Review

genomatix software packages (Genomatix gmbh)

About

News

Press Release

Team

Advisors

Partners

Contact

Bioz Stars

Bioz vStars

Buy from Supplier

Structured Review

Genomatix gmbh genomatix software packages
Genomatix Software Packages, supplied by Genomatix gmbh, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/megalign+computer+program/genomatix+matinspector/pm25447821-47-9-7
Average 90 stars, based on 1 article reviews

genomatix software packages - by Bioz Stars, 2026-10

90/100 stars

Images

Binding Assay:

Article Title: E2F3a Activates Gadd45b Gene Expression Through PPARα-Mediated Transcriptional Regulation in Hepatic Cells.
Article Snippet: .. While searching for possible positive transcription factors for Gadd45b mRNA, the Genomatix analysis tool (https://www.genomatix.de) discovered the E2F transcription factor binding site, V$E2FF. ..

Article Title: BRN3A, a transcription factor, regulates the expression of genes involved in biological processes shaping the HPV induced cervical cancer.
Article Snippet: approximately 90% of death related to cervical cancer globally (Bruni et al. 2019).. According to the institute for health metrics and evaluation report, 2016, the development of cervical cancer must entail a risk factor (Fitzmaurice et al. 1990).. Epidemiological pieces of evidence suggest that infection of human papillomavirus (HPV) is a ubiquitous risk factor associated with more than 99.7% of cervical cancer (Burd 2003).

Article Title: E2F3a activates Gadd45b gene expression through PPARα-mediated transcriptional regulation in hepatic cells
Article Snippet: .. While searching for possible positive transcription factors for Gadd45b mRNA, the Genomatix analysis tool ( https://www.genomatix.de ) discovered the E2F transcription factor binding site, V$E2FF. ..

Article Title: E2F3a Activates Gadd45b Gene Expression Through PPARα-Mediated Transcriptional Regulation in Hepatic Cells.
Article Snippet: .. Hence we explored the possible enhancing transcription factor for the Gadd45b expression through the utilization of the Genomatix analysis tool, we identified E2F binding motifs within the GADD45b promoter region. ..

other:

Article Title: Runx3, Brn3a and Isl1 interplay orchestrates the transcriptional program in the early stages of proprioceptive neuron development
Article Snippet: The results revealed 32,823 Brn3a-bound and 16,036 Isl1-bound regions, of which 23,671 (72.1%) and 11,451 (71.4%) peaks, respectively, harbored their respective consensus motifs V$BRNF and V$LHXF (Genomatix sequence tools).

Article Title: Artesunate Inhibits Neointimal Hyperplasia by Promoting IRF4 Associated Macrophage Polarization
Article Snippet: The potential IRF4 binding sites in the KLF4 promoter were predicted using Genomatix ( http://www.genomatix.de/ ) online software.

Article Title: Artesunate Inhibits Neointimal Hyperplasia by Promoting IRF4 Associated Macrophage Polarization.
Article Snippet: The potential IRF4 binding sites in the KLF4 promoter were predicted using Genomatix (http://www.genomatix.de/) online software.

Expressing:

