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longranger basic pipeline  (10X Genomics)

 
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    10X Genomics longranger basic pipeline
    Longranger Basic Pipeline, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/longranger+basic/longranger+v2+2+2+pipeline/pmc11540331-107-27-30
    Average 90 stars, based on 1 article reviews
    longranger basic pipeline - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Patterns of structural variation define prostate cancer across disease states
    Article Snippet: The Long Ranger v2.2.2 pipeline (10X Genomics) was used for aligning sequence reads to the human genome hg38 (GRCh38).

    Article Title: A genome resource for Acacia , Australia’s largest plant genus
    Article Snippet: To generate barcode-attached reads in FASTQ format, read data was processed using the LongRanger 2.2.2 basic pipeline (10X Genomics) with default settings.

    Article Title: Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study.
    Article Snippet: The 10X Genomics Chromium fastq files were mapped and reads were phased using LongRanger to the hg38/GRCh38 reference genome using the LongRanger v2.2.2 pipeline [https://genome.cshlp.org/content/29/4/635.full].

    Article Title: Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies
    Article Snippet: The 10X Genomics Chromium fastq files were mapped and reads were phased using LongRanger [ ] to the hg38/GRCh38 reference genome using the LongRanger v2.2.2 pipeline [ https://genome.cshlp.org/content/29/4/635.full ].

    Article Title: Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study
    Article Snippet: The 10X Genomics Chromium fastq files were mapped and reads were phased using LongRanger to the hg38/GRCh38 reference genome using the LongRanger v2.2.2 pipeline [ https://genome.cshlp.org/content/29/4/635.full ].

    Article Title: The genomic history of the Middle East
    Article Snippet: Long Ranger pipeline v2.2.2 (GATK v3.7) , 10x Genomics , https://support.10xgenomics.com/genome-exome/software/downloads/latest.

    Software:

    Article Title: Harpy: a pipeline for processing haplotagging linked-read data
    Article Snippet: .. Similarly, the LongRanger software pipeline aided the adoption of the 10X Genomics linked-read technology but became abandoned in 2020 when the 10X Genomics linked-reads technology was discontinued. ..



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