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probes for cpg loci  (INFINIUM Inc)

 
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    INFINIUM Inc probes for cpg loci
    Probes For Cpg Loci, supplied by INFINIUM Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/infiniumi+select+microarray/probe+cpg+sites/pmc04308692-136-5-2
    Average 90 stars, based on 1 article reviews
    probes for cpg loci - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    DNA Methylation Assay:

    Article Title: Quantification of DNA methylation for carcinogenic risk estimation in patients with non-alcoholic steatohepatitis
    Article Snippet: .. The DNA methylation status of not only the exact Infinium probe CpG site but also neighboring multiple CpG sites—underlined in Additional file : Table S2—affects the results of HPLC-based analysis [ ]. .. When the marker probe CpG sites identified by the Infinium assay were located within the stably controlled genomic domains wherein all CpG sites, i.e., the Infinium probe CpG site and its neighboring CpG sites, showed largely similar methylation alterations, the differences between NLTs and NASH-Ws were easy to clarify.

    Article Title: Aberrant DNA methylation results in altered gene expression in non-alcoholic steatohepatitis-related hepatocellular carcinomas
    Article Snippet: .. To identify DNA methylation alterations possibly resulting in alterations of expression, we next focused on Infinium probe CpG sites located near TSS and in CpG islands and their shores and shelves, which play an important role in expression regulation (Jones ). ..

    Article Title: Establishment of diagnostic criteria for upper urinary tract urothelial carcinoma based on genome-wide DNA methylation analysis
    Article Snippet: The AUC and cut-off values for all neighbouring CpG loci for each Infinium probe CpG site are also included in . .. When using the average DNA methylation levels at the exact Infinium probe CpG site and its neighbouring CpG loci, excellent AUC values (0.986 to 1.00) were again obtained for each of the 10 Infinium probe CpG sites ( and Figure S3). .. Using each of the 37 diagnostic criteria (the exact Infinium probe CpG sites, their neighbouring CpG sites and their average) shown in , the sensitivity for the diagnosis of UTUCs (n = 30) in all the initial cohort samples (n = 61) ranged from 86.6% to 100%, and the specificity ranged from 93.5% to 100% ( ).

    Article Title: Aberrant DNA methylation results in altered gene expression in non-alcoholic steatohepatitis-related hepatocellular carcinomas.
    Article Snippet: .. To identify DNA methylation alterations possibly resulting in alterations of expression, we next focused on Infinium probe CpG sites located near TSS and in CpG islands and their shores and shelves, which play an important role in Fig. 1 Scatterplot of the levels of mRNA expression (a) and DNA methylation (b) of the DCAF4L2, CKLF, TRIM4, PRC1, UBE2C and TUBA1B genes in samples of normal control liver tissue (C) and tumorous tissue (T). a mRNA expression levels were determined by SYBR green-based real-time quantitative PCR analysis. b DNA methylation levels were determined by Infinium assay. .. The Infinium probe ID for each gene is shown in parentheses.

    High Performance Liquid Chromatography:

    Article Title: Quantification of DNA methylation for carcinogenic risk estimation in patients with non-alcoholic steatohepatitis
    Article Snippet: .. The DNA methylation status of not only the exact Infinium probe CpG site but also neighboring multiple CpG sites—underlined in Additional file : Table S2—affects the results of HPLC-based analysis [ ]. .. When the marker probe CpG sites identified by the Infinium assay were located within the stably controlled genomic domains wherein all CpG sites, i.e., the Infinium probe CpG site and its neighboring CpG sites, showed largely similar methylation alterations, the differences between NLTs and NASH-Ws were easy to clarify.

    Expressing:

    Article Title: Aberrant DNA methylation results in altered gene expression in non-alcoholic steatohepatitis-related hepatocellular carcinomas
    Article Snippet: .. To identify DNA methylation alterations possibly resulting in alterations of expression, we next focused on Infinium probe CpG sites located near TSS and in CpG islands and their shores and shelves, which play an important role in expression regulation (Jones ). ..

    Article Title: Aberrant DNA methylation results in altered gene expression in non-alcoholic steatohepatitis-related hepatocellular carcinomas.
    Article Snippet: .. To identify DNA methylation alterations possibly resulting in alterations of expression, we next focused on Infinium probe CpG sites located near TSS and in CpG islands and their shores and shelves, which play an important role in Fig. 1 Scatterplot of the levels of mRNA expression (a) and DNA methylation (b) of the DCAF4L2, CKLF, TRIM4, PRC1, UBE2C and TUBA1B genes in samples of normal control liver tissue (C) and tumorous tissue (T). a mRNA expression levels were determined by SYBR green-based real-time quantitative PCR analysis. b DNA methylation levels were determined by Infinium assay. .. The Infinium probe ID for each gene is shown in parentheses.

    other:

    Article Title: Establishment of diagnostic criteria for upper urinary tract urothelial carcinoma based on genome-wide DNA methylation analysis
    Article Snippet: Using each of the 37 diagnostic criteria (the exact Infinium probe CpG sites, their neighbouring CpG sites and their average) shown in , the sensitivity for the diagnosis of UTUCs (n = 30) in all the initial cohort samples (n = 61) ranged from 86.6% to 100%, and the specificity ranged from 93.5% to 100% ( ).

    Control:

    Article Title: Aberrant DNA methylation results in altered gene expression in non-alcoholic steatohepatitis-related hepatocellular carcinomas.
    Article Snippet: .. To identify DNA methylation alterations possibly resulting in alterations of expression, we next focused on Infinium probe CpG sites located near TSS and in CpG islands and their shores and shelves, which play an important role in Fig. 1 Scatterplot of the levels of mRNA expression (a) and DNA methylation (b) of the DCAF4L2, CKLF, TRIM4, PRC1, UBE2C and TUBA1B genes in samples of normal control liver tissue (C) and tumorous tissue (T). a mRNA expression levels were determined by SYBR green-based real-time quantitative PCR analysis. b DNA methylation levels were determined by Infinium assay. .. The Infinium probe ID for each gene is shown in parentheses.

    Real-time Polymerase Chain Reaction:

    Article Title: Aberrant DNA methylation results in altered gene expression in non-alcoholic steatohepatitis-related hepatocellular carcinomas.
    Article Snippet: .. To identify DNA methylation alterations possibly resulting in alterations of expression, we next focused on Infinium probe CpG sites located near TSS and in CpG islands and their shores and shelves, which play an important role in Fig. 1 Scatterplot of the levels of mRNA expression (a) and DNA methylation (b) of the DCAF4L2, CKLF, TRIM4, PRC1, UBE2C and TUBA1B genes in samples of normal control liver tissue (C) and tumorous tissue (T). a mRNA expression levels were determined by SYBR green-based real-time quantitative PCR analysis. b DNA methylation levels were determined by Infinium assay. .. The Infinium probe ID for each gene is shown in parentheses.



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