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SmartGene GmbH idns web-based software
Idns Web Based Software, supplied by SmartGene GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/idns+web-based+software/idns+software/pm38955792-66-3-7
Average 90 stars, based on 1 article reviews
idns web-based software - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

Software:

Article Title: Evaluation of Cobas TaqMan MTB for Direct Detection of the Mycobacterium tuberculosis Complex in Comparison with Cobas Amplicor MTB
Article Snippet: Amplicons with CPs of >45 or maximum curve values of <0.5 by the Cobas TaqMan MTB assay were purified using a PCR purification kit (Qiagen, Hombrechtikon, Switzerland) and subjected to sequencing using the primer Mbakt-14. .. Sequences were analyzed using SmartGene IDNS software and databases (SmartGene, Zug, Switzerland). ..

Article Title: Using a Centroid-based approach for a reliable identification of morels (Morchella spp.): A case study for food authentication.
Article Snippet: For this, the IDNS web-based software of SmartGene (version v3_12_0r1(r32526)) was used as user interface. .. To perform the identification, the following steps were used: (1) ITS sequences from Dataset 1 and associated metadata (species name, strain ID, and sampling location) were uploaded within a personal IDNS cloud archive hosted by SmartGene; (2) within the IDNS software, the tool “Search similar references” was used to search the query ITS sequences against the ITS Centroid database (hosted and automatically curated by SmartGene) with a BLAST tool configured with a penalty for mismatches of -q-3(Altschul et al., 1997); (3) the search output was a list of Centroids that can be ordered by percent identity with the query (% id, related to the number of mismatches), or by BLAST score. ..

Article Title: Prosthetic Valve Endocarditis and Bloodstream Infection Due to Mycobacterium chimaera
Article Snippet: .. Sequences were analyzed using the SmartGene IDNS software and databases (SmartGene, Zug, Switzerland). ..

Article Title: Evaluation of the AID TB Resistance Line Probe Assay for Rapid Detection of Genetic Alterations Associated with Drug Resistance in Mycobacterium tuberculosis Strains
Article Snippet: Chromosomal DNA of cultured isolates was obtained using InstaGene matrix (Bio-Rad Laboratories, Hercules, CA, USA), according to the manufacturer's instructions. .. Mycobacteria were identified by 16S rRNA gene sequence analysis, as previously described ( 18 ) and analyzed using SmartGene IDNS software (SmartGene GmbH, Zug, Switzerland). ..

Article Title: Evaluation of long-read 16S rRNA next-generation sequencing for identification of bacterial isolates in a clinical diagnostic laboratory.
Article Snippet: In this study, we evaluated a clinically relevant end-to-end solution for long-read (~1,500 nt) 16S rRNA next-generation sequencing by Oxford Nanopore Technologies (ONT) compared to a ~500 nt Sanger sequencing approach for the identification of 153 bacterial clinical isolates. .. Sequencing data were analyzed using the IDNS software from SmartGene and its proprietary 16S Centroid reference database (Centroid database) SmartGene software and the Centroid database. ..

Article Title: Meningoencephalitis with Subdural Empyema Caused by Toxigenic Clostridium perfringens Type A
Article Snippet: .. PCR amplicons were sequenced (±500 bp), and homology analysis was performed using IDNS software (SmartGene, Zug, Switzerland). ..

Article Title: A deep sternal wound infection caused by Ureaplasma urealyticum.
Article Snippet: .. PCR products were detected, sequenced (±500 bp) and homology analysis was performed using IDNS software (SmartGene). ..

Sampling:

Article Title: Using a Centroid-based approach for a reliable identification of morels (Morchella spp.): A case study for food authentication.
Article Snippet: For this, the IDNS web-based software of SmartGene (version v3_12_0r1(r32526)) was used as user interface. .. To perform the identification, the following steps were used: (1) ITS sequences from Dataset 1 and associated metadata (species name, strain ID, and sampling location) were uploaded within a personal IDNS cloud archive hosted by SmartGene; (2) within the IDNS software, the tool “Search similar references” was used to search the query ITS sequences against the ITS Centroid database (hosted and automatically curated by SmartGene) with a BLAST tool configured with a penalty for mismatches of -q-3(Altschul et al., 1997); (3) the search output was a list of Centroids that can be ordered by percent identity with the query (% id, related to the number of mismatches), or by BLAST score. ..

Sequencing:

Article Title: Evaluation of the AID TB Resistance Line Probe Assay for Rapid Detection of Genetic Alterations Associated with Drug Resistance in Mycobacterium tuberculosis Strains
Article Snippet: Chromosomal DNA of cultured isolates was obtained using InstaGene matrix (Bio-Rad Laboratories, Hercules, CA, USA), according to the manufacturer's instructions. .. Mycobacteria were identified by 16S rRNA gene sequence analysis, as previously described ( 18 ) and analyzed using SmartGene IDNS software (SmartGene GmbH, Zug, Switzerland). ..

Article Title: Evaluation of long-read 16S rRNA next-generation sequencing for identification of bacterial isolates in a clinical diagnostic laboratory.
Article Snippet: In this study, we evaluated a clinically relevant end-to-end solution for long-read (~1,500 nt) 16S rRNA next-generation sequencing by Oxford Nanopore Technologies (ONT) compared to a ~500 nt Sanger sequencing approach for the identification of 153 bacterial clinical isolates. .. Sequencing data were analyzed using the IDNS software from SmartGene and its proprietary 16S Centroid reference database (Centroid database) SmartGene software and the Centroid database. ..

Polymerase Chain Reaction:

Article Title: Meningoencephalitis with Subdural Empyema Caused by Toxigenic Clostridium perfringens Type A
Article Snippet: .. PCR amplicons were sequenced (±500 bp), and homology analysis was performed using IDNS software (SmartGene, Zug, Switzerland). ..

Article Title: A deep sternal wound infection caused by Ureaplasma urealyticum.
Article Snippet: .. PCR products were detected, sequenced (±500 bp) and homology analysis was performed using IDNS software (SmartGene). ..

other:

Article Title: Using a Centroid-based approach for a reliable identification of morels (Morchella spp.): A case study for food authentication.
Article Snippet: For this, the IDNS web-based software of SmartGene (version v3_12_0r1(r32526)) was used as user interface.



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90
SmartGene GmbH idns web-based software
Idns Web Based Software, supplied by SmartGene GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/idns+web-based+software/idns+software/pm38955792-66-3-7
Average 90 stars, based on 1 article reviews
idns web-based software - by Bioz Stars, 2026-10
90/100 stars
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