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circrna scarb1  (Addgene inc)


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    Structured Review

    Addgene inc circrna scarb1
    The expression of circRNA <t>SCARB1,</t> mature miR-497 and miR-497 precursor was altered in HCC. HCC and paired non-tumor tissues were collected from the 64 HCC patients included in this study, and the expression of circRNA SCARB1 ( A ), mature miR-497 ( B ) and miR-497 precursor ( C ) in these tissue samples was determined by RT-qPCR. Average values of three technical replicates were used to express gene expression data in paired HCC and non-tumor tissues, ** p < 0.01.
    Circrna Scarb1, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 23 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/human+circrna+array+analysis/pcDNA3%2E1(%2B)+CircRNA+Mini+Vector-ZKSCAN1+nt+548-1047+(Plasmid+%2360649)/pmc08292958-69-2-8
    Average 93 stars, based on 23 article reviews
    circrna scarb1 - by Bioz Stars, 2026-10
    93/100 stars

    Images

    1) Product Images from "The Maturation of Tumor Suppressor miR-497 in Hepatocellular Carcinoma is Inhibited by Oncogenic circRNA SCARB1"

    Article Title: The Maturation of Tumor Suppressor miR-497 in Hepatocellular Carcinoma is Inhibited by Oncogenic circRNA SCARB1

    Journal: Cancer Management and Research

    doi: 10.2147/CMAR.S304125

    The expression of circRNA SCARB1, mature miR-497 and miR-497 precursor was altered in HCC. HCC and paired non-tumor tissues were collected from the 64 HCC patients included in this study, and the expression of circRNA SCARB1 ( A ), mature miR-497 ( B ) and miR-497 precursor ( C ) in these tissue samples was determined by RT-qPCR. Average values of three technical replicates were used to express gene expression data in paired HCC and non-tumor tissues, ** p < 0.01.
    Figure Legend Snippet: The expression of circRNA SCARB1, mature miR-497 and miR-497 precursor was altered in HCC. HCC and paired non-tumor tissues were collected from the 64 HCC patients included in this study, and the expression of circRNA SCARB1 ( A ), mature miR-497 ( B ) and miR-497 precursor ( C ) in these tissue samples was determined by RT-qPCR. Average values of three technical replicates were used to express gene expression data in paired HCC and non-tumor tissues, ** p < 0.01.

    Techniques Used: Expressing, Quantitative RT-PCR, Gene Expression

    The Correlations Between Clinicopathological Variables and the Expression of  circRNA SCARB1  in HCC
    Figure Legend Snippet: The Correlations Between Clinicopathological Variables and the Expression of circRNA SCARB1 in HCC

    Techniques Used: Expressing, Infection

    CircRNA SCARB1 and mature miR-497 were inversely correlated across HCC samples. Pearson’s correlation coefficient analysis was used to analyze the correlations between circRNA SCARB1 and mature miR-497 ( A ) or miR-497 precursor ( B ) across HCC tissue samples.
    Figure Legend Snippet: CircRNA SCARB1 and mature miR-497 were inversely correlated across HCC samples. Pearson’s correlation coefficient analysis was used to analyze the correlations between circRNA SCARB1 and mature miR-497 ( A ) or miR-497 precursor ( B ) across HCC tissue samples.

    Techniques Used:

    Overexpression of circRNA SCARB1 downregulated mature miR-497 in HCC cells. To explore the effects of overexpression of circRNA SCARB1 on the maturation of miR-497, SNU-423 and SNU-387 cells were transfected with either circRNA SCARB1 expression vector or miR-497 mimic, followed by the confirmation of transfections at 48 h post-transfection by RT-qPCR ( A ). The effects of overexpression of circRNA SCARB1 of the expression of mature miR-497 ( B ) and miR-497 precursor ( C ), as well as the effects of the transfection of miR-497 mimic on circRNA SCARB1 expression ( D ) were also analyzed by RT-qPCR. Mean ± SD values were used to express data of 3 biological replicates of in vitro cell experiments. * p < 0.05.
    Figure Legend Snippet: Overexpression of circRNA SCARB1 downregulated mature miR-497 in HCC cells. To explore the effects of overexpression of circRNA SCARB1 on the maturation of miR-497, SNU-423 and SNU-387 cells were transfected with either circRNA SCARB1 expression vector or miR-497 mimic, followed by the confirmation of transfections at 48 h post-transfection by RT-qPCR ( A ). The effects of overexpression of circRNA SCARB1 of the expression of mature miR-497 ( B ) and miR-497 precursor ( C ), as well as the effects of the transfection of miR-497 mimic on circRNA SCARB1 expression ( D ) were also analyzed by RT-qPCR. Mean ± SD values were used to express data of 3 biological replicates of in vitro cell experiments. * p < 0.05.

