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Broad Institute Inc basic local alignment search tool
Basic Local Alignment Search Tool, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/local+alignment+search+tool+algorithm/basic+local+alignment+search+tool/pm26058534-148-43-30
Average 90 stars, based on 1 article reviews
basic local alignment search tool - by Bioz Stars, 2026-10
90/100 stars

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Article Title: EBR1 genomic expansion and its role in virulence of Fusarium species.
Article Snippet: Wilfried Jonkers,1† Henry Xayamongkhon,1 Matthew Haas,1 Chantal Olivain,2 H. Charlotte van der Does,3 Karen Broz,4 Martijn Rep,3 Claude Alabouvette,2 Christian Steinberg and H. Corby Kistler1,4* Department of Plant Pathology, University of Minnesota, 1991 Upper Buford Circle St. Paul, MN 55108, USA.. UMR 1347 Agroécologie, INRA, BP 86510, F-21065 Dijon cedex, France.. Plant Pathology, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, The Netherlands.

Article Title: Phylogenomic and functional domain analysis of polyketide synthases in Fusarium.
Article Snippet: Fusarium verticillioides, Fusarium graminearum, and Fusarium oxysporum PKS genes were identified by Basic Local Alignment Search Tool (BLAST) analysis against all predicted proteins (Altschul et al. 1990) at the Broad Institute (http://www.broad institute.org/annotation/genome/fusarium_verticillioides/ MultiHome.html), and Fusarium solani PKS genes were identified at the Joint Genome Institute (JGI) (http://genome.jgipsf.org/) websites as described (Ma et al. 2010).

Sequencing:

Article Title: The Sterol-C7 desaturase from the ciliate Tetrahymena thermophila is a Rieske Oxygenase, which is highly conserved in animals.
Article Snippet: The retention times and mass spectra of all new peaks obtained were compared with those of standards (Sigma-Aldrich) and those available in the National Institute of Standards and Technology mass spectral library. .. Phylogenetic and Sequence Analyses The data set for the phylogenetic analysis was prepared with sequences obtained from Genbank, JGI, Ensembl, UniProtKB, and Broad Institute (62 sequences, accession numbers in supplementary table S2, Supplementary Material online) using Basic Local Alignment Search Tool against the nonredundant protein database. .. One hundred microliters of acetic anhydride was added, and the mixture was incubated for 40 min at 80 C. The composition of the steryl acetate ester derivatives was analyzed by running samples through an SPB-1 column (30 m 0.25 mm 0.25mm; Supelco) in a Shimadzu GC2010 Plus gas chromatograph.

Article Title: Unravelling the biosynthesis of pyriculol in the rice blast fungus Magnaporthe oryzae
Article Snippet: .. Identification and sequence analysis of polyketide synthase genes in M. oryzae Sequence analysis and comparison of the PKS-related genes in the M. oryzae genome [ Magnaporthe Comparative Sequencing Project, Broad Institute of Harvard and MIT ( www.broadinstitute.org/ ); MG8] were performed by the Basic Local Alignment Search Tool ( blast ; http://genome.jgi.doe.gov/pages/blast-query.jsf?db=Maggr1 ). ..

Article Title: High osmolarity glycerol (HOG) signalling in Magnaporthe oryzae: Identification of MoYPD1 and its role in osmoregulation, fungicide action, and pathogenicity.
Article Snippet: All chemicals used were obtained from Sigmae Aldrich (Munich, Germany) unless otherwise stated. .. Identification and sequence analysis of HOG signalling associated genes in Magnaporthe oryzae Sequence analysis and comparison of the HOG signalling associated genes in theMagnaporthe oryzae genome (Magnaporthe comparative Sequencing Project, Broad Institute of Harvard and MIT (http://www.broadinstitute.org/, MG8)) were performed by the basic local alignment search tool (http:// www.broadinstitute.org/annotation/genome/magnaporthe_comparative/Blast.html) withHOG signalling associated genes of S. cerevisiae (http://www.yeastgenome.org/). ..

Comparison:

Article Title: Unravelling the biosynthesis of pyriculol in the rice blast fungus Magnaporthe oryzae
Article Snippet: .. Identification and sequence analysis of polyketide synthase genes in M. oryzae Sequence analysis and comparison of the PKS-related genes in the M. oryzae genome [ Magnaporthe Comparative Sequencing Project, Broad Institute of Harvard and MIT ( www.broadinstitute.org/ ); MG8] were performed by the Basic Local Alignment Search Tool ( blast ; http://genome.jgi.doe.gov/pages/blast-query.jsf?db=Maggr1 ). ..

Article Title: High osmolarity glycerol (HOG) signalling in Magnaporthe oryzae: Identification of MoYPD1 and its role in osmoregulation, fungicide action, and pathogenicity.
Article Snippet: All chemicals used were obtained from Sigmae Aldrich (Munich, Germany) unless otherwise stated. .. Identification and sequence analysis of HOG signalling associated genes in Magnaporthe oryzae Sequence analysis and comparison of the HOG signalling associated genes in theMagnaporthe oryzae genome (Magnaporthe comparative Sequencing Project, Broad Institute of Harvard and MIT (http://www.broadinstitute.org/, MG8)) were performed by the basic local alignment search tool (http:// www.broadinstitute.org/annotation/genome/magnaporthe_comparative/Blast.html) withHOG signalling associated genes of S. cerevisiae (http://www.yeastgenome.org/). ..



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