Centrifugation:
other:Article Title: Distinct synaptic mechanisms underlie NRXN1 variant and disorder background-dependent phenotypes in iPSC-derived neurons.
Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Rabbit anti-VGAT primary antibody Millipore RRID:AB_2301998; Cat # AB5062P Mouse anti VGLUT1 primary Antibody Synaptic Systems RRID:AB_887877; Cat #135302 Goat anti-mouse 647 secondary antibody Thermo Fisher RRID:AB_2535813; Cat # A-21245 Goat anti-Rabbit 546 secondary antibody Thermo Fisher RRID:AB_2534077; Cat # A-11010 Bacterial and virus strains Top10 E. Coli bacteria Thermo Fisher Cat #C404010 pTet-O-Ngn2-puro LV Produced in the Pak Lab N/A pTet-O-Ascl1-puro LV Produced in the Pak Lab N/A pTet-O-Dlx2-hygro LV Produced in the Pak Lab N/A pTet-O-EGFP LV Produced in the Pak Lab N/A pTet-O-TdTomato LV Produced in the Pak Lab N/A FUW-M2rtTA LV Produced in the Pak Lab N/A FLP-GFP LV Produced in the Pak Lab N/A Cre-GFP LV Produced in the Pak Lab N/A Biological samples Goat serum Gibco Cat # 16-210-064 Fetal bovine serum (for neuronal media) Fisher Cat # SH3007003 Fetal bovine serum (for HEK media) Sigma Cat #F0926-500ML Mouse laminin Thermo Fisher Cat # 23017-015 Chemicals, peptides, and recombinant proteins Calcium chloride (CaCl2) Sigma C5670-500G Magnesium chloride (MgCl2) Sigma Cat #M8266-100G Sucrose Sigma Cat #S0839-1KG DPBS Gibco Cat # 14190-250 Matrigel Corning Cat # 356235 TergaZyme Alconox Cat #Z273287 Trypan Blue Thermo Cat # 15250061 Paraformaldehyde (PFA) Electron Microscopy Sciences Cat # 1457141 Dimethyl sulfoxide (DMSO) Sigma Cat #D2650-5X5ML Triton X-100 Sigma Cat #T8787-250ML Buffer RLT Qiagen Cat # 79216 B-mercaptoethanol Sigma Cat #M6250 Sodium chloride Sigma Cat #S9888-5KG Sodium phosphate dibasic Sigma Cat #S7907 HEPES Sigma Cat #H4034-100G LB agar powder Thermo Cat# J75851-A1 Borate buffer Thermo Cat # 28341 Polyethyleneumine (PEI) Sigma/Merck Cat #P3143 K-Gluconate Sigma Cat #G4500-100G Potassium chloride (KCl) Sigma Cat #P3911 ATP-Mg Sigma Cat # A9187-100MG GTP-Na2 Sigma Cat #G8877-25MG Phosphocreatine Sigma Cat #P7936-10MG (Continued on next page) Cell Reports 45, 117115, April 28, 2026 15
Virus:Article Title: Protocol for the genome-wide identification of intrinsic transcription factor binding motifs by mammalian-optimized pull-down sequencing.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains BL21 (DE3) Stratagene Cat#230130 Chemicals, peptides, and recombinant proteins Ampicillin sodium salt Merck Cat#BP785 Amylose resin NEB Cat#E8021L Acryl/Bis 40% solution Thermo Fisher Scientific Cat#HC2040 APS Thermo Fisher Scientific Cat#HC2005 Agarose Thermo Fisher Scientific Cat#16500500 Acetic Acid Glacial Thermo Fisher Scientific Cat#039745.AE Absolute ethyl alcohol Merck Cat#E7023 Boric acid Thermo Fisher Scientific Cat#A16624.0 B DNase I ZYMO RESEARCH Cat#E1010 DTT Merck Cat#646563 EDTA⋅2H 2 O Thermo Fisher Scientific Cat#15576028 IPTG Thermo Fisher Scientific Cat#15529019 Imidazole Merck Cat#I202 LB premix Thermo Fisher Scientific Cat#12780052 LB Agar premix Thermo Fisher Scientific Cat22700041 MgCl 2 ⋅6H 2 O Thermo Fisher Scientific Cat#AM9530G Ni-NTA agarose QIAGEN Cat#30210 Proteinase K NEB Cat#P8107S PBS Merck Cat#P2272 Protease