Article Snippet: Sample labelling was performed as detailed in the Agilent “One-Color Microarray-Based Gene Expression Analysis” protocol (version 5.7, part number G4140-90040).

    Article Title: Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
    Article Snippet: Sample labeling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol.

    Derivative Assay:

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: In order to further delineate how clopidogrel could induce GES-1 cell apoptosis, we used an extensively recognized Agilent one-color microarray-based gene expression technique to measure altered mRNA expression in clopidogrel-treated gastric epithelial cells as compared with vehicle-treated cells and confirmed several most important genes involved.

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: To better understand cellular responses to clopidogrel and potential signaling pathways activated by clopidogrel, the differentially expressed genes were determined in the absence or presence of clopidogrel treatment by the Agilent one-color microarray-based gene expression profiling.

    Article Title: Intratracheal Transplantation of Amnion-Derived Mesenchymal Stem Cells Ameliorates Hyperoxia-Induced Neonatal Hyperoxic Lung Injury via Aminoacyl-Peptide Hydrolase
    Article Snippet: The amount of formazan formed was calculated in absorbance measurements at 560 nm (Pharmacia Biotech) and was expressed in U/mL.

    Article Title: Identification of Novel Low-Dose Bisphenol A Targets in Human Foreskin Fibroblast Cells Derived from Hypospadias Patients
    Article Snippet: RNA was amplified into cRNA and labeled according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technologies).

    Article Title: Development and validation of a gene expression oligo microarray for the gilthead sea bream ( Sparus aurata )
    Article Snippet: Sample labelling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol; more details of the followed procedure can be found in Additional file .

    Article Title: Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping
    Article Snippet: Sample preparation, hybridization, wash, scanning and feature extraction was performed according to the standard protocol, 'One-Color Microarray-Based Gene Expression Analysis v.5.7 (P/N G4140-90040)', by Agilent Technologies.

    Article Title: Comparison of host cell gene expression in cowpox, monkeypox or vaccinia virus-infected cells reveals virus-specific regulation of immune response genes
    Article Snippet: Sample labelling was performed as detailed in the Agilent “One-Color Microarray-Based Gene Expression Analysis” protocol (version 5.7, part number G4140-90040).

    Article Title: Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
    Article Snippet: Sample labeling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol.

    Variant Assay:

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: In order to further delineate how clopidogrel could induce GES-1 cell apoptosis, we used an extensively recognized Agilent one-color microarray-based gene expression technique to measure altered mRNA expression in clopidogrel-treated gastric epithelial cells as compared with vehicle-treated cells and confirmed several most important genes involved.

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: To better understand cellular responses to clopidogrel and potential signaling pathways activated by clopidogrel, the differentially expressed genes were determined in the absence or presence of clopidogrel treatment by the Agilent one-color microarray-based gene expression profiling.

    Article Title: Intratracheal Transplantation of Amnion-Derived Mesenchymal Stem Cells Ameliorates Hyperoxia-Induced Neonatal Hyperoxic Lung Injury via Aminoacyl-Peptide Hydrolase
    Article Snippet: The amount of formazan formed was calculated in absorbance measurements at 560 nm (Pharmacia Biotech) and was expressed in U/mL.

    Article Title: Identification of Novel Low-Dose Bisphenol A Targets in Human Foreskin Fibroblast Cells Derived from Hypospadias Patients
    Article Snippet: RNA was amplified into cRNA and labeled according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technologies).

    Article Title: Development and validation of a gene expression oligo microarray for the gilthead sea bream ( Sparus aurata )
    Article Snippet: Sample labelling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol; more details of the followed procedure can be found in Additional file .

    Article Title: Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping
    Article Snippet: Sample preparation, hybridization, wash, scanning and feature extraction was performed according to the standard protocol, 'One-Color Microarray-Based Gene Expression Analysis v.5.7 (P/N G4140-90040)', by Agilent Technologies.

    Article Title: Comparison of host cell gene expression in cowpox, monkeypox or vaccinia virus-infected cells reveals virus-specific regulation of immune response genes
    Article Snippet: Sample labelling was performed as detailed in the Agilent “One-Color Microarray-Based Gene Expression Analysis” protocol (version 5.7, part number G4140-90040).