Image Search Results

FIGURE 1 Phylogenetic tree of vertebrate calponin and isoforms. The phylogenetic tree was generated by alignment of amino acid sequences of calponin isoforms in representative vertebrate species with the DNASTAR MegAlign computer software (Lasergene, lnc, Madison, WI) using the Clustal W method. The sequence similarity-derived evolutionary lineages demonstrate that each of the calponin isoforms is conserved in the vertebrate phylum while the three isoforms have signiﬁcantly diverged during vertebrate evolution. This pattern indicates the adaptation of the calponin isoforms to different cell functions and tissue environments. Calponin isoforms 1, 2, and 3 are marked in purple, red and green, respectively. The degrees of evolutionary divergence are indicated by the lengths of lineage lines. The NCBI database accession numbers of the sequences analyzed are: African clawed frog CNN1, NP_001085014.1; African clawed frog CNN2, ABG49504.1; African clawed frog CNN3, NP_001080482.1; Atlantic salmon CNN1, NP_001139857.1; Atlantic salmon CNN2, NP_001133873.1; Atlantic salmon CNN3, NP_001133337.1; Band tailed pigeon CNN2, OPJ86593.1; Bighead croaker CNN1, TKS92442.1; Bighead croaker CNN2, TKS80042.1; Bighead croaker CNN3, TKS88103.1; Brown tree snake CNN2, JAG68493.1; Chimpanzee CNN1,NP_ 001267033.1; Chimpanzee CNN2, JAA13388.1; Chimpanzee CNN3, JAA44470.1; Chinese hamster CNN1, EGV96164.1; Chinese hamster CNN2, EGV99480.1; Chinese hamster CNN 3, EGW11625.1; Chicken CNN1, NP_990847.1; Chicken CNN2, NP_001135728.1; Chicken CNN3, NP_001341600.1; Copperhead snake CNN2, JAV51035.1; Eastern Diamondback rattlesnake CNN2, AFJ49586.1; Human CNN1, NP_001290.2; Human CNN2, AAI48265.1; Human CNN3, AAB35752.1; Mainland tiger snake CNN1, XP_026535408.1; Mouse CNN1, AAI38864.1; Mouse CNN2, EDL31614.1; Mouse CNN3, AAH85268.1; Naked mole CNN1, JAN96391.1; Naked mole CNN2, EHB16944.1; Naked mole CNN3, XP_004841280.1; Snakehead ﬁsh CNN1, KAF3700611.1; Snakehead ﬁsh CNN2, KAF3699176.1; Snakehead ﬁsh CNN3, KAF3703402.1; Western terrestrial garter snake CNN1, XP_032066879.1; Western clawed frog CNN1, NP_001015796.1; Western clawed frog CNN2, NP_998841.1; Western clawed frog CNN3, NP_989257.1; Western terrestrial garter snake CNN2, XP_032064388.1; Western terrestrial garter snake CNN3, XP_032074010.1; Zebraﬁsh CNN1, XP_701038.5; Zebraﬁsh CNN2, NP_ 998514.1; Zebraﬁsh CNN3, NP_956047.1.

Journal: Frontiers in cell and developmental biology

Article Title: Evolution and function of calponin and transgelin.

