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10X Genomics longranger basic v2.2.2
Longranger Basic V2.2.2, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/longranger+basic/longranger+basic+v2+2+2/pmc10700109-75-10-14
Average 90 stars, based on 1 article reviews
longranger basic v2.2.2 - by Bioz Stars, 2026-11
90/100 stars

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Article Title: Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks
Article Snippet: Two rounds of polishing 10X data was mapped to the two haplotypes using Longranger v.2.2.2 (https://github.com/10XGenomics/longranger) and polished using freebayes v.1.356 (https://github.com/freebayes/freebayes).

Article Title: Genomic evidence reveals three W-autosome fusions in Heliconius butterflies
Article Snippet: The 10X data were mapped to this assembly using Longranger v2.2 (10X Genomics) and variant calling was performed using freebayes v1.1.0-3-g961e5f3 [ ].

Article Title: A personalized multi-platform assessment of somatic mosaicism in the human frontal cortex
Article Snippet: We used LongRanger v2.2 to analyze the linked-read sequencing data from 10x Genomics for the LIBD75 bulk tissue.

Article Title: SpecHLA enables full-resolution HLA typing from sequencing data
Article Snippet: LongRanger v2.2.2 , 10x Genomics , https://support.10xgenomics.com/genome-exome/software/downloads/latest.

Article Title: Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance
Article Snippet: Small variants and structural variants were called by longranger-2.2.2 ( https://support.10xgenomics.com/genome-exome/software/downloads/latest ) with default parameters from 10x Genomics linked read data sets.

Article Title: Loss of genetic variation and ancestral sex determination system in North American northern pike characterized by whole-genome resequencing.
Article Snippet: The ArrowGrid pipeline was run a total of three times, then the output was 20 subjected to a round of polishing using Pilon v1.22 (Walker et al., 2014) using the 10X chromium data 21 that had been pre-processed using Longranger v2.2.2 (10X Genomics) to remove barcodes.

Article Title: Complete CD16A Deficiency and Defective NK Cell Function in a Man Living with HIV
Article Snippet: Longranger v.2.2.2 (10X Genomics) was used to phase reads by their shared index.

Article Title: A chromosome-level reference genome for the common octopus, Octopus vulgaris (Cuvier, 1797)
Article Snippet: In brief, this pipeline first preprocessed the 10x reads with LongRanger basic v2.2.2 ( https://github.com/10XGenomics/longranger ) and filtered the ONT reads with FiltLong v0.2.0 ( https://github.com/rrwick/Filtlong ), and then the ONT reads were assembled with both Flye v2.9 ( Kolmogorov et al. 2019 ) and NextDenovo v2.4.0 ( Hu et al. 2023 ).



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