human pdac cell line capan (ATCC)
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Human Pdac Cell Line Capan, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 1696 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 97 stars, based on 1696 article reviews
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1) Product Images from "FTO-mediated LINC01134 stabilization to promote chemoresistance through miR-140-3p/WNT5A/WNT pathway in PDAC"
Article Title: FTO-mediated LINC01134 stabilization to promote chemoresistance through miR-140-3p/WNT5A/WNT pathway in PDAC
Journal: Cell Death & Disease
doi: 10.1038/s41419-023-06244-7
Figure Legend Snippet: A Experimental procedure of the GEM-treated PDX PDAC model. B Immunoblotting assay to detect the expression of cyclin and cyclin-dependent kinases (Cyclin D1, Cyclin E, CDK2, CDK4) at the G1/S cell cycle checkpoint and cancer stem cell master genes (CD133, OCT4, NANOG, and Sox2) in tissues from the 3-generation PDX mice that treated with saline or gemcitabine. C Heatmap shows differentially expressed lncRNAs in GEM-treated and control PDX mice. D Comparison of expression of lncRNAs in tumor tissues from 36 PDAC patients with paired paracancerous tissues. E Correlation analysis of LINC01134 with cyclin and cyclin-dependent kinases and cancer stem cell master genes as described in ( B ). F Comparison of the expression of LINC01134 in tumor tissues and paired paraneoplastic tissues from 70 PDAC patients. G Kaplan–Meier analysis of the correlation between expression levels of LINC01134 and PDAC prognosis in 57 patients. Data are expressed as mean ± SD * p < 0.05, ** p < 0.01.
Techniques Used: Western Blot, Expressing, Saline, Control, Comparison
Figure Legend Snippet: A Statistical analysis of the primary and secondary sphere formation ability of PDAC cells, and representative images show secondary sphere formation in these cells. B Western blot was performed to detect the effects of silencing or overexpression of LINC01134 on the expression of the stemness-related genes. C qRT-PCR detects the effect of silencing or overexpression of LINC01134 on the expression of the stemness-related genes. D Effects of silencing LINC01134 on transplanted tumors in nude mice. Data are expressed as mean, * p < 0.05, ** p < 0.01.
Techniques Used: Western Blot, Over Expression, Expressing, Quantitative RT-PCR
Figure Legend Snippet: A Colony formation assay of cells containing silenced or overexpressed LINC01134 after GEM treatment. B Effects of different concentrations of GEM on the viability of PDAC cells. C Expression of Ki67 in xenograft tumors formed from PDAC cells transfected with Ctrl or shLINC01134 in GEM-treated nude mice. D Typical images of xenograft tumors formed from PDAC cells transfected with Ctrl or shLINC01134 in GEM-treated nude mice. Tumor growth curves of PDAC cells transfected with Ctrl or shLINC01134 in GEM-treated nude mice. E Expression of cyclin and cyclin-dependent kinases and and cancer stem cell master genes in xenograft tumor tissues formed from PDAC cells that transfected with Ctrl or shLINC01134 in GEM-treated nude mice. Data are expressed as mean, * p < 0.05, ** p < 0.01.
Techniques Used: Colony Assay, Expressing, Transfection
Figure Legend Snippet: A FISH assay detects the localization of LINC01134 in PDAC cells. B qRT-PCR detects the distribution of LINC01134 in nuclear and cytoplasm in PDAC cells. C Wayne diagram shows microRNAs predicted by the bioinformatics databases Encyclopedia of RNA Interactomes and lncRNASNP2 to target bind to LINC01134. D RNA pull-down analysis shows that miR-140-3p was highly enriched in LINC01134 precipitates. E Correlation analysis shows a significant negative correlation between LINC01134 and miR-140-3p in PDAC. F Dual-luciferase reporter assay detects the relative activity of luciferase in transfected PDAC cells. G RIP assay detects the relative enrichment of LINC01134 and miR-140-3p in anti-IgG or anti-AGO2 specific immunoprecipitates. H RNA pull-down assay was used to detect the inter-relationship between LINC01134, miR-140-3p, and AGO2. I Effects of silencing or overexpression of LINC01134 on the expression of miR-140-3p. Data are expressed as mean, * p < 0.05, ** p < 0.01.
Techniques Used: Quantitative RT-PCR, Luciferase, Reporter Assay, Activity Assay, Transfection, Pull Down Assay, Over Expression, Expressing
Figure Legend Snippet: A Heatmap and volcano map showing differentially expressed genes in PDAC after the overexpression of miR-140-3p. B KEGG pathway analysis of the major pathways associated with differentially expressed genes. C Correlation analysis shows that miR-140-3p was negatively correlated with WNT5A. D Dual-luciferase reporter analysis detects the relative activity of luciferase in post-transfected PDAC cells. E , F Effects of silencing or overexpression of miR-140-3p on the expression of WNT5A in PDAC cells. G Effects of co-transfection of LINC01134 and miR-140-3p on the expression of WNT5A in PDAC cells. Data are expressed as mean, * p < 0.05, ** p < 0.01.
Techniques Used: Over Expression, Luciferase, Activity Assay, Transfection, Expressing, Cotransfection
Figure Legend Snippet: A Correlation analysis shows that the abundance of LINC01134 was positively correlated with WNT5A. B CCK-8 analysis of the effects of silencing or overexpressing LINC01134 and overexpressing or silencing WNT5A when co-transfected on the viability of PDAC cells. C Representative phase contrast images of tumorspheres formed by PDAC cells transduced with indicated constructs or a nontarget shRNA. D Statistical analysis of the primary and secondary sphere formation ability of PDAC cells as described in ( C ). E Effects of silencing or overexpression of LINC01134 and overexpression or silencing of WNT5A on the expression of the stemness-related genes when co-transfected. Data are expressed as mean, * p < 0.05, ** p < 0.01.
Techniques Used: CCK-8 Assay, Transfection, Transduction, Construct, shRNA, Over Expression, Expressing
Figure Legend Snippet: A Silencing LINC01134 reduced the level of WNT5A and its downstream signaling activity in PDAC cells, and overexpression of LINC01134 enhanced the level of WNT5A and its downstream signaling activity in PDAC cells. B Overexpression of LINC01134 promoted the growth of transplanted tumors in PDAC nude mice and induced resistance to GEM. At the same time, the application of salinomycin effectively antagonized the pro-tumorigenic effect of LINC01134 and restored the sensitivity of transplanted tumors to GEM treatment. C IHC assays indicate the expression of Cyclin D1, Cyclin E, CDK2, CD133, Ki67, OCT4, NANOG and Sox2. Data are expressed as mean, * p < 0.05, ** p < 0.01.
Techniques Used: Activity Assay, Over Expression, Expressing
Figure Legend Snippet: A The results of MeRIP-qPCR indicate an overall lower level of m6A in BxPC-3 and PANC-1 cells than in HPDE6-C7 cells. B Analysis of the expression of FTO in PDAC using the GEPIA database. C Correlation analysis shows that the expression of FTO was significantly and positively correlated with the abundance of LINC01134. D Effects of silencing FTO on the expression of LINC01134. E Effects of overexpression of FTO on the expression of LINC01134. F An online engine ( http://m6avar.renlab.org/ ) can be used to predict the m6A modification site of LINC01134 and the prediction was confirmed by a luciferase analysis report. G Effects of silencing or overexpression of FTO on the degree of m6A enrichment of LINC01134. H Effects of silencing or overexpression of FTO on the stability of LINC01134 in the presence of radio-luciferin D. I RIP assay confirms the binding between YTHDF2 and LINC01134. J Effects of silencing YTHDF2 on the expression of LINC01134. K Effects of silencing YTHDF2 on the stability of LINC01134 in the presence of radio-labeled D. L RIP experiments confirm the effects of silencing FTO on the expression of YTHDF2. Data are expressed as mean, * p < 0.05, ** p < 0.01.
Techniques Used: Expressing, Over Expression, Modification, Luciferase, Binding Assay, Labeling
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