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markus seeliger  (Addgene inc)


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    Structured Review

    Addgene inc markus seeliger
    Markus Seeliger, supplied by Addgene inc, used in various techniques. Bioz Stars score: 94/100, based on 24 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/lambda+phosphatase/Lambda+Phosphatase+(Plasmid+%2379748)/pm40997810-350-13-15
    Average 94 stars, based on 24 article reviews
    markus seeliger - by Bioz Stars, 2026-10
    94/100 stars

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    Related Articles

    Plasmid Preparation:

    Article Title: A Leishmania virulence factor harnesses an allosteric kinase switch to regulate its ubiquitin ligase activity.
    Article Snippet: All amino acid sequences were manually inspected by sequence alignments (MAFFT L-INS-I; v. 7.271 100 ) and InterProScan 102 to ascertain that both a kinase and a HECT domain were present. (ii) To expand the search for divergent homologues, the initial alignment was used to build an HMM profile and perform an HMM search using HMMER 3.1b2 103 against Eukprot3, 104 a comprehensive database of predicted proteins from genomes and transcriptomes representing most eukaryotic lineages. .. 86,109 The λ-phosphatase plasmid was a gift from John Chodera, Nicholas Levinson, and Markus Seeliger (Addgene #7974879748; http:// n2t.net/addgene: 79748; RRID:Addgene_79748). .. REAGENT or RESOURCE SOURCE IDENTIFIER Prism 9 v. 9.5.1 GraphPad https://www.graphpad.com/ Acquire MP v. 1.1.3 Refeyn Ltd. https://refeyn.com/ PhotoMol Niebling et al. 95 https://spc.embl-hamburg.de/ app/photoMol MaxQuant v.2.4.12.0 Cox and Mann, 96 Tyanova et al. 97 https://www.maxquant.org/ Alphafold3 Jumper et al. 98 https://alphafoldserver.com/ Jalview v. 2.11.3.3 Waterhouse et al. 99 https://www.jalview.org/ MAFFT Katoh and Standley 100 https://mafft.cbrc.jp DynamX v.3.0 Watersright https://waters.com PLGS v.3.0.1 Watersright https://waters.com Other Superdex 200 16/600 column Cytiva Cat#28989335 Superdex 75 16/600 Cytiva Cat#28989333 HisTrap HP 5 mL column Cytiva Cat#17524802 HiTrap SP HP column Cytiva Cat#17115201 Superose6 Increase Cytiva Cat#29091596 Superdex 75 10/300 column Cytiva Cat#17517401 Leica DMI8 Thunder Imager Leica Microsystems Serial#568757 Z2 Coulter Particle Count and Size Analyzer Beckman Coulter Cat#AW30455 Nucleofector II Amaxa Biosystems Cat#20800742 e4 Molecular Cell 85, 3711–3728.e1–e11, October 2, 2025 to exclude false positives.

    Article Title: Dual-specificity mitogen-activated protein kinase kinases can use ADP to phosphorylate MAP kinases in vitro
    Article Snippet: .. Lambda Phosphatase plasmid was ordered from Addgene (#79748) ( ). .. p38α, ERK1, and JNK1 constructs were cotransformed with lambda phosphatase plasmid into Rosetta(DE3)pLysS E. coli (Novagen).

    Article Title: The N-Myc MB0-MBI region interacts specifically and dynamically with the N-lobe of Aurora kinase A.
    Article Snippet: The 6x-His and solubility tag was cleaved with SENP2 during dialysis at 4 °C overnight and the protein was purified through incubation with Ni-NTA resin before the final polishing step by a HiLoad 16/600 Superdex 75 column (Cytiva) using GF buffer (50mM Tris-HCl pH 7.5, 150mM NaCl, 10% glycerol and 10mM β-mercaptoethanol). .. Unphosphorylated AurA122-403 with mutations C290A:C393A was produced by co-expression with λphosphatase54 (a gift from John Chodera, Nicholas Levinson and Markus Seeliger (Addgene plasmid # 79748; http://n2t.net/addgene: 79748; RRID: Addgene_79748) in BL21(DE3) cells. ..

    Article Title: Phosphorylation modulates secondary structure of intrinsically disorder regions in RNA polymerase II
    Article Snippet: .. BL21 (DE3) cells were cotransformed with plasmids containing the kinase domain of human Dyrk1a (Addgene Plasmid #79690) and the lambda phosphatase (Addgene Plasmid #79748) ( ). ..

    Article Title: PP2A and CDK16 antagonistically regulate WIPI2B phosphorylation and neuronal autophagosome biogenesis
    Article Snippet: .. Protein expression was accomplished by transforming this plasmid along with a second bacterial plasmid expressing lambda phosphatase (Addgene 79748) into BL21(DE3) E. Coli competent cells (Invitrogen). .. Selection of dual transformed colonies was performed on LB plates containing 100 μg/mL spectinomycin (MP Biomedicals) and 50 μg/mL ampicillin (Thermo Fisher).

    other:

    Article Title: Phosphorylation modulates secondary structure of intrinsically disorder regions in RNA polymerase II.
    Article Snippet: pET His6 MBP TEV LIC cloning vector (1M) was a gift from Scott Gradia (Addgene plasmid # 29656; http://n2t.net/addgene:29656; RRID:Addgene_29656).

    Software:

    Article Title: A Leishmania virulence factor harnesses an allosteric kinase switch to regulate its ubiquitin ligase activity.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER amylose magnetic beads NEB Cat#E8035S Dynabeads Protein G Invitrogen Cat#10004D Dynabeads Protein A Invitrogen Cat#10002D BS3 (bis(sulfosuccinimidyl)suberate) Thermo Fisher Scientific Cat#A39266 Q5 polymerase NEB Cat#M0491L XtremeGENE HP Sigma Aldrich Cat#06366236001 cOmpleteTM, EDTA-free Protease Inhibitor Cocktail Roche Cat#11873580001 IRDye® 800CW Maleimide LI-COR Cat#929-80020 Morpheus® HT-96 Molecular Dimensions Cat#MD1-47 NativeMark unstained protein standard Invitrogen Cat#11574986 PageRuler plus prestained protein marker Invitrogen Cat#26620 Critical commercial assays SulfoLink kit Thermo Scientific Cat#44999 mNG-Trap Magnetic Agarose Chromotek Cat#ntma Deposited data TKUL KD crystal structure This study PDB: 9GMP IP MS datasets This study Pride: PXD053520 HDX-MS datasets This study Pride: PXD057190 in vitro phospho-MS dataset This study Pride: PXD056904 unprocessed and uncompressed data from Figures 1, 2, 3, 4, 5, 6, 7 and S1–S8, and source data for all graphs This study Mendeley Data: https://doi.org/ 10.17632/528bhp8sgc.1 Experimental models: Organisms/strains L. mexicana MNYC/BZ/62/M379 Sigrid Roberts (Forest Grove, OR, USA); Roberts et al. 83 MNYC/BZ/62/M379 L. mexicana MNYC/BZ/62/M379 Cas9 This study N/A L. mexicana MNYC/BZ/62/M379 ΔTKUL This study N/A L. mexicana MNYC/BZ/62/M379 ΔTKUL + TKUL This study N/A L. mexicana MNYC/BZ/62/M379 ΔTKUL + TKUL K756A This study N/A L. mexicana MNYC/BZ/62/M379 ΔTKUL + TKUL C1392A This study N/A L. mexicana MNYC/BZ/62/M379 TKUL::mNG This study N/A mouse: C57BL/6N mice Charles River Laboratories C57BL/6N Spodoptera frugiperda Sf9 ATCC Cat#CRL-1711 Spodoptera frugiperda Sf21 (IPLB-Sf-21-AE) Oxford Expression Technologies Cat#600105 Trichopulsia Ni Hi5 Invitrogen Cat#10747474 Oligonucleotides table of primers used in this study This study Table S5 Recombinant DNA 4C-His-MBP-TKUL-FL This study N/A 4C-His-MBP-TKUL-ΔN89 This study N/A 4C-His-MBP-TKUL-ΔN119 This study N/A 4C-His-MBP-TKUL-ΔTPR This study N/A 4C-His-MBP-TKUL-FL-K756A This study N/A 4C-His-MBP-TKUL-ΔTPR-K756A This study N/A 4C-His-MBP-TKUL-FL-C1392A This study N/A 4C-His-MBP-TKUL-ΔTPR-C1392A This study N/A 4C-His-MBP-TKUL-FL-T881A This study N/A 4C-His-MBP-TKUL-FL-T883A This study N/A 4C-His-MBP-TKUL-FL-T884A This study N/A (Continued on next page) e2 Molecular Cell 85, 3711–3728.e1–e11, October 2, 2025 .. REAGENT or RESOURCE SOURCE IDENTIFIER 4C-His-MBP-TKUL-FL-3TA This study N/A 4C-His-MBP-TKUL-FL-3TE This study N/A 4C-His-MBP-TKUL-FL-S93P This study N/A 4C-His-MBP-TKUL-FL-W104D This study N/A 4C-His-MBP-TKUL-FL-E108A This study N/A 4C-His-MBP-TKUL-FL-Q109A This study N/A 4C-His-MBP-TKUL-FL-S1046Y This study N/A pGEX-6P3-GST-TKUL-KUL This study N/A pGEX-6P3-GST-TKUL-KD This study N/A pGEX-6P3-GST-TKUL-KD-crystal This study N/A pCCA1-His-SUMO-TKUL-HECT This study N/A pGEX-6P3-GST-LmHSP70 This study N/A pGEX-6P3-GST-LmHSP70-ΔC This study N/A pCCA1-His-SUMO-LmUBE2D This study N/A pCCA1-His-SUMO-LmUBE2D-K91R This study N/A pCCA1-His-SUMO-LmHSP40 This study N/A pCCA1-His-SUMO-HsUBE2D2 This study N/A pDS56-His-luciferase Morá n Luengo et al. 84 N/A pET-Lambda-phosphatase Albanese et al. 85 Addgene #79748; http://n2t.net/addgene: 79748; RRID: Addgene_79748 pFastBac-His-UBA1 Wickliffe et al. 86 N/A pET30a-Ub Wickliffe et al. 86 N/A pET30a-Ub-K6A Wickliffe et al. 86 N/A pET30a-Ub-K11A Wickliffe et al. 86 N/A pET30a-Ub-K27A Wickliffe et al. 86 N/A pET30a-Ub-K29A Wickliffe et al. 86 N/A pET30a-Ub-K33A Wickliffe et al. 86 N/A pET30a-Ub-K48A Wickliffe et al. 86 N/A pET30a-Ub-K63A Wickliffe et al. 86 N/A MCM-Ub (for labelling with IRDye® 800CW Maleimide) Liess et al. 87 N/A pRM005 Beneke et al. 88 N/A pPLOTv1 blast-mNeonGreen-blast Beneke et al. 88 N/A pPLOTv1 neo-mNeonGreen-neo Beneke et al. 88 N/A pTNeo_v1 Beneke et al. 88 N/A pTPuro_v1 Beneke et al. 88 N/A pRM005-TKUL This study N/A pRM005-TKUL-K756A This study N/A pRM005-TKUL-C1392A This study N/A Software and algorithms XDS v. Feb 5, 2021 BUILT=20210323 Kabsch 89 https://xds.mr.mpg.de/ phaser-MR McCoy et al. 90 N/A Chainsaw Stein 91 N/A phenix.refine v. 1.19.2 Liebschner et al. 92 https://phenix-online.org/ Coot v. 0.9.4 Emsley and Cowtan 93 https://www2.mrc-lmb.cam. ac.uk/personal/pemsley/coot/ PBDredo Joosten et al. 94 https://pdb-redo.eu/ PyMol v. 2.4.1 Schrö dinger, LLC https://www.pymol.org/ Image Studio Lite v. 5.2.5 LI-COR https://www.licorbio.com/image-studio (Continued on next page) Molecular Cell 85, 3711–3728.e1–e11, October 2, 2025 e3 ..

    Article Title: CaMKII monomers are sufficient for GluN2B binding, co-condensation, and synaptic potentiation.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Cell lines Primary rat hippocampal cultures Laboratory of K. Ulrich Bayer N/A HEK293T cells ATCC CRL-3216 Experimental models: Organisms/strains GluN2B LA/RQ mice (C57BL/6J) Laboratory of Johannes Hell, Halt et al.9 N/A Recombinant DNA PSD95-FingR-GFP Laboratory of Don Arnold, Gross et al.47 Addgene #46295 pMH-Halo tag (‘‘HaloFill’’) Michael Huen Addgene #154144 CaMKIIα shRNA Laboratory of K. Ulrich Bayer, Barcomb et al.46 N/A pNES-iRFP-C1 Goulden et al.63 pNES-iRFP-C1, Addgene #116863 pmTurquoise2-T2A-Venus(L68V) Goedhart et al.32 pmTurquoise2-T2A-Venus(L68V), Addgene #60494 GFP-C1-CaMKIIα Shen et al.64 GFP-C1-CAMKIIalpha, Addgene #21226 Cry2olig Taslimi et al.34 N/A CIBN-mCherry-CaMKIIα Taslimi et al.34 N/A CMV-pDisplay-Halo Tobias et al.65 CMV-pDisplay-Halo, Addgene #223497 Signal-mCherry-TM(pDisplay)-GluN2B Made in house N/A mScarlet GluN2B (soluble) Made in house, Rumian et al.7 N/A GST-GluN2Bc Made in house, Bayer et al.8 N/A 6xHis-SUMO-CaMKIIα (6HS-CaMKII) Ozden et al.16 N/A λ phosphatase Albanese et al.66 Lambda Phosphatase, Addgene #79748 Software and algorithms Prism 10.5.0 Graphpad RRID: SCR_002798 FIJI ImageJ NIH RRID: SCR_003070 Slidebook 6.0 Intelligent Imaging Innovations (3i) RRID: SCR_014300 PyMOL Schrödinger RRID: SCR_000305 PyCorrFit 1.1.7 Lab of T. Weidemann, Müller et al.67 N/A Other HisPrep FF Nickel Sepharose column Cytiva 28936551 ll OPEN ACCESS Article e2 Molecular Cell 86, 1–14.e1–e6, October 1, 2026 .. All DNA constructs were either purchased from AddGene or received as a gift and were further cloned to include the indicated fluorophores, mutations, and truncations.

    Recombinant:

    Article Title: CaMKII monomers are sufficient for GluN2B binding, co-condensation, and synaptic potentiation.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Cell lines Primary rat hippocampal cultures Laboratory of K. Ulrich Bayer N/A HEK293T cells ATCC CRL-3216 Experimental models: Organisms/strains GluN2B LA/RQ mice (C57BL/6J) Laboratory of Johannes Hell, Halt et al.9 N/A Recombinant DNA PSD95-FingR-GFP Laboratory of Don Arnold, Gross et al.47 Addgene #46295 pMH-Halo tag (‘‘HaloFill’’) Michael Huen Addgene #154144 CaMKIIα shRNA Laboratory of K. Ulrich Bayer, Barcomb et al.46 N/A pNES-iRFP-C1 Goulden et al.63 pNES-iRFP-C1, Addgene #116863 pmTurquoise2-T2A-Venus(L68V) Goedhart et al.32 pmTurquoise2-T2A-Venus(L68V), Addgene #60494 GFP-C1-CaMKIIα Shen et al.64 GFP-C1-CAMKIIalpha, Addgene #21226 Cry2olig Taslimi et al.34 N/A CIBN-mCherry-CaMKIIα Taslimi et al.34 N/A CMV-pDisplay-Halo Tobias et al.65 CMV-pDisplay-Halo, Addgene #223497 Signal-mCherry-TM(pDisplay)-GluN2B Made in house N/A mScarlet GluN2B (soluble) Made in house, Rumian et al.7 N/A GST-GluN2Bc Made in house, Bayer et al.8 N/A 6xHis-SUMO-CaMKIIα (6HS-CaMKII) Ozden et al.16 N/A λ phosphatase Albanese et al.66 Lambda Phosphatase, Addgene #79748 Software and algorithms Prism 10.5.0 Graphpad RRID: SCR_002798 FIJI ImageJ NIH RRID: SCR_003070 Slidebook 6.0 Intelligent Imaging Innovations (3i) RRID: SCR_014300 PyMOL Schrödinger RRID: SCR_000305 PyCorrFit 1.1.7 Lab of T. Weidemann, Müller et al.67 N/A Other HisPrep FF Nickel Sepharose column Cytiva 28936551 ll OPEN ACCESS Article e2 Molecular Cell 86, 1–14.e1–e6, October 1, 2026 .. All DNA constructs were either purchased from AddGene or received as a gift and were further cloned to include the indicated fluorophores, mutations, and truncations.

    shRNA:

    Article Title: CaMKII monomers are sufficient for GluN2B binding, co-condensation, and synaptic potentiation.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Cell lines Primary rat hippocampal cultures Laboratory of K. Ulrich Bayer N/A HEK293T cells ATCC CRL-3216 Experimental models: Organisms/strains GluN2B LA/RQ mice (C57BL/6J) Laboratory of Johannes Hell, Halt et al.9 N/A Recombinant DNA PSD95-FingR-GFP Laboratory of Don Arnold, Gross et al.47 Addgene #46295 pMH-Halo tag (‘‘HaloFill’’) Michael Huen Addgene #154144 CaMKIIα shRNA Laboratory of K. Ulrich Bayer, Barcomb et al.46 N/A pNES-iRFP-C1 Goulden et al.63 pNES-iRFP-C1, Addgene #116863 pmTurquoise2-T2A-Venus(L68V) Goedhart et al.32 pmTurquoise2-T2A-Venus(L68V), Addgene #60494 GFP-C1-CaMKIIα Shen et al.64 GFP-C1-CAMKIIalpha, Addgene #21226 Cry2olig Taslimi et al.34 N/A CIBN-mCherry-CaMKIIα Taslimi et al.34 N/A CMV-pDisplay-Halo Tobias et al.65 CMV-pDisplay-Halo, Addgene #223497 Signal-mCherry-TM(pDisplay)-GluN2B Made in house N/A mScarlet GluN2B (soluble) Made in house, Rumian et al.7 N/A GST-GluN2Bc Made in house, Bayer et al.8 N/A 6xHis-SUMO-CaMKIIα (6HS-CaMKII) Ozden et al.16 N/A λ phosphatase Albanese et al.66 Lambda Phosphatase, Addgene #79748 Software and algorithms Prism 10.5.0 Graphpad RRID: SCR_002798 FIJI ImageJ NIH RRID: SCR_003070 Slidebook 6.0 Intelligent Imaging Innovations (3i) RRID: SCR_014300 PyMOL Schrödinger RRID: SCR_000305 PyCorrFit 1.1.7 Lab of T. Weidemann, Müller et al.67 N/A Other HisPrep FF Nickel Sepharose column Cytiva 28936551 ll OPEN ACCESS Article e2 Molecular Cell 86, 1–14.e1–e6, October 1, 2026 .. All DNA constructs were either purchased from AddGene or received as a gift and were further cloned to include the indicated fluorophores, mutations, and truncations.

    Produced:

    Article Title: The N-Myc MB0-MBI region interacts specifically and dynamically with the N-lobe of Aurora kinase A.
    Article Snippet: The 6x-His and solubility tag was cleaved with SENP2 during dialysis at 4 °C overnight and the protein was purified through incubation with Ni-NTA resin before the final polishing step by a HiLoad 16/600 Superdex 75 column (Cytiva) using GF buffer (50mM Tris-HCl pH 7.5, 150mM NaCl, 10% glycerol and 10mM β-mercaptoethanol). .. Unphosphorylated AurA122-403 with mutations C290A:C393A was produced by co-expression with λphosphatase54 (a gift from John Chodera, Nicholas Levinson and Markus Seeliger (Addgene plasmid # 79748; http://n2t.net/addgene: 79748; RRID: Addgene_79748) in BL21(DE3) cells. ..

    Expressing:

    Article Title: PP2A and CDK16 antagonistically regulate WIPI2B phosphorylation and neuronal autophagosome biogenesis
    Article Snippet: .. Protein expression was accomplished by transforming this plasmid along with a second bacterial plasmid expressing lambda phosphatase (Addgene 79748) into BL21(DE3) E. Coli competent cells (Invitrogen). .. Selection of dual transformed colonies was performed on LB plates containing 100 μg/mL spectinomycin (MP Biomedicals) and 50 μg/mL ampicillin (Thermo Fisher).



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    (A) After standard ARE pulldowns, the AR-DNA-bound complexes were washed and resuspended in 1x kinase buffer with/without ATP at 30 o C for listed times. Gel mobility shifts in AR were detected as a function of ATP addition. All pulldowns had 100 nM R1881 present. Proteins were analyzed by immunoblotting. Lanes 3 and 4 represent the standard AR-ARE pulldown. (B) To test if the above AR gel mobility shifts were reflective of phosphorylation events, the AR-CoR complexes were treated with ATP or AMP-PNP (non-hydrolyzable analogue) for 30 min at 30 o C. The DNA-PK inhibitor NU7441 or <t>λ</t> <t>protein</t> <t>phosphatase</t> <t>(LPP)</t> were pre-incubated for 5 min before adding ATP. LPP buffer was used for the LPP control reaction. (C) DNA-PK plays a role in phosphorylating AR. ATP treatment of the AR-CoR complexes using HeLa NE where DNA-PKcs was immunodepleted reveals a reduction of AR gel mobility shifts ( left panel) with the loss of DNA-PK. Proteins were assayed by immunoblotting and the level of unphosphorylated AR was quantified by Image J after normalization to the loading control HDAC1 ( right panel). P-value here = 0.00011. (D) DNA-bound AR or ARv7 was incubated with purified heterotrimeric DNA-PK (i.e., DNA-PKcs and Ku70/80) and then treated (-/+) ATP (-/+) NU7441 to demonstrate direct phosphorylation of AR/ARv7 by DNA-PK. Gel mobility shifts were assayed by immunoblotting. (E) ATP treatment (-/+) NU7441 pre-treatment demonstrates that DNA-PK enzymatic activity is needed for stabilizing CAND1 and ANP32A in the AR/ARv7 complexes. Auto-phosphorylation of DNA-PKcs at serine 2056 (pS2056) is a marker of DNA-PK activity and its inhibition by NU7441. Proteins were assayed by immunoblotting. ARv7 was detected here with the N-20 antibody. (F) HeLa NE used in 3xARE-E4 cell-free transcription assays was pre-treated (-/+) NU7441 to determine effects on AR and ARv7 transcriptional activity. E4 mRNA transcript levels were measured by RT-qPCR. In panels A-C and E, HDAC1 was used as a loading control and ARE pulldowns were conducted using HeLa NE as listed. All AR reactions had 100 nM R1881 present. Short exp., Medium exp., and Long exp. denote short, medium, and long exposures during x-ray film development. P-values: for ARv7, p = 0.00015; for AR, p = 0.000035. **** p < 0.0005, ***** p < 0.0001.
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    Image Search Results


    (A) After standard ARE pulldowns, the AR-DNA-bound complexes were washed and resuspended in 1x kinase buffer with/without ATP at 30 o C for listed times. Gel mobility shifts in AR were detected as a function of ATP addition. All pulldowns had 100 nM R1881 present. Proteins were analyzed by immunoblotting. Lanes 3 and 4 represent the standard AR-ARE pulldown. (B) To test if the above AR gel mobility shifts were reflective of phosphorylation events, the AR-CoR complexes were treated with ATP or AMP-PNP (non-hydrolyzable analogue) for 30 min at 30 o C. The DNA-PK inhibitor NU7441 or λ protein phosphatase (LPP) were pre-incubated for 5 min before adding ATP. LPP buffer was used for the LPP control reaction. (C) DNA-PK plays a role in phosphorylating AR. ATP treatment of the AR-CoR complexes using HeLa NE where DNA-PKcs was immunodepleted reveals a reduction of AR gel mobility shifts ( left panel) with the loss of DNA-PK. Proteins were assayed by immunoblotting and the level of unphosphorylated AR was quantified by Image J after normalization to the loading control HDAC1 ( right panel). P-value here = 0.00011. (D) DNA-bound AR or ARv7 was incubated with purified heterotrimeric DNA-PK (i.e., DNA-PKcs and Ku70/80) and then treated (-/+) ATP (-/+) NU7441 to demonstrate direct phosphorylation of AR/ARv7 by DNA-PK. Gel mobility shifts were assayed by immunoblotting. (E) ATP treatment (-/+) NU7441 pre-treatment demonstrates that DNA-PK enzymatic activity is needed for stabilizing CAND1 and ANP32A in the AR/ARv7 complexes. Auto-phosphorylation of DNA-PKcs at serine 2056 (pS2056) is a marker of DNA-PK activity and its inhibition by NU7441. Proteins were assayed by immunoblotting. ARv7 was detected here with the N-20 antibody. (F) HeLa NE used in 3xARE-E4 cell-free transcription assays was pre-treated (-/+) NU7441 to determine effects on AR and ARv7 transcriptional activity. E4 mRNA transcript levels were measured by RT-qPCR. In panels A-C and E, HDAC1 was used as a loading control and ARE pulldowns were conducted using HeLa NE as listed. All AR reactions had 100 nM R1881 present. Short exp., Medium exp., and Long exp. denote short, medium, and long exposures during x-ray film development. P-values: for ARv7, p = 0.00015; for AR, p = 0.000035. **** p < 0.0005, ***** p < 0.0001.

    Journal: PLOS One

    Article Title: Identification of CAND1 as a DNA-dependent protein kinase-regulated coactivator of androgen receptor and the ARv7 splice variant

    doi: 10.1371/journal.pone.0349130

    Figure Lengend Snippet: (A) After standard ARE pulldowns, the AR-DNA-bound complexes were washed and resuspended in 1x kinase buffer with/without ATP at 30 o C for listed times. Gel mobility shifts in AR were detected as a function of ATP addition. All pulldowns had 100 nM R1881 present. Proteins were analyzed by immunoblotting. Lanes 3 and 4 represent the standard AR-ARE pulldown. (B) To test if the above AR gel mobility shifts were reflective of phosphorylation events, the AR-CoR complexes were treated with ATP or AMP-PNP (non-hydrolyzable analogue) for 30 min at 30 o C. The DNA-PK inhibitor NU7441 or λ protein phosphatase (LPP) were pre-incubated for 5 min before adding ATP. LPP buffer was used for the LPP control reaction. (C) DNA-PK plays a role in phosphorylating AR. ATP treatment of the AR-CoR complexes using HeLa NE where DNA-PKcs was immunodepleted reveals a reduction of AR gel mobility shifts ( left panel) with the loss of DNA-PK. Proteins were assayed by immunoblotting and the level of unphosphorylated AR was quantified by Image J after normalization to the loading control HDAC1 ( right panel). P-value here = 0.00011. (D) DNA-bound AR or ARv7 was incubated with purified heterotrimeric DNA-PK (i.e., DNA-PKcs and Ku70/80) and then treated (-/+) ATP (-/+) NU7441 to demonstrate direct phosphorylation of AR/ARv7 by DNA-PK. Gel mobility shifts were assayed by immunoblotting. (E) ATP treatment (-/+) NU7441 pre-treatment demonstrates that DNA-PK enzymatic activity is needed for stabilizing CAND1 and ANP32A in the AR/ARv7 complexes. Auto-phosphorylation of DNA-PKcs at serine 2056 (pS2056) is a marker of DNA-PK activity and its inhibition by NU7441. Proteins were assayed by immunoblotting. ARv7 was detected here with the N-20 antibody. (F) HeLa NE used in 3xARE-E4 cell-free transcription assays was pre-treated (-/+) NU7441 to determine effects on AR and ARv7 transcriptional activity. E4 mRNA transcript levels were measured by RT-qPCR. In panels A-C and E, HDAC1 was used as a loading control and ARE pulldowns were conducted using HeLa NE as listed. All AR reactions had 100 nM R1881 present. Short exp., Medium exp., and Long exp. denote short, medium, and long exposures during x-ray film development. P-values: for ARv7, p = 0.00015; for AR, p = 0.000035. **** p < 0.0005, ***** p < 0.0001.

    Article Snippet: DNA-PK inhibitor NU7441 was purchased from Tocris Bioscience. λ protein phosphatase (LPP) was purchased from New England Biolabs.

    Techniques: Western Blot, Phospho-proteomics, Incubation, Control, Purification, Activity Assay, Marker, Inhibition, Quantitative RT-PCR