Inhibitor Cocktail Powder Thermo Fisher Scientific Cat#78429 PMSF Merck Cat#93482 (Continued on next page) 2 STAR Protocols 7, 104513, June 19, 2026 MATERIALS AND EQUIPMENT Continued REAGENT or RESOURCE SOURCE IDENTIFIER SPRIselect Beckman Coulter Cat#B23317 SYBR Gold Thermo Fisher Scientific Cat#S11494 SYBR Green I Thermo Fisher Scientific Cat#S7567 TCEP Merck Cat#646547 Ultra Low Range DNA Ladder NEB Cat#N0558S 1Kb DNA Ladder Thermo Fisher Scientific Cat#10787026 100bp DNA Ladder Thermo Fisher Scientific Cat#15628019 100% Glycerol Merck Cat#G7893 1 M Tris-HCl Thermo Fisher Scientific Cat#15567027 5 M NaCl Thermo Fisher Scientific Cat#A57006 Critical commercial assays Qiagen Blood & Cell Culture DNA Maxi Kit QIAGEN Cat#13343 QIAquick PCR & Gel Cleanup Kit QIAGEN Cat#28506 NEBNext Ultra II DNA Library Prep with Sample Purification Beads NEB Cat#E7103S NEBNext Multiplex Oligos for Illumina NEB Cat#E7600S Experimental models: Cell lines EL4 ATCC TIB-39 Oligonucleotides IR-FKHM-F: ATGGCGCTTGAACTTCTGTTTACTA CAGTAAACAGTCGGCTGGGAGAACA IDTDNA https://www.idtdna.com ..
Recombinant:Article Title: Protocol for the genome-wide identification of intrinsic transcription factor binding motifs by mammalian-optimized pull-down sequencing.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains BL21 (DE3) Stratagene Cat#230130 Chemicals, peptides, and recombinant proteins Ampicillin sodium salt Merck Cat#BP785 Amylose resin NEB Cat#E8021L Acryl/Bis 40% solution Thermo Fisher Scientific Cat#HC2040 APS Thermo Fisher Scientific Cat#HC2005 Agarose Thermo Fisher Scientific Cat#16500500 Acetic Acid Glacial Thermo Fisher Scientific Cat#039745.AE Absolute ethyl alcohol Merck Cat#E7023 Boric acid Thermo Fisher Scientific Cat#A16624.0 B DNase I ZYMO RESEARCH Cat#E1010 DTT Merck Cat#646563 EDTA⋅2H 2 O Thermo Fisher Scientific Cat#15576028 IPTG Thermo Fisher Scientific Cat#15529019 Imidazole Merck Cat#I202 LB premix Thermo Fisher Scientific Cat#12780052 LB Agar premix Thermo Fisher Scientific Cat22700041 MgCl 2 ⋅6H 2 O Thermo Fisher Scientific Cat#AM9530G Ni-NTA agarose QIAGEN Cat#30210 Proteinase K NEB Cat#P8107S PBS Merck Cat#P2272 Protease Inhibitor Cocktail Powder Thermo Fisher Scientific Cat#78429 PMSF Merck Cat#93482 (Continued on next page) 2 STAR Protocols 7, 104513, June 19, 2026 MATERIALS AND EQUIPMENT Continued REAGENT or RESOURCE SOURCE IDENTIFIER SPRIselect Beckman Coulter Cat#B23317 SYBR Gold Thermo Fisher Scientific Cat#S11494 SYBR Green I Thermo Fisher Scientific Cat#S7567 TCEP Merck Cat#646547 Ultra Low Range DNA Ladder NEB Cat#N0558S 1Kb DNA Ladder Thermo Fisher Scientific Cat#10787026 100bp DNA Ladder Thermo Fisher Scientific Cat#15628019 100% Glycerol Merck Cat#G7893 1 M Tris-HCl Thermo Fisher Scientific Cat#15567027 5 M NaCl Thermo Fisher Scientific Cat#A57006 Critical commercial assays Qiagen Blood & Cell Culture DNA Maxi Kit QIAGEN Cat#13343 QIAquick PCR & Gel Cleanup Kit QIAGEN Cat#28506 NEBNext Ultra II DNA Library Prep with Sample Purification Beads NEB Cat#E7103S NEBNext Multiplex Oligos for Illumina NEB Cat#E7600S Experimental models: Cell lines EL4 ATCC TIB-39 Oligonucleotides IR-FKHM-F: ATGGCGCTTGAACTTCTGTTTACTA CAGTAAACAGTCGGCTGGGAGAACA IDTDNA https://www.idtdna.com ..