    Article Title: Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
    Article Snippet: Sample labeling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol.

    Sample Prep:

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: In order to further delineate how clopidogrel could induce GES-1 cell apoptosis, we used an extensively recognized Agilent one-color microarray-based gene expression technique to measure altered mRNA expression in clopidogrel-treated gastric epithelial cells as compared with vehicle-treated cells and confirmed several most important genes involved.

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: To better understand cellular responses to clopidogrel and potential signaling pathways activated by clopidogrel, the differentially expressed genes were determined in the absence or presence of clopidogrel treatment by the Agilent one-color microarray-based gene expression profiling.

    Article Title: Intratracheal Transplantation of Amnion-Derived Mesenchymal Stem Cells Ameliorates Hyperoxia-Induced Neonatal Hyperoxic Lung Injury via Aminoacyl-Peptide Hydrolase
    Article Snippet: The amount of formazan formed was calculated in absorbance measurements at 560 nm (Pharmacia Biotech) and was expressed in U/mL.

    Article Title: Identification of Novel Low-Dose Bisphenol A Targets in Human Foreskin Fibroblast Cells Derived from Hypospadias Patients
    Article Snippet: RNA was amplified into cRNA and labeled according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technologies).

    Article Title: Development and validation of a gene expression oligo microarray for the gilthead sea bream ( Sparus aurata )
    Article Snippet: Sample labelling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol; more details of the followed procedure can be found in Additional file .

    Article Title: Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping
    Article Snippet: Sample preparation, hybridization, wash, scanning and feature extraction was performed according to the standard protocol, 'One-Color Microarray-Based Gene Expression Analysis v.5.7 (P/N G4140-90040)', by Agilent Technologies.

    Article Title: Comparison of host cell gene expression in cowpox, monkeypox or vaccinia virus-infected cells reveals virus-specific regulation of immune response genes
    Article Snippet: Sample labelling was performed as detailed in the Agilent “One-Color Microarray-Based Gene Expression Analysis” protocol (version 5.7, part number G4140-90040).

    Article Title: Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
    Article Snippet: Sample labeling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol.



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    Comparison of mRNA expression in seven candidate genes between TPCH test (n = 30, <t>microarray)</t> and training set (n = 62 qRT-PCR data), with two public microarray datasets of lung tissue samples (Spira et al , , n = 34; and Golpon et al , n = 10) . Fold change represents mean expression ratio of moderate versus mild emphysema (TPCH training set), severe/mild emphysema versus normal (Spira et al ), or severe emphysema versus normal samples (Golpon et al ). The absence of a bar indicates the gene was not represented on the microarray platform.
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    Significant genes of each signature were represented according to their gene function and specific role in the cell, localization and type of interaction between them. Node border color refers to cell localization, node shape to general function and node color to specific function in the cell. Edge color refers to physical interactions, biochemical interactions or to both; when not specified, a functional interaction is assumed. Upstream arrow (red) means up-regulation versus the other categories, and downstream arrow (blue) means down-regulation versus the other categories. <t>Microarray</t> data values represented here are shown in and .
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    <t>Microarray</t> analysis of hUCB-MSCs from the normal and preeclampsia groups. (a) The scatter plot and MA plot show the DEGs between N3 and P3 cells. In the scatter plot, the median line indicates no difference in signal intensity between the two groups. The upper gray line indicates a twofold higher signal intensity, and the lower gray line indicates a twofold lower signal intensity for hUCB-MSCs from the preeclampsia group as compared to the normal group. In the MA plot, the median line represents N signal/P signal = 1. The upper gray line represents N signal/P signal = 2, and the lower gray line represents N signal/P signal = 0.5. N3: hUCB-MSCs at passage 3, normal pregnancy; P3: hUCB-MSCs at passage 3, preeclampsia. (b, c) Hierarchical cluster analysis of differentially expressed genes (DEGs) between N3 and P3 cells. Red represents upregulated gene clusters, and green represents downregulated gene clusters. The panels show genes up- or downregulated twofold (b) or fourfold (c) in P3 (versus N3) cells. N3: hUCB-MSCs at passage 3, normal pregnancy; P3: early hUCB-MSCs at passage 3, preeclampsia.
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    <t>Microarray</t> analysis of hUCB-MSCs from the normal and preeclampsia groups. (a) The scatter plot and MA plot show the DEGs between N3 and P3 cells. In the scatter plot, the median line indicates no difference in signal intensity between the two groups. The upper gray line indicates a twofold higher signal intensity, and the lower gray line indicates a twofold lower signal intensity for hUCB-MSCs from the preeclampsia group as compared to the normal group. In the MA plot, the median line represents N signal/P signal = 1. The upper gray line represents N signal/P signal = 2, and the lower gray line represents N signal/P signal = 0.5. N3: hUCB-MSCs at passage 3, normal pregnancy; P3: hUCB-MSCs at passage 3, preeclampsia. (b, c) Hierarchical cluster analysis of differentially expressed genes (DEGs) between N3 and P3 cells. Red represents upregulated gene clusters, and green represents downregulated gene clusters. The panels show genes up- or downregulated twofold (b) or fourfold (c) in P3 (versus N3) cells. N3: hUCB-MSCs at passage 3, normal pregnancy; P3: early hUCB-MSCs at passage 3, preeclampsia.
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    Image Search Results