doi: 10.3389/fcell.2023.1206147

Figure Lengend Snippet: FIGURE 1 Phylogenetic tree of vertebrate calponin and isoforms. The phylogenetic tree was generated by alignment of amino acid sequences of calponin isoforms in representative vertebrate species with the DNASTAR MegAlign computer software (Lasergene, lnc, Madison, WI) using the Clustal W method. The sequence similarity-derived evolutionary lineages demonstrate that each of the calponin isoforms is conserved in the vertebrate phylum while the three isoforms have signiﬁcantly diverged during vertebrate evolution. This pattern indicates the adaptation of the calponin isoforms to different cell functions and tissue environments. Calponin isoforms 1, 2, and 3 are marked in purple, red and green, respectively. The degrees of evolutionary divergence are indicated by the lengths of lineage lines. The NCBI database accession numbers of the sequences analyzed are: African clawed frog CNN1, NP_001085014.1; African clawed frog CNN2, ABG49504.1; African clawed frog CNN3, NP_001080482.1; Atlantic salmon CNN1, NP_001139857.1; Atlantic salmon CNN2, NP_001133873.1; Atlantic salmon CNN3, NP_001133337.1; Band tailed pigeon CNN2, OPJ86593.1; Bighead croaker CNN1, TKS92442.1; Bighead croaker CNN2, TKS80042.1; Bighead croaker CNN3, TKS88103.1; Brown tree snake CNN2, JAG68493.1; Chimpanzee CNN1,NP_ 001267033.1; Chimpanzee CNN2, JAA13388.1; Chimpanzee CNN3, JAA44470.1; Chinese hamster CNN1, EGV96164.1; Chinese hamster CNN2, EGV99480.1; Chinese hamster CNN 3, EGW11625.1; Chicken CNN1, NP_990847.1; Chicken CNN2, NP_001135728.1; Chicken CNN3, NP_001341600.1; Copperhead snake CNN2, JAV51035.1; Eastern Diamondback rattlesnake CNN2, AFJ49586.1; Human CNN1, NP_001290.2; Human CNN2, AAI48265.1; Human CNN3, AAB35752.1; Mainland tiger snake CNN1, XP_026535408.1; Mouse CNN1, AAI38864.1; Mouse CNN2, EDL31614.1; Mouse CNN3, AAH85268.1; Naked mole CNN1, JAN96391.1; Naked mole CNN2, EHB16944.1; Naked mole CNN3, XP_004841280.1; Snakehead ﬁsh CNN1, KAF3700611.1; Snakehead ﬁsh CNN2, KAF3699176.1; Snakehead ﬁsh CNN3, KAF3703402.1; Western terrestrial garter snake CNN1, XP_032066879.1; Western clawed frog CNN1, NP_001015796.1; Western clawed frog CNN2, NP_998841.1; Western clawed frog CNN3, NP_989257.1; Western terrestrial garter snake CNN2, XP_032064388.1; Western terrestrial garter snake CNN3, XP_032074010.1; Zebraﬁsh CNN1, XP_701038.5; Zebraﬁsh CNN2, NP_ 998514.1; Zebraﬁsh CNN3, NP_956047.1.

Article Snippet: The phylogenetic tree was generated by aligning amino acid sequences of the three transgelin isoforms in representative vertebrate classes including fish, amphibian, reptile, avian, and mammal with the MegAlign computer program (Lasergene; DNASTAR, lnc, Madison, WI) using Clustal W method.

Techniques: Generated, Software, Sequencing, Derivative Assay, Western Blot

FIGURE 2 Phylogenetic tree of vertebrate transgelin isoforms. The phylogenetic tree was generated by aligning amino acid sequences of the three transgelin isoforms in representative vertebrate classes including ﬁsh, amphibian, reptile, avian, and mammal with the MegAlign computer program (Lasergene; DNASTAR, lnc, Madison, WI) using Clustal W method. The degrees of evolutionary divergence are indicated by the lengths of lineage lines. TAGLN, TAGLN2, and TAGLN3 isoforms are marked in purple, red and green, respectively. The NCBI database accession numbers of the sequences analyzed are: African clawed frog TAGLN, NP_001083600.1; African clawed frog TAGLN2 NP_001080783.1; African turquoise killiﬁsh TAGLN3, KAF7213900.1; Black-legged kittiwake TAGLN, XP_054078918.1; Black-legged kittiwake TAGLN2, XP_054038817.1; Black-legged kittiwake TAGLN3, XP_054071416.1; Cape cliff lizard TAGLN, XP_053124973.1; Cape cliff lizard TAGLN2, XP_053133737.1; Cape cliff lizard TAGLN3, XP_053167629.1; Chicken TAGLN, AAA48782.1; Chicken TAGLN2, XP_024999416.1; Chicken TAGLN3, XP_040518015.1; Diamondback rattlesnake TAGLN, JAI10881.1; European plaice TAGLN, XP_053298355.1; European seabass TAGLN, XP_051257332.1; Green swordtail TAGLN3, KAF5894368.1; Human TAGLN, NP_001001522.1; Human TAGLN2, KAI4083433.1; Human TAGLN3, KAI2530827.1; Mexican tetra TAGLN2, XP_049332440.1; Mexican tetra TAGLN3, KAG9283353.1; Mouse TAGLN, CAA92941.1; Mouse TAGLN2, NP_848713.1; Mouse TAGLN3, AAH55338.1; Orange spotted grouper TAGLN, ABW04145.1; Tiger rattlesnake TAGLN, 2, XP_039222054.1; Tiger rattlesnake TAGLN3, XP_039220015.1; Tiny caecilian TAGLN, XP_030076731.1; Tiny caecilian TAGLN2, XP_030043052.1; Tiny caecilian TAGLN3, XP_030060064.1; Two-lined caecilian TAGLN, XP_029429188.1; Two-lined caecilian TAGLN2, XP_XP_ 029436331.1; Two-lined caecilian TAGLN3, XP_029434652.1; Western clawed frog TAGLN, NP_001025579.1; Western clawed frog TAGLN2, NP_ 989354.1; Yellow drum ﬁsh TAGLN, KAG8008337.1.

Journal: Frontiers in cell and developmental biology

Article Title: Evolution and function of calponin and transgelin.

doi: 10.3389/fcell.2023.1206147

Figure Lengend Snippet: FIGURE 2 Phylogenetic tree of vertebrate transgelin isoforms. The phylogenetic tree was generated by aligning amino acid sequences of the three transgelin isoforms in representative vertebrate classes including ﬁsh, amphibian, reptile, avian, and mammal with the MegAlign computer program (Lasergene; DNASTAR, lnc, Madison, WI) using Clustal W method. The degrees of evolutionary divergence are indicated by the lengths of lineage lines. TAGLN, TAGLN2, and TAGLN3 isoforms are marked in purple, red and green, respectively. The NCBI database accession numbers of the sequences analyzed are: African clawed frog TAGLN, NP_001083600.1; African clawed frog TAGLN2 NP_001080783.1; African turquoise killiﬁsh TAGLN3, KAF7213900.1; Black-legged kittiwake TAGLN, XP_054078918.1; Black-legged kittiwake TAGLN2, XP_054038817.1; Black-legged kittiwake TAGLN3, XP_054071416.1; Cape cliff lizard TAGLN, XP_053124973.1; Cape cliff lizard TAGLN2, XP_053133737.1; Cape cliff lizard TAGLN3, XP_053167629.1; Chicken TAGLN, AAA48782.1; Chicken TAGLN2, XP_024999416.1; Chicken TAGLN3, XP_040518015.1; Diamondback rattlesnake TAGLN, JAI10881.1; European plaice TAGLN, XP_053298355.1; European seabass TAGLN, XP_051257332.1; Green swordtail TAGLN3, KAF5894368.1; Human TAGLN, NP_001001522.1; Human TAGLN2, KAI4083433.1; Human TAGLN3, KAI2530827.1; Mexican tetra TAGLN2, XP_049332440.1; Mexican tetra TAGLN3, KAG9283353.1; Mouse TAGLN, CAA92941.1; Mouse TAGLN2, NP_848713.1; Mouse TAGLN3, AAH55338.1; Orange spotted grouper TAGLN, ABW04145.1; Tiger rattlesnake TAGLN, 2, XP_039222054.1; Tiger rattlesnake TAGLN3, XP_039220015.1; Tiny caecilian TAGLN, XP_030076731.1; Tiny caecilian TAGLN2, XP_030043052.1; Tiny caecilian TAGLN3, XP_030060064.1; Two-lined caecilian TAGLN, XP_029429188.1; Two-lined caecilian TAGLN2, XP_XP_ 029436331.1; Two-lined caecilian TAGLN3, XP_029434652.1; Western clawed frog TAGLN, NP_001025579.1; Western clawed frog TAGLN2, NP_ 989354.1; Yellow drum ﬁsh TAGLN, KAG8008337.1.

