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van't veer microarray data set nki295  (Rosetta Inpharmatics)

 
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    Rosetta Inpharmatics van't veer microarray data set nki295
    Van't Veer Microarray Data Set Nki295, supplied by Rosetta Inpharmatics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+dataset/van+t+veer+microarray+dataset/pmc03146366-292-13-18
    Average 90 stars, based on 1 article reviews
    van't veer microarray data set nki295 - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: Delineating transcriptional networks of prognostic gene signatures refines treatment recommendations for lymph node-negative breast cancer patients.
    Article Snippet: The processed publicly available breast cancer microarray 3468 FEBS Journal 282 (2015) 3455–3473 a 2015 FEBS datasets were downloaded from Rosetta Inpharmatics [11] and GEO (GSE6532 and GSE3494) [21,23].

    Microarray:

    Article Title: Breast Tumor Kinase (Brk/PTK6) Is a Mediator of Hypoxia-Associated Breast Cancer Progression
    Article Snippet: For immunofluorescence staining, FFPE sections (5–7mm)were antigen retrieved using 1 citrate buffer, stained with Sik primary antibody (sc-916) at 1:50 dilution overnight at room temperature, followed by Alexa Flour-594 (Invitrogen) secondary and mounted with VECTASHIELD (Vector Laboratories, Inc.). .. Survival analysis was conducted using the van't Veer microarray dataset downloaded from Rosetta Inpharmatics (http:// bioinformatics.nki.nl/data/van-t-Veer_Nature_2002/). ..

    Article Title: Method of predicting risk of recurrence of cancer
    Article Snippet: .. Publicly available breast cancer microarray datasets were downloaded from Rosetta Inpharmatics and Gene Expression Omnibus (GSE6532 and GSE3494). ..

    Article Title: Breast Tumor Kinase (Brk/PTK6) Is a Mediator of Hypoxia-Associated Breast Cancer Progression
    Article Snippet: .. Correction: Breast Tumor Kinase (Brk/PTK6) Is a Mediator of Hypoxia-Associated Breast Cancer Progression In this article (Cancer Res 2013;73:5810–20), which was published in the September 15, 2013, issue ofCancer Research (1), theURLon page 5812 is incorrect; the sentence should read as follows: Survival analysis was conducted using the van't Veer microarray dataset downloaded from Rosetta Inpharmatics (42). ..

    Article Title: Breast tumor kinase (Brk/PTK6) is a mediator of hypoxia-associated breast cancer progression
    Article Snippet: For immunofluorescence staining, FFPE sections (5–7 um) were antigen retrieved using 1× citrate buffer, stained with Sik primary antibody (sc - 916) at 1:50 dilution overnight at room temperature, followed by Alexa Flour-594 (Invitrogen) secondary and mounted with VECTASHIELD (Vector Laboratories, Inc. Burlingame, CA). .. Kaplan-Meier curves Survival analysis was done using the van’t Veer microarray dataset downloaded from Rosetta Inpharmatics ( http://www.rii.com/publications/2002/vantveer.html ). ..

    Article Title: Breast Cancer Methylomes Establish an Epigenomic Foundation for Metastasis
    Article Snippet: .. The 295-sample van’t Veer microarray data set (NKI295) was downloaded from the Rosetta InPharmatics Web site ( 17 ). ..

    Article Title: Breast tumor kinase (Brk/PTK6) is a mediator of hypoxia-associated breast cancer progression
    Article Snippet: For immunofluorescence staining, FFPE sections (5–7 um) were antigen retrieved using 1× citrate buffer, stained with Sik primary antibody (sc - 916) at 1:50 dilution overnight at room temperature, followed by Alexa Flour-594 (Invitrogen) secondary and mounted with VECTASHIELD (Vector Laboratories, Inc. Burlingame, CA). .. Survival analysis was done using the van’t Veer microarray dataset downloaded from Rosetta Inpharmatics ( http://www.rii.com/publications/2002/vantveer.html ). ..

    Article Title: Breast Cancer Methylomes Establish an Epigenomic Foundation for Metastasis
    Article Snippet: .. Statistical analysis and CIMP repression signature The 295-sample van’t Veer microarray data set (NKI295) was downloaded from the Rosetta InPharmatics Web site ( 17 ). ..

    Gene Expression:

    Article Title: Method of predicting risk of recurrence of cancer
    Article Snippet: .. Publicly available breast cancer microarray datasets were downloaded from Rosetta Inpharmatics and Gene Expression Omnibus (GSE6532 and GSE3494). ..



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    Image Search Results


    TRIM21 is elevated in astrocytes across MS. A Analysis of TRIM21 mRNA expression in the control and white matter lesion tissues of MS patients based on gene expression profiling microarray data ( GSE138614 ). B TRIM21 mRNA levels in PBMC samples of healthy controls (n = 12) and MS patients (n = 20) were quantified by RT-qPCR. C Representative immunoblots and corresponding quantification of TRIM21 protein levels in brain tissues from EAE mice at 28 dpi (n = 5). D Representative immunoblot images and the corresponding quantitative analysis of TRIM21 protein expression in spinal cord tissues from EAE mice at 28 dpi (n = 5). E Immunofluorescence co-localization analysis of TRIM21 (red) and the astrocyte marker GFAP (green) in brain and spinal cord sections from control and EAE mice at 28 dpi (n = 5). Scale bar, 50 µm

    Journal: Journal of Neuroinflammation

    Article Title: TRIM21 promotes astrocyte-mediated neuroinflammation in experimental autoimmune encephalomyelitis by stabilizing RGMa via K33-linked ubiquitination

    doi: 10.1186/s12974-026-03769-4

    Figure Lengend Snippet: TRIM21 is elevated in astrocytes across MS. A Analysis of TRIM21 mRNA expression in the control and white matter lesion tissues of MS patients based on gene expression profiling microarray data ( GSE138614 ). B TRIM21 mRNA levels in PBMC samples of healthy controls (n = 12) and MS patients (n = 20) were quantified by RT-qPCR. C Representative immunoblots and corresponding quantification of TRIM21 protein levels in brain tissues from EAE mice at 28 dpi (n = 5). D Representative immunoblot images and the corresponding quantitative analysis of TRIM21 protein expression in spinal cord tissues from EAE mice at 28 dpi (n = 5). E Immunofluorescence co-localization analysis of TRIM21 (red) and the astrocyte marker GFAP (green) in brain and spinal cord sections from control and EAE mice at 28 dpi (n = 5). Scale bar, 50 µm

    Article Snippet: The microarray dataset GSE138614 was retrieved from the Gene Expression Omnibus (GEO) repository of the National Center for Biotechnology Information ( https://www.ncbi.nlm.nih.gov/geo/ ).

    Techniques: Expressing, Control, Gene Expression, Microarray, Quantitative RT-PCR, Western Blot, Immunofluorescence, Marker

    SIRT3 is downregulated in RCC. ( A ) Based on the GEO GSE53757 dataset, SIRT3 mRNA levels in RCC tissues were compared with those in normal tissues. ( B ) SIRT3 protein levels in RCC tissues were analyzed in comparison to adjacent normal tissues using CPTAC data. ( C ) SIRT3 protein levels in RCC tissues and normal tissues were detected using immunohistochemistry (IHC). A scatter plot was generated to display the expression of SIRT3 in adjacent normal tissues versus RCC tissues. ( D, E ) Enrichment plots were produced to illustrate the gene expression signatures for proliferation (CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_DN) and migration (GOBP_ENDOTHELIAL_CELL_MIGRATION). *** P < 0.001.

    Journal: Scientific Reports

    Article Title: SIRT3 suppresses renal cancer progression by regulating IDH2 acetylation

    doi: 10.1038/s41598-026-37783-6

    Figure Lengend Snippet: SIRT3 is downregulated in RCC. ( A ) Based on the GEO GSE53757 dataset, SIRT3 mRNA levels in RCC tissues were compared with those in normal tissues. ( B ) SIRT3 protein levels in RCC tissues were analyzed in comparison to adjacent normal tissues using CPTAC data. ( C ) SIRT3 protein levels in RCC tissues and normal tissues were detected using immunohistochemistry (IHC). A scatter plot was generated to display the expression of SIRT3 in adjacent normal tissues versus RCC tissues. ( D, E ) Enrichment plots were produced to illustrate the gene expression signatures for proliferation (CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_DN) and migration (GOBP_ENDOTHELIAL_CELL_MIGRATION). *** P < 0.001.

    Article Snippet: The GSE53757 microarray dataset was obtained through the National Center for Biotechnology Information Gene Expression Omnibus database (NCBI GEO, https://www.ncbi.nlm.nih.gov/gds/?term=GSE53757 ).

    Techniques: Comparison, Immunohistochemistry, Generated, Expressing, Produced, Gene Expression, Migration