    Comparison of mRNA expression in seven candidate genes between TPCH test (n = 30, microarray) and training set (n = 62 qRT-PCR data), with two public microarray datasets of lung tissue samples (Spira et al , , n = 34; and Golpon et al , n = 10) . Fold change represents mean expression ratio of moderate versus mild emphysema (TPCH training set), severe/mild emphysema versus normal (Spira et al ), or severe emphysema versus normal samples (Golpon et al ). The absence of a bar indicates the gene was not represented on the microarray platform.

    Journal: Respiratory Research

    Article Title: Expression profiling identifies genes involved in emphysema severity

    doi: 10.1186/1465-9921-10-81

    Figure Lengend Snippet: Comparison of mRNA expression in seven candidate genes between TPCH test (n = 30, microarray) and training set (n = 62 qRT-PCR data), with two public microarray datasets of lung tissue samples (Spira et al , , n = 34; and Golpon et al , n = 10) . Fold change represents mean expression ratio of moderate versus mild emphysema (TPCH training set), severe/mild emphysema versus normal (Spira et al ), or severe emphysema versus normal samples (Golpon et al ). The absence of a bar indicates the gene was not represented on the microarray platform.

    Article Snippet: Lung and universal reference RNA (Stratagene, La Jolla, CA, USA) was reverse transcribed, labeled with Cy5 and Cy3 (Amersham/GE Healthcare, Buckinghamshire, England) respectively and co-hybridized onto a 22K Operon V2.1 Human Genome Oligo Microarray chip http://www.operon.com containing 21,329 70 mer probes representing ~14,200 named transcripts printed by the British Columbia Gene Array Facility http://www.microarray.prostatecentre.com .

    Techniques: Expressing, Microarray, Quantitative RT-PCR

    Significant genes of each signature were represented according to their gene function and specific role in the cell, localization and type of interaction between them. Node border color refers to cell localization, node shape to general function and node color to specific function in the cell. Edge color refers to physical interactions, biochemical interactions or to both; when not specified, a functional interaction is assumed. Upstream arrow (red) means up-regulation versus the other categories, and downstream arrow (blue) means down-regulation versus the other categories. Microarray data values represented here are shown in and .

    Journal: PLoS ONE

    Article Title: Defining the Genomic Signature of Totipotency and Pluripotency during Early Human Development

    doi: 10.1371/journal.pone.0062135

    Figure Lengend Snippet: Significant genes of each signature were represented according to their gene function and specific role in the cell, localization and type of interaction between them. Node border color refers to cell localization, node shape to general function and node color to specific function in the cell. Edge color refers to physical interactions, biochemical interactions or to both; when not specified, a functional interaction is assumed. Upstream arrow (red) means up-regulation versus the other categories, and downstream arrow (blue) means down-regulation versus the other categories. Microarray data values represented here are shown in and .

