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Broad Institute Inc gene-e matrix visualization and analysis tool
Gene E Matrix Visualization And Analysis Tool, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/matrix+analysis/gene+e+matrix+visualization+and+analysis+platform/pmc04460793-37-9-11
Average 90 stars, based on 1 article reviews
gene-e matrix visualization and analysis tool - by Bioz Stars, 2026-11
90/100 stars

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Related Articles

other:

Article Title: Phosphorylation of zinc channel ZIP7 drives MAPK, PI3K and mTOR growth and proliferation signalling
Article Snippet: Heat maps were generated using a GENE-E matrix visualization and analysis platform (The Broad Institute).

Article Title: Assessment of a Highly Multiplexed RNA Sequencing Platform and Comparison to Existing High-Throughput Gene Expression Profiling Techniques
Article Snippet: For 3’DGE, pre-quantified gene expression count matrices were obtained from the Broad Institute, Cambridge, MA, United States.

Article Title: Striatal neurons directly converted from Huntington’s disease patient fibroblasts recapitulate age-associated disease phenotypes
Article Snippet: Gene expression heat maps were generated using Z-scores for expression values of each gene among different samples (GENE-E Matrix Visualization and Analysis Platform, Broad Institute).

Article Title: The protein kinase p38α destabilizes p63 to limit epidermal stem cell frequency and tumorigenic potential
Article Snippet: Survival analysis of patient groups with differential RPPA signals was performed using GraphPad Prism.

Produced:

Article Title: Peripheral tissues reprogram CD8 + T cells for pathogenicity during graft-versus-host disease
Article Snippet: .. Additional hierarchical clustering and heat maps were produced using the matrix visualization and analysis platform GENE-E (Broad Institute, USA). ..

Software:

Article Title: TGF-β1 modulates microglial phenotype and promotes recovery after intracerebral hemorrhage
Article Snippet: All statistical analyses were performed using Stata v11. circle were labeled on the plot, and each sample was plotted and color coded. .. Heatmaps were created using MATLAB and GENE-E, a matrix visualization software available through the Broad Institute (http:// www.broadinstitute.org). .. Enrichment analysis was performed using the Cytoscape (v3.3.0) plugin GeneMania (v3.4.0).



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Bacterial DNA was extracted from infant fecal samples and analyzed by shotgun metagenomic sequencing to profile gut microbiome at the genus level. Correlations are shown between the relative abundance of bacterial genera and fecal IgA against (A) EHEC, (B) Salmonella , and (C) Shigella .

Journal: bioRxiv

Article Title: Discovery of Novel Probiotic Species to Improve Infant Health

doi: 10.1101/2025.10.27.684727

Figure Lengend Snippet: Bacterial DNA was extracted from infant fecal samples and analyzed by shotgun metagenomic sequencing to profile gut microbiome at the genus level. Correlations are shown between the relative abundance of bacterial genera and fecal IgA against (A) EHEC, (B) Salmonella , and (C) Shigella .

Article Snippet: To prepare bacterial DNA samples for microbiome analysis, 100 mg of frozen fecal material was placed in Fast Prep Lysing Matrix D tubes containing ceramic beads (MP Biomedicals) and incubated in 1 mL of PBS on ice for 1 hour.

Techniques: Sequencing