rstudio ide 1.0.143 (RStudio)
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rstudio ide 1.0.143
Rstudio Ide 1.0.143, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ide-1/desktop+ide+1+0+143/pmc06970202-159-5-8
Average 90 stars, based on 1 article reviews
Rstudio Ide 1.0.143, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/ide-1/desktop+ide+1+0+143/pmc06970202-159-5-8
Average 90 stars, based on 1 article reviews
rstudio ide 1.0.143 - by Bioz Stars,
2026-11
90/100 stars
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Virus:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the Subcloning:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the Recombinant:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the Staining:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the Magnetic Beads:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the DNA Extraction:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the PCR Cloning:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the Sequencing:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the Cloning:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the Plasmid Preparation:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the Expressing:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the Software:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the Transfection:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the Polymerase Chain Reaction:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the Clone Assay:Article Title: The effect of vortioxetine on faecal microbiota in high-fat diet-exposed mice-A link to weight protection. Article Snippet: Funding information Axel Muusfeldt fonden; Region Midtjylland Abstract Objective: Weight gain is a common side effect of antidepressive treatment, causing distress among patients and caretakers as it can lead to treatment discontinuation and complications such as diabetes type II and cardiovascular disease.. Vortioxetine is one of the newer antidepressants and the pharmacodynamics differ from the selective serotonin reuptake inhibitors.. It is marketed as being weight neutral; however, there is little evidence as to why. Article Title: Detection of Marker-Free Precision Genome Editing and Genetic Variation through the Capture of Genomic Signatures Article Snippet: Article Title: Quality of life in idiopathic pulmonary fibrosis in Latin American countries. Article Snippet: Data were collected in Excel and analyzed with Article Title: Distinct Immunological Landscapes Characterize Inherited and Sporadic Mismatch Repair Deficient Endometrial Cancer Article Snippet: Statistical analyses were conducted in Article Title: CRISPR-Mediated Base Editing Enables Efficient Disruption of Eukaryotic Genes through Induction of STOP Codons Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse monoclonal anti-SMARCAL1 (A-2) Santa Cruz Cat#sc-376377; RRID: AB_10987841 Mouse monoclonal anti-GAPDH Novus Cat#NB300-221; RRID: AB_10077627 Anti-Mouse IgG, HRP-linked GE Healthcare Cat#NA931-1ML; RRID: AB_772210 Bacterial and Virus Strains Subcloning Efficiency DH5α Life Technologies Cat#18265-017 Chemicals, Peptides, and Recombinant Proteins Transfection reagent: TransIT-293 Mirus Cat#MIR 2700 Carbenicillin Goldbio Cat#C-103-25 Ouabain octahydrate Sigma Cat#03125-1G Q5 High-Fidelity DNA polymerase NEB Cat#M0491L Critical Commercial Assays Quick Extract DNA Extraction solution Epicenter Cat#QE09050 Zero BLUNT II TOPO PCR Cloning kit Life Technologies Cat#450245 SuperSignal West Pico Chemiluminescent Substrate Thermo Fisher Scientific Cat#34087 Deposited Data Unprocessed images of gels and blots This paper; Mendeley Data http://dx.doi.org/10.17632/jw5rjmypy2.1 Annotated sgSTOPs for 8 organisms and 6 PAMs This paper; Mendeley Data http://www.ciccialab-database.com/istop ; http://dx.doi.org/10.17632/xbdtvf6bvj.1 Experimental Models: Cell Lines Human: HEK293T ATCC CRL-11268 Oligonucleotides Primers for PCR This paper Table S5 Oligonucleotides for sgRNA cloning This paper Table S5 Recombinant DNA Plasmid: eSpCas9(1.1) Addgene Addgene Plasmid #71814 Plasmid: MLM3636 Addgene Addgene Plasmid #43860 Plasmid: B52 (containing 2 empty sgRNAs-expressing cassettes) This paper Available in Addgene Plasmid: B270 (containing sgRNA targeting ATP1A1 + empty sgRNA-expressing cassette) This paper Available in Addgene Plasmid: pCMV-BE3 Addgene Addgene Plasmid #73021 Software and Algorithms iSTOP R package 0.1.0 This paper https://github.com/CicciaLab/iSTOP/tree/0.1.0 iSTOP reproducible analysis 0.1.1 This paper https://github.com/CicciaLab/iSTOP-paper/tree/0.1.1 R 3.4.1 The R project for statistical computing https://www.r-project.org RStudio Article Title: Recruitment enhancement varies by taxonomic group and oyster reef habitat characteristics. Article Snippet: All analyses were conducted in R 3.6.1 (R Development Core Team, 2019) on the |