    Article Snippet: Following ‘One-Color Microarray-Based Gene Expression Analysis’ protocol Version 5.7 (Agilent p/n G4140-90040), 3 µg of labelled cRNA was hybridised with the Whole Human Genome Oligo Microarray Kit (Agilent p/n G2519F-014850) containing 41,000+ unique human genes and transcripts.

    Techniques: Functional Assay, Microarray

    Microarray analysis of hUCB-MSCs from the normal and preeclampsia groups. (a) The scatter plot and MA plot show the DEGs between N3 and P3 cells. In the scatter plot, the median line indicates no difference in signal intensity between the two groups. The upper gray line indicates a twofold higher signal intensity, and the lower gray line indicates a twofold lower signal intensity for hUCB-MSCs from the preeclampsia group as compared to the normal group. In the MA plot, the median line represents N signal/P signal = 1. The upper gray line represents N signal/P signal = 2, and the lower gray line represents N signal/P signal = 0.5. N3: hUCB-MSCs at passage 3, normal pregnancy; P3: hUCB-MSCs at passage 3, preeclampsia. (b, c) Hierarchical cluster analysis of differentially expressed genes (DEGs) between N3 and P3 cells. Red represents upregulated gene clusters, and green represents downregulated gene clusters. The panels show genes up- or downregulated twofold (b) or fourfold (c) in P3 (versus N3) cells. N3: hUCB-MSCs at passage 3, normal pregnancy; P3: early hUCB-MSCs at passage 3, preeclampsia.

    Journal: Stem Cells International

    Article Title: Comparative Analysis of Human Umbilical Cord Blood-Derived Mesenchymal Stem Cells between Preeclampsia and Normal Pregnant Women

    doi: 10.1155/2020/8403192

    Figure Lengend Snippet: Microarray analysis of hUCB-MSCs from the normal and preeclampsia groups. (a) The scatter plot and MA plot show the DEGs between N3 and P3 cells. In the scatter plot, the median line indicates no difference in signal intensity between the two groups. The upper gray line indicates a twofold higher signal intensity, and the lower gray line indicates a twofold lower signal intensity for hUCB-MSCs from the preeclampsia group as compared to the normal group. In the MA plot, the median line represents N signal/P signal = 1. The upper gray line represents N signal/P signal = 2, and the lower gray line represents N signal/P signal = 0.5. N3: hUCB-MSCs at passage 3, normal pregnancy; P3: hUCB-MSCs at passage 3, preeclampsia. (b, c) Hierarchical cluster analysis of differentially expressed genes (DEGs) between N3 and P3 cells. Red represents upregulated gene clusters, and green represents downregulated gene clusters. The panels show genes up- or downregulated twofold (b) or fourfold (c) in P3 (versus N3) cells. N3: hUCB-MSCs at passage 3, normal pregnancy; P3: early hUCB-MSCs at passage 3, preeclampsia.

    Article Snippet: The standard protocol used for sample preparation and microarray processing is available from Agilent Technologies.

    Techniques: Microarray

    Network analysis of senescence-related differentially expressed genes (DEGs). Genes represented by a large circle are senescence-related differentially expressed genes (DEGs) obtained from microarray analysis. Red ones are genes related with senescence as well as cell aging. FDR: false discovery rate.

    Journal: Stem Cells International

    Article Title: Comparative Analysis of Human Umbilical Cord Blood-Derived Mesenchymal Stem Cells between Preeclampsia and Normal Pregnant Women

    doi: 10.1155/2020/8403192

    Figure Lengend Snippet: Network analysis of senescence-related differentially expressed genes (DEGs). Genes represented by a large circle are senescence-related differentially expressed genes (DEGs) obtained from microarray analysis. Red ones are genes related with senescence as well as cell aging. FDR: false discovery rate.

    Article Snippet: The standard protocol used for sample preparation and microarray processing is available from Agilent Technologies.

    Techniques: Microarray