longranger 2 2 2 basic pipeline (10X Genomics)
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10X Genomics
longranger 2 2 2 basic pipeline
Longranger 2 2 2 Basic Pipeline, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/longranger+basic/2+2+longranger/pm36240205-69-13-17
Average 86 stars, based on 1 article reviews
Longranger 2 2 2 Basic Pipeline, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/longranger+basic/2+2+longranger/pm36240205-69-13-17
Average 86 stars, based on 1 article reviews
longranger 2 2 2 basic pipeline - by Bioz Stars,
2026-11
86/100 stars
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Variant Assay:Article Title: Benchmarking challenging small variants with linked and long reads Article Snippet: These callsets, generated independently for each individual in the Ashkenazi trio, used LongRanger (version 2.2, code at https://github.com/10XGenomics/longranger ) and GATK v4.0.0.0 as variant caller with default parameters on 10x Genomics linked-reads data for the family trio (84x, 70x, and 69x coverage for HG002 NA24385 son, HG003 NA24149 father, and HG004 NA24143 mother, respectively) against both GRCh37 and GRCh38. .. The vcf and bam files for each genome are under: ftp: //ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/AshkenazimTrio/analysis/10XGenomics_ChromiumGenome_LongRanger2.2_Supernova2.0.1_04122018/ The variant curation used the 10x Genomics VCF from Article Title: Benchmarking challenging small variants with linked and long reads Article Snippet: .. 2_Supernova2.0.1_04122018/ The variant curation used the 10xGenomics VCF from Software:Article Title: A functionally conserved STORR gene fusion in Papaver species that diverged 16.8 million years ago. Article Snippet: .. Final draft genome assemblies (Supplementary Table 4) were achieved after two more rounds of base polishing using FREEBAYES software tool55 after the Illumina short reads from the 10X Chromium libraries were mapped to the working assembly with Article Title: Cantaloupe melon genome reveals 3D chromatin features and structural relationship with the ancestral cucurbitaceae karyotype. Article Snippet: .. A second round of polishing was performed using 10X Genomics paired-end library (114x coverage) using other:Article Title: 3D genome topology distinguishes molecular subgroups of medulloblastoma. Article Snippet: Data were aligned to reference genome b37 using Article Title: Cantaloupe melon genome reveals 3D chromatin features and structural relationship with the ancestral cucurbitaceae karyotype Article Snippet: Longranger 2.2.0 , |