Techniques: Generated, Western Blot

FIGURE 3 Phylogenetic tree of invertebrate calponin isoforms. The phylogenetic tree of invertebrate calponin was generated by aligning the amino acid sequences of annotated calponin isoforms in the representative invertebrate species with the MegAlign computer program (Lasergene; DNASTAR, lnc, Madison, WI) using Clustal W method. The degrees of evolutionary divergence are indicated by the lengths of lineage lines. Calponin isoforms 1, 2, and 3 are indicated in purple, red and green fonts, respectively. The NCBI database accession numbers of the sequences analyzed are: Bark spider CNN2, GIY95920.1; Bat sea star CNN1, XP_038068192.1; Bat sea star CNN3, XP_038068193.1; Belted springtail CNN1, ODN05277.1; Bird tapeworm CNN3, JAP59453.1; Blood ﬂuke CNN3, XP_012795279.2; Dog round worm CNN2, KHN73181.1; Dog tapeworm CNN1, KAH9282893.1; Dog tapeworm CNN3, EUB56891.1; East Asian octopus CNN1, XP_029648512.1; Fungivorous round worm CNN2, KAH7720906.1; Garden spider CNN3, GBN55272.1; Gray mussel CNN2, APB61452.1; Hood coral CNN1, PFX34187.1; Hood coral CNN3, PFX34186.1; Human whip worm CNN1, CDW60276.1; Intoshia linei worm CNN1, OAF71457.1; Japanese scallop CNN3, OWF41392.1; Oriental liver ﬂuke CNN3, GAA43144.2; Pale anemone CNN1,KXJ22199.1; Taxon placozoa CNN1, RDD43626.1; Water ﬂea CNN3, JAM94970.1; White springtail CNN1, OXA37663.1; Satsuma tube worm CNN3, KAI0207068.1; Salmon louse CNN3, ACO12641.1; Sea louse CNN3, ACO14747.1; Sea spider CNN3, KAG1690965.1; Spider mite CNN3, XP_015791637.1.

Journal: Frontiers in cell and developmental biology

Article Title: Evolution and function of calponin and transgelin.

doi: 10.3389/fcell.2023.1206147

Figure Lengend Snippet: FIGURE 3 Phylogenetic tree of invertebrate calponin isoforms. The phylogenetic tree of invertebrate calponin was generated by aligning the amino acid sequences of annotated calponin isoforms in the representative invertebrate species with the MegAlign computer program (Lasergene; DNASTAR, lnc, Madison, WI) using Clustal W method. The degrees of evolutionary divergence are indicated by the lengths of lineage lines. Calponin isoforms 1, 2, and 3 are indicated in purple, red and green fonts, respectively. The NCBI database accession numbers of the sequences analyzed are: Bark spider CNN2, GIY95920.1; Bat sea star CNN1, XP_038068192.1; Bat sea star CNN3, XP_038068193.1; Belted springtail CNN1, ODN05277.1; Bird tapeworm CNN3, JAP59453.1; Blood ﬂuke CNN3, XP_012795279.2; Dog round worm CNN2, KHN73181.1; Dog tapeworm CNN1, KAH9282893.1; Dog tapeworm CNN3, EUB56891.1; East Asian octopus CNN1, XP_029648512.1; Fungivorous round worm CNN2, KAH7720906.1; Garden spider CNN3, GBN55272.1; Gray mussel CNN2, APB61452.1; Hood coral CNN1, PFX34187.1; Hood coral CNN3, PFX34186.1; Human whip worm CNN1, CDW60276.1; Intoshia linei worm CNN1, OAF71457.1; Japanese scallop CNN3, OWF41392.1; Oriental liver ﬂuke CNN3, GAA43144.2; Pale anemone CNN1,KXJ22199.1; Taxon placozoa CNN1, RDD43626.1; Water ﬂea CNN3, JAM94970.1; White springtail CNN1, OXA37663.1; Satsuma tube worm CNN3, KAI0207068.1; Salmon louse CNN3, ACO12641.1; Sea louse CNN3, ACO14747.1; Sea spider CNN3, KAG1690965.1; Spider mite CNN3, XP_015791637.1.

Techniques: Generated

FIGURE 4 Phylogenetic tree of invertebrate animal and fungal transgelin isoforms. The phylogenetic tree was generated by aligning amino acid sequences of transgelin isoforms of representative invertebrate species with the DNASTAR MegAlign computer software (Lasergene, lnc, Madison, WI) using Clustal W method. Transgelin isoforms 1, 2, and 3 are listed in purple, red and green fonts, respectively. Fungal transgelins are highlighted in brown font. The NCBI database accession numbers of the sequences are: California two spot octopus TAGLN3, XP_014777580.1; Caenorhabditis elegans TAGLN, NP_ 493713.2; Common house spider TAGLN, LAA01862.1; Common starﬁsh TAGLN, QAA95982.1; Darwini’s bark spider TAGLN3, GIY80101.1; Dog tapeworm TAGLN, KAH9282095.1; Oriental liver ﬂuke TAGLN, KAG5444608.1; Freshwater snail TAGLN3, KAH9519225.1; Hood coral TAGLN2, PFX34185.1; Human scabies TAGLN2, KAI7688587.1; Japanese scallop TAGLN3, OWF50751.1; Mediterranean mussel TAGLN, VDI10566.1; Oriental lung ﬂuke TAGLN, KAA3679206.1; Pharaoh cuttleﬁsh TAGLN, CAE1295289.1; Pork worm TAGLN2, KRY33709.1; Satsuma tube worm TAGLN2, KAI0231824.1; Sea slug TAGLN, GFO13790.1; Silkworm moth TAGLN, ABF51271.1; Speckled wood butterﬂy TAGLN, JAA92459.1; Strawberry crimp disease nematode TAGLN, KAI6193121.1; Water ﬂea TAGLN3, JAJ10604.1; Aspergillus luchuensis TAGLN, GAT26957.1; Budding yeast TAGLN, KAF4004496.1; Candida parapsilosis TAGLN, KAI5906036.1; Fission yeast TAGLN, O14185.1.

Journal: Frontiers in cell and developmental biology

Article Title: Evolution and function of calponin and transgelin.

doi: 10.3389/fcell.2023.1206147

Figure Lengend Snippet: FIGURE 4 Phylogenetic tree of invertebrate animal and fungal transgelin isoforms. The phylogenetic tree was generated by aligning amino acid sequences of transgelin isoforms of representative invertebrate species with the DNASTAR MegAlign computer software (Lasergene, lnc, Madison, WI) using Clustal W method. Transgelin isoforms 1, 2, and 3 are listed in purple, red and green fonts, respectively. Fungal transgelins are highlighted in brown font. The NCBI database accession numbers of the sequences are: California two spot octopus TAGLN3, XP_014777580.1; Caenorhabditis elegans TAGLN, NP_ 493713.2; Common house spider TAGLN, LAA01862.1; Common starﬁsh TAGLN, QAA95982.1; Darwini’s bark spider TAGLN3, GIY80101.1; Dog tapeworm TAGLN, KAH9282095.1; Oriental liver ﬂuke TAGLN, KAG5444608.1; Freshwater snail TAGLN3, KAH9519225.1; Hood coral TAGLN2, PFX34185.1; Human scabies TAGLN2, KAI7688587.1; Japanese scallop TAGLN3, OWF50751.1; Mediterranean mussel TAGLN, VDI10566.1; Oriental lung ﬂuke TAGLN, KAA3679206.1; Pharaoh cuttleﬁsh TAGLN, CAE1295289.1; Pork worm TAGLN2, KRY33709.1; Satsuma tube worm TAGLN2, KAI0231824.1; Sea slug TAGLN, GFO13790.1; Silkworm moth TAGLN, ABF51271.1; Speckled wood butterﬂy TAGLN, JAA92459.1; Strawberry crimp disease nematode TAGLN, KAI6193121.1; Water ﬂea TAGLN3, JAJ10604.1; Aspergillus luchuensis TAGLN, GAT26957.1; Budding yeast TAGLN, KAF4004496.1; Candida parapsilosis TAGLN, KAI5906036.1; Fission yeast TAGLN, O14185.1.

Techniques: Generated, Software

FIGURE 8 Phylogeny of the calponin-transgelin superfamily genes in vertebrates. The combined phylogenetic tree of vertebrate calponin and transgelin isoforms was generated by aligning amino acid sequences of representative species with the DNASTAR MegAlign computer software (Lasergene, lnc, Madison, WI) using Clustal W method. Transgelin isoforms 1, 2, and 3 are marked in purple, red and green fonts, respectively. The vertebrate calponin isoforms 1, 2, and 3 are clustered in the blue box. The phylogenetic lineages demonstrate that calponin and transgelin diverged early during vertebrate evolution and transgelin-1 emerged before transgelin-2, transgelin-3 and the three calponin isoforms. The NCBI database accession numbers of the sequences are listed in the legends of Figures 1, 2.

Journal: Frontiers in cell and developmental biology

Article Title: Evolution and function of calponin and transgelin.

doi: 10.3389/fcell.2023.1206147

Figure Lengend Snippet: FIGURE 8 Phylogeny of the calponin-transgelin superfamily genes in vertebrates. The combined phylogenetic tree of vertebrate calponin and transgelin isoforms was generated by aligning amino acid sequences of representative species with the DNASTAR MegAlign computer software (Lasergene, lnc, Madison, WI) using Clustal W method. Transgelin isoforms 1, 2, and 3 are marked in purple, red and green fonts, respectively. The vertebrate calponin isoforms 1, 2, and 3 are clustered in the blue box. The phylogenetic lineages demonstrate that calponin and transgelin diverged early during vertebrate evolution and transgelin-1 emerged before transgelin-2, transgelin-3 and the three calponin isoforms. The NCBI database accession numbers of the sequences are listed in the legends of Figures 1, 2.

Techniques: Generated, Software

FIGURE 9 Overall phylogeny of calponin-transgelin genes in vertebrate and invertebrate animals. The combined phylogenetic tree of vertebrate and invertebrate calponin and transgelin was generated by aligning amino acid sequences of representative species with the DNASTAR MegAlign computer software (Lasergene, lnc, Madison, WI) using Clustal W method. Vertebrate calponin isoforms are in blue font, invertebrate calponins are in black font, vertebrate transgelins are in green font and invertebrate transgelins are in red font. The NCBI database accession numbers of the sequences are in the legends of Figures 1–4. The evolutionary lineages show that while calponin and transgelin have evolved into distinct and conserved isoforms in vertebrates, the invertebrate homologs are signiﬁcantly less differentiated.

Journal: Frontiers in cell and developmental biology

Article Title: Evolution and function of calponin and transgelin.

doi: 10.3389/fcell.2023.1206147

Figure Lengend Snippet: FIGURE 9 Overall phylogeny of calponin-transgelin genes in vertebrate and invertebrate animals. The combined phylogenetic tree of vertebrate and invertebrate calponin and transgelin was generated by aligning amino acid sequences of representative species with the DNASTAR MegAlign computer software (Lasergene, lnc, Madison, WI) using Clustal W method. Vertebrate calponin isoforms are in blue font, invertebrate calponins are in black font, vertebrate transgelins are in green font and invertebrate transgelins are in red font. The NCBI database accession numbers of the sequences are in the legends of Figures 1–4. The evolutionary lineages show that while calponin and transgelin have evolved into distinct and conserved isoforms in vertebrates, the invertebrate homologs are signiﬁcantly less differentiated.

Techniques: Generated, Software

Review

genomatix software packages (Genomatix gmbh)

Structured Review

Images

Related Articles

Binding Assay:

other:

Expressing:

Similar Products

Image Search Results