    Techniques Used: Over Expression, Transfection, Expressing, Plasmid Preparation, Quantitative RT-PCR, In Vitro

    Overexpression of circRNA SCARB1 increased HCC cell proliferation through miR-497. CCK-8 assay was performed to analyze the effects of overexpression of circRNA SCARB1 and miR-497 on the proliferation of SNU-423 ( A ) and SNU-387 cells ( B ). Mean ± SD values were used to express data of three biological replicates of in vitro cell experiments. * p < 0.05.
    Figure Legend Snippet: Overexpression of circRNA SCARB1 increased HCC cell proliferation through miR-497. CCK-8 assay was performed to analyze the effects of overexpression of circRNA SCARB1 and miR-497 on the proliferation of SNU-423 ( A ) and SNU-387 cells ( B ). Mean ± SD values were used to express data of three biological replicates of in vitro cell experiments. * p < 0.05.

    Techniques Used: Over Expression, CCK-8 Assay, In Vitro

    Overexpression of circRNA SCARB1 increased HCC cell migration through miR-497. Transwell assay was conducted to analyze the effects of overexpression of circRNA SCARB1 and miR-497 on the migration of SNU-423 ( A and C ) and SNU-387 cells ( B and D ). Mean ± SD values were used to express data of three biological replicates of in vitro cell experiments. * p < 0.05.
    Figure Legend Snippet: Overexpression of circRNA SCARB1 increased HCC cell migration through miR-497. Transwell assay was conducted to analyze the effects of overexpression of circRNA SCARB1 and miR-497 on the migration of SNU-423 ( A and C ) and SNU-387 cells ( B and D ). Mean ± SD values were used to express data of three biological replicates of in vitro cell experiments. * p < 0.05.

    Techniques Used: Over Expression, Migration, Transwell Assay, In Vitro

    Related Articles

    Over Expression:

    Article Title: CircHAT1 regulates the proliferation and phenotype switch of vascular smooth muscle cells in lower extremity arteriosclerosis obliterans through targeting SFRS1.
    Article Snippet: This study aimed to decipher the mechanism of circular ribonucleic acids (circRNAs) in lower extremity arteriosclerosis obliterans (LEASO).. First, bioinformatics analysis was performed for screening significantly down-regulated cardiac specific circRNA—circHAT1 in LEASO.. The expression of circHAT1 in LEASO clinical samples was detected by quantitative real-time polymerase chain reaction (qRT-PCR).

    Article Title: A tripartite circRNA/mRNA/miRNA interaction regulates glutamatergic signaling in the mouse brain.
    Article Snippet: All the mutant constructs were obtained by inverse PCR followed by phosphorylation with T4 Polynucleotide Kinase (New England Biolabs) and self-ligation of the PCR product with T4 DNA ligase (New England Biolabs). .. For the circDlc1(2) overexpression the circDlc1(2) sequence was cloned in the circRNA mini vector ZKSCAN1,43 addgene #60649, via the In-fusion strategy. .. N2a cells were harvested and lysed 48 h after transfection, and Renilla luciferase (RLuc) and Firefly luciferase (FLuc) activities were measured by Dual-Luciferase Reporter Assay System (Promega) (50 mL per injector, 2 s delay, speed 200 mL/s).

    Article Title: CircRNA circ_0006892 regulates miR-24/PHLPP2 axis to mitigate cigarette smoke extract-induