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isosurface function  (Amira Pharmaceuticals)

 
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    Amira Pharmaceuticals isosurface function
    Isosurface Function, supplied by Amira Pharmaceuticals, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/isosurface+function/function+isosurface/pm41346132-224-19-23
    Average 86 stars, based on 1 article reviews
    isosurface function - by Bioz Stars, 2026-10
    86/100 stars

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    other:

    Article Title: Multi-method analysis for the three-dimensional reconstruction of muscle fascicles from DiceCT datasets.
    Article Snippet: To this end, we found that an optimal Minimum Seed Correlation value could be approximated through use of the Isosurface function (native to Amira, rather than XFiber specifically).



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    Microcolonies architecture in GSFM (▴) or S-GSFM (●), after 96h at 25°C. A : Macroscopic images are obtained using an automated robot that integrates incubation and high-resolution imaging. Microscopic observations of microcolonies, endpoint stained with the cell-permeant nucleic acid dye Syto 61, are obtained with confocal laser scanning microscopy. Representative pictures correspond to the microcolonies <t>isosurface</t> after fluorescence segmentation using the Imaris isosurface functions. B : Quantitative parameters extracted from the isosurface of microcolonies in Imaris software. Each point represents an independent replicate (n=9), bars correspond to the mean of volume of microcolonies log 10 (µm 3 ) and sphericity (A.U.). A two-way ANOVA was performed to assess the effect of food stress. When a significant effect of the environment was detected, the Bonferroni multiple comparisons test was applied to evaluate the level of significance. Asterisks indicate significant differences between environments (p<0.05).
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    Microcolonies architecture in GSFM (▴) or S-GSFM (●), after 96h at 25°C. A : Macroscopic images are obtained using an automated robot that integrates incubation and high-resolution imaging. Microscopic observations of microcolonies, endpoint stained with the cell-permeant nucleic acid dye Syto 61, are obtained with confocal laser scanning microscopy. Representative pictures correspond to the microcolonies <t>isosurface</t> after fluorescence segmentation using the Imaris isosurface functions. B : Quantitative parameters extracted from the isosurface of microcolonies in Imaris software. Each point represents an independent replicate (n=9), bars correspond to the mean of volume of microcolonies log 10 (µm 3 ) and sphericity (A.U.). A two-way ANOVA was performed to assess the effect of food stress. When a significant effect of the environment was detected, the Bonferroni multiple comparisons test was applied to evaluate the level of significance. Asterisks indicate significant differences between environments (p<0.05).
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    Image Search Results


    Microcolonies architecture in GSFM (▴) or S-GSFM (●), after 96h at 25°C. A : Macroscopic images are obtained using an automated robot that integrates incubation and high-resolution imaging. Microscopic observations of microcolonies, endpoint stained with the cell-permeant nucleic acid dye Syto 61, are obtained with confocal laser scanning microscopy. Representative pictures correspond to the microcolonies isosurface after fluorescence segmentation using the Imaris isosurface functions. B : Quantitative parameters extracted from the isosurface of microcolonies in Imaris software. Each point represents an independent replicate (n=9), bars correspond to the mean of volume of microcolonies log 10 (µm 3 ) and sphericity (A.U.). A two-way ANOVA was performed to assess the effect of food stress. When a significant effect of the environment was detected, the Bonferroni multiple comparisons test was applied to evaluate the level of significance. Asterisks indicate significant differences between environments (p<0.05).

    Journal: bioRxiv

    Article Title: Spatial growth in food-like matrices differentially modulates food-related stress responses but enhances digestive tolerance in major foodborne pathogens

    doi: 10.64898/2026.03.05.710002

    Figure Lengend Snippet: Microcolonies architecture in GSFM (▴) or S-GSFM (●), after 96h at 25°C. A : Macroscopic images are obtained using an automated robot that integrates incubation and high-resolution imaging. Microscopic observations of microcolonies, endpoint stained with the cell-permeant nucleic acid dye Syto 61, are obtained with confocal laser scanning microscopy. Representative pictures correspond to the microcolonies isosurface after fluorescence segmentation using the Imaris isosurface functions. B : Quantitative parameters extracted from the isosurface of microcolonies in Imaris software. Each point represents an independent replicate (n=9), bars correspond to the mean of volume of microcolonies log 10 (µm 3 ) and sphericity (A.U.). A two-way ANOVA was performed to assess the effect of food stress. When a significant effect of the environment was detected, the Bonferroni multiple comparisons test was applied to evaluate the level of significance. Asterisks indicate significant differences between environments (p<0.05).

    Article Snippet: Raw fluorescence of each image was then binarised using the automated Imaris isosurface function.

    Techniques: Incubation, Imaging, Staining, Confocal Laser Scanning Microscopy, Fluorescence, Software