Protease Inhibitor:Article Title: Protocol for the genome-wide identification of intrinsic transcription factor binding motifs by mammalian-optimized pull-down sequencing.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains BL21 (DE3) Stratagene Cat#230130 Chemicals, peptides, and recombinant proteins Ampicillin sodium salt Merck Cat#BP785 Amylose resin NEB Cat#E8021L Acryl/Bis 40% solution Thermo Fisher Scientific Cat#HC2040 APS Thermo Fisher Scientific Cat#HC2005 Agarose Thermo Fisher Scientific Cat#16500500 Acetic Acid Glacial Thermo Fisher Scientific Cat#039745.AE Absolute ethyl alcohol Merck Cat#E7023 Boric acid Thermo Fisher Scientific Cat#A16624.0 B DNase I ZYMO RESEARCH Cat#E1010 DTT Merck Cat#646563 EDTA⋅2H 2 O Thermo Fisher Scientific Cat#15576028 IPTG Thermo Fisher Scientific Cat#15529019 Imidazole Merck Cat#I202 LB premix Thermo Fisher Scientific Cat#12780052 LB Agar premix Thermo Fisher Scientific Cat22700041 MgCl 2 ⋅6H 2 O Thermo Fisher Scientific Cat#AM9530G Ni-NTA agarose QIAGEN Cat#30210 Proteinase K NEB Cat#P8107S PBS Merck Cat#P2272 Protease Inhibitor Cocktail Powder Thermo Fisher Scientific Cat#78429 PMSF Merck Cat#93482 (Continued on next page) 2 STAR Protocols 7, 104513, June 19, 2026 MATERIALS AND EQUIPMENT Continued REAGENT or RESOURCE SOURCE IDENTIFIER SPRIselect Beckman Coulter Cat#B23317 SYBR Gold Thermo Fisher Scientific Cat#S11494 SYBR Green I Thermo Fisher Scientific Cat#S7567 TCEP Merck Cat#646547 Ultra Low Range DNA Ladder NEB Cat#N0558S 1Kb DNA Ladder Thermo Fisher Scientific Cat#10787026 100bp DNA Ladder Thermo Fisher Scientific Cat#15628019 100% Glycerol Merck Cat#G7893 1 M Tris-HCl Thermo Fisher Scientific Cat#15567027 5 M NaCl Thermo Fisher Scientific Cat#A57006 Critical commercial assays Qiagen Blood & Cell Culture DNA Maxi Kit QIAGEN Cat#13343 QIAquick PCR & Gel Cleanup Kit QIAGEN Cat#28506 NEBNext Ultra II DNA Library Prep with Sample Purification Beads NEB Cat#E7103S NEBNext Multiplex Oligos for Illumina NEB Cat#E7600S Experimental models: Cell lines EL4 ATCC TIB-39 Oligonucleotides IR-FKHM-F: ATGGCGCTTGAACTTCTGTTTACTA CAGTAAACAGTCGGCTGGGAGAACA IDTDNA https://www.idtdna.com ..
SYBR Green Assay:Article Title: Protocol for the genome-wide identification of intrinsic transcription factor binding motifs by mammalian-optimized pull-down sequencing.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains BL21 (DE3) Stratagene Cat#230130 Chemicals, peptides, and recombinant proteins Ampicillin sodium salt Merck Cat#BP785 Amylose resin NEB Cat#E8021L Acryl/Bis 40% solution Thermo Fisher Scientific Cat#HC2040 APS Thermo Fisher Scientific Cat#HC2005 Agarose Thermo Fisher Scientific Cat#16500500 Acetic Acid Glacial Thermo Fisher Scientific Cat#039745.AE Absolute ethyl alcohol Merck Cat#E7023 Boric acid Thermo Fisher Scientific Cat#A16624.0 B DNase I ZYMO RESEARCH Cat#E1010 DTT Merck Cat#646563 EDTA⋅2H 2 O Thermo Fisher Scientific Cat#15576028 IPTG Thermo Fisher Scientific Cat#15529019 Imidazole Merck Cat#I202 LB premix Thermo Fisher Scientific Cat#12780052 LB Agar premix Thermo Fisher Scientific Cat22700041 MgCl 2 ⋅6H 2 O Thermo Fisher Scientific Cat#AM9530G Ni-NTA agarose QIAGEN Cat#30210 Proteinase K NEB Cat#P8107S PBS Merck Cat#P2272 Protease Inhibitor Cocktail Powder Thermo Fisher Scientific Cat#78429 PMSF Merck Cat#93482 (Continued on next page) 2 STAR Protocols 7, 104513, June 19, 2026 MATERIALS AND EQUIPMENT Continued REAGENT or RESOURCE SOURCE IDENTIFIER SPRIselect Beckman Coulter Cat#B23317 SYBR Gold Thermo Fisher Scientific Cat#S11494 SYBR Green I Thermo Fisher Scientific Cat#S7567 TCEP Merck Cat#646547 Ultra Low Range DNA Ladder NEB Cat#N0558S 1Kb DNA Ladder Thermo Fisher Scientific Cat#10787026 100bp DNA Ladder Thermo Fisher Scientific Cat#15628019 100% Glycerol Merck Cat#G7893 1 M Tris-HCl Thermo Fisher Scientific Cat#15567027 5 M NaCl Thermo Fisher Scientific Cat#A57006 Critical commercial assays Qiagen Blood & Cell Culture DNA Maxi Kit QIAGEN Cat#13343 QIAquick PCR & Gel Cleanup Kit QIAGEN Cat#28506 NEBNext Ultra II DNA Library Prep with Sample Purification Beads NEB Cat#E7103S NEBNext Multiplex Oligos for Illumina NEB Cat#E7600S Experimental models: Cell lines EL4 ATCC TIB-39 Oligonucleotides IR-FKHM-F: ATGGCGCTTGAACTTCTGTTTACTA CAGTAAACAGTCGGCTGGGAGAACA IDTDNA https://www.idtdna.com ..
Cell Culture:Article Title: Protocol for the genome-wide identification of intrinsic transcription factor binding motifs by mammalian-optimized pull-down sequencing.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains BL21 (DE3) Stratagene Cat#230130 Chemicals, peptides, and recombinant proteins Ampicillin sodium salt Merck Cat#BP785 Amylose resin NEB Cat#E8021L Acryl/Bis 40% solution Thermo Fisher Scientific Cat#HC2040 APS Thermo Fisher Scientific Cat#HC2005 Agarose Thermo Fisher Scientific Cat#16500500 Acetic Acid Glacial Thermo Fisher Scientific Cat#039745.AE Absolute ethyl alcohol Merck Cat#E7023 Boric acid Thermo Fisher Scientific Cat#A16624.0 B DNase I ZYMO RESEARCH Cat#E1010 DTT Merck Cat#646563 EDTA⋅2H 2 O Thermo Fisher Scientific Cat#15576028 IPTG Thermo Fisher Scientific Cat#15529019 Imidazole Merck Cat#I202 LB premix Thermo Fisher Scientific Cat#12780052 LB Agar premix Thermo Fisher Scientific Cat22700041 MgCl 2 ⋅6H 2 O Thermo Fisher Scientific Cat#AM9530G Ni-NTA agarose QIAGEN Cat#30210 Proteinase K NEB Cat#P8107S PBS Merck Cat#P2272 Protease Inhibitor Cocktail Powder Thermo Fisher Scientific Cat#78429 PMSF Merck Cat#93482 (Continued on next page) 2 STAR Protocols 7, 104513, June 19, 2026 MATERIALS AND EQUIPMENT Continued REAGENT or RESOURCE SOURCE IDENTIFIER SPRIselect Beckman Coulter Cat#B23317 SYBR Gold Thermo Fisher Scientific Cat#S11494 SYBR Green I Thermo Fisher Scientific Cat#S7567 TCEP Merck Cat#646547 Ultra Low Range DNA Ladder NEB Cat#N0558S 1Kb DNA Ladder Thermo Fisher Scientific Cat#10787026 100bp DNA Ladder Thermo Fisher Scientific Cat#15628019 100% Glycerol Merck Cat#G7893 1 M Tris-HCl Thermo Fisher Scientific Cat#15567027 5 M NaCl Thermo Fisher Scientific Cat#A57006 Critical commercial assays Qiagen Blood & Cell Culture DNA Maxi Kit QIAGEN Cat#13343 QIAquick PCR & Gel Cleanup Kit QIAGEN Cat#28506 NEBNext Ultra II DNA Library Prep with Sample Purification Beads NEB Cat#E7103S NEBNext Multiplex Oligos for Illumina NEB Cat#E7600S Experimental models: Cell lines EL4 ATCC TIB-39 Oligonucleotides IR-FKHM-F: ATGGCGCTTGAACTTCTGTTTACTA CAGTAAACAGTCGGCTGGGAGAACA IDTDNA https://www.idtdna.com ..
Polymerase Chain Reaction:Article Title: Protocol for the genome-wide identification of intrinsic transcription factor binding motifs by mammalian-optimized pull-down sequencing.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains BL21 (DE3) Stratagene Cat#230130 Chemicals, peptides, and recombinant proteins Ampicillin sodium salt Merck Cat#BP785 Amylose resin NEB Cat#E8021L Acryl/Bis 40% solution Thermo Fisher Scientific Cat#HC2040 APS Thermo Fisher Scientific Cat#HC2005 Agarose Thermo Fisher Scientific Cat#16500500 Acetic Acid Glacial Thermo Fisher Scientific Cat#039745.AE Absolute ethyl alcohol Merck Cat#E7023 Boric acid Thermo Fisher Scientific Cat#A16624.0 B DNase I ZYMO RESEARCH Cat#E1010 DTT Merck Cat#646563 EDTA⋅2H 2 O Thermo Fisher Scientific Cat#15576028 IPTG Thermo Fisher Scientific Cat#15529019 Imidazole Merck Cat#I202 LB premix Thermo Fisher Scientific Cat#12780052 LB Agar premix Thermo Fisher Scientific Cat22700041 MgCl 2 ⋅6H 2 O Thermo Fisher Scientific Cat#AM9530G Ni-NTA agarose QIAGEN Cat#30210 Proteinase K NEB Cat#P8107S PBS Merck Cat#P2272 Protease Inhibitor Cocktail Powder Thermo Fisher Scientific Cat#78429 PMSF Merck Cat#93482 (Continued on next page) 2 STAR Protocols 7, 104513, June 19, 2026 MATERIALS AND EQUIPMENT Continued REAGENT or RESOURCE SOURCE IDENTIFIER SPRIselect Beckman Coulter Cat#B23317 SYBR Gold Thermo Fisher Scientific Cat#S11494 SYBR Green I Thermo Fisher Scientific Cat#S7567 TCEP Merck Cat#646547 Ultra Low Range DNA Ladder NEB Cat#N0558S 1Kb DNA Ladder Thermo Fisher Scientific Cat#10787026 100bp DNA Ladder Thermo Fisher Scientific Cat#15628019 100% Glycerol Merck Cat#G7893 1 M Tris-HCl Thermo Fisher Scientific Cat#15567027 5 M NaCl Thermo Fisher Scientific Cat#A57006 Critical commercial assays Qiagen Blood & Cell Culture DNA Maxi Kit QIAGEN Cat#13343 QIAquick PCR & Gel Cleanup Kit QIAGEN Cat#28506 NEBNext Ultra II DNA Library Prep with Sample Purification Beads NEB Cat#E7103S NEBNext Multiplex Oligos for Illumina NEB Cat#E7600S Experimental models: Cell lines EL4 ATCC TIB-39 Oligonucleotides IR-FKHM-F: ATGGCGCTTGAACTTCTGTTTACTA CAGTAAACAGTCGGCTGGGAGAACA IDTDNA https://www.idtdna.com ..
Sample Purification:Article Title: Protocol for the genome-wide identification of intrinsic transcription factor binding motifs by mammalian-optimized pull-down sequencing.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains BL21 (DE3) Stratagene Cat#230130 Chemicals, peptides, and recombinant proteins Ampicillin sodium salt Merck Cat#BP785 Amylose resin NEB Cat#E8021L Acryl/Bis 40% solution Thermo Fisher Scientific Cat#HC2040 APS Thermo Fisher Scientific Cat#HC2005 Agarose Thermo Fisher Scientific Cat#16500500 Acetic Acid Glacial Thermo Fisher Scientific Cat#039745.AE Absolute ethyl alcohol Merck Cat#E7023 Boric acid Thermo Fisher Scientific Cat#A16624.0 B DNase I ZYMO RESEARCH Cat#E1010 DTT Merck Cat#646563 EDTA⋅2H 2 O Thermo Fisher Scientific Cat#15576028 IPTG Thermo Fisher Scientific Cat#15529019 Imidazole Merck Cat#I202 LB premix Thermo Fisher Scientific Cat#12780052 LB Agar premix Thermo Fisher Scientific Cat22700041 MgCl 2 ⋅6H 2 O Thermo Fisher Scientific Cat#AM9530G Ni-NTA agarose QIAGEN Cat#30210 Proteinase K NEB Cat#P8107S PBS Merck Cat#P2272 Protease Inhibitor Cocktail Powder Thermo Fisher Scientific Cat#78429 PMSF Merck Cat#93482 (Continued on next page) 2 STAR Protocols 7, 104513, June 19, 2026 MATERIALS AND EQUIPMENT Continued REAGENT or RESOURCE SOURCE IDENTIFIER SPRIselect Beckman Coulter Cat#B23317 SYBR Gold Thermo Fisher Scientific Cat#S11494 SYBR Green I Thermo Fisher Scientific Cat#S7567 TCEP Merck Cat#646547 Ultra Low Range DNA Ladder NEB Cat#N0558S 1Kb DNA Ladder Thermo Fisher Scientific Cat#10787026 100bp DNA Ladder Thermo Fisher Scientific Cat#15628019 100% Glycerol Merck Cat#G7893 1 M Tris-HCl Thermo Fisher Scientific Cat#15567027 5 M NaCl Thermo Fisher Scientific Cat#A57006 Critical commercial assays Qiagen Blood & Cell Culture DNA Maxi Kit QIAGEN Cat#13343 QIAquick PCR & Gel Cleanup Kit QIAGEN Cat#28506 NEBNext Ultra II DNA Library Prep with Sample Purification Beads NEB Cat#E7103S NEBNext Multiplex Oligos for Illumina NEB Cat#E7600S Experimental models: Cell lines EL4 ATCC TIB-39 Oligonucleotides IR-FKHM-F: ATGGCGCTTGAACTTCTGTTTACTA CAGTAAACAGTCGGCTGGGAGAACA IDTDNA https://www.idtdna.com ..
Multiplex Assay:Article Title: Protocol for the genome-wide identification of intrinsic transcription factor binding motifs by mammalian-optimized pull-down sequencing.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Bacterial and virus strains BL21 (DE3) Stratagene Cat#230130 Chemicals, peptides, and recombinant proteins Ampicillin sodium salt Merck Cat#BP785 Amylose resin NEB Cat#E8021L Acryl/Bis 40% solution Thermo Fisher Scientific Cat#HC2040 APS Thermo Fisher Scientific Cat#HC2005 Agarose Thermo Fisher Scientific Cat#16500500 Acetic Acid Glacial Thermo Fisher Scientific Cat#039745.AE Absolute ethyl alcohol Merck Cat#E7023 Boric acid Thermo Fisher Scientific Cat#A16624.0 B DNase I ZYMO RESEARCH Cat#E1010 DTT Merck Cat#646563 EDTA⋅2H 2 O Thermo Fisher Scientific Cat#15576028 IPTG Thermo Fisher Scientific Cat#15529019 Imidazole Merck Cat#I202 LB premix Thermo Fisher Scientific Cat#12780052 LB Agar premix Thermo Fisher Scientific Cat22700041 MgCl 2 ⋅6H 2 O Thermo Fisher Scientific Cat#AM9530G Ni-NTA agarose QIAGEN Cat#30210 Proteinase K NEB Cat#P8107S PBS Merck Cat#P2272 Protease Inhibitor Cocktail Powder Thermo Fisher Scientific Cat#78429 PMSF Merck Cat#93482 (Continued on next page) 2 STAR Protocols 7, 104513, June 19, 2026 MATERIALS AND EQUIPMENT Continued REAGENT or RESOURCE SOURCE IDENTIFIER SPRIselect Beckman Coulter Cat#B23317 SYBR Gold Thermo Fisher Scientific Cat#S11494 SYBR Green I Thermo Fisher Scientific Cat#S7567 TCEP Merck Cat#646547 Ultra Low Range DNA Ladder NEB Cat#N0558S 1Kb DNA Ladder Thermo Fisher Scientific Cat#10787026 100bp DNA Ladder Thermo Fisher Scientific Cat#15628019 100% Glycerol Merck Cat#G7893 1 M Tris-HCl Thermo Fisher Scientific Cat#15567027 5 M NaCl Thermo Fisher Scientific Cat#A57006 Critical commercial assays Qiagen Blood & Cell Culture DNA Maxi Kit QIAGEN Cat#13343 QIAquick PCR & Gel Cleanup Kit QIAGEN Cat#28506 NEBNext Ultra II DNA Library Prep with Sample Purification Beads NEB Cat#E7103S NEBNext Multiplex Oligos for Illumina NEB Cat#E7600S Experimental models: Cell lines EL4 ATCC TIB-39 Oligonucleotides IR-FKHM-F: ATGGCGCTTGAACTTCTGTTTACTA CAGTAAACAGTCGGCTGGGAGAACA IDTDNA https://www.idtdna.com ..
Transformation Assay:Article Title: Construction and characterization of the first Arcobacter butzleri - Escherichia coli shuttle vector
Article Snippet: All reagents were obtained from Sigma-Aldrich, St. Louis, USA, unless otherwise specified. .. Plasmids were introduced into competent E. coli DH5α cells by heat-shock transformation, and transformants were selected on LB agar supplemented with ampicillin, 80 μg/mL X-Gal (CAS: 7240-90-6; ThermoScientific, Vilnius, Lithuania), and 0.2 mM IPTG (CAS: 367-93-1; ThermoScientific, Vilnius, Lithuania). ..
Article Title: Construction and characterization of the first Arcobacter butzleri - Escherichia coli shuttle vector.
Article Snippet: All reagents were obtained from SigmaAldrich, St. Louis, USA, unless otherwise specified. .. Plasmids were introduced into competent E. coli DH5α cells by heat-shock transformation, and transformants were selected on LB agar supplemented with ampicillin, 80 μg/ mL X-Gal (CAS: 7240-90-6; ThermoScientific, Vilnius, Lithuania), and 0.2 mM IPTG (CAS: 367-93-1; ThermoScientific, Vilnius, Lithuania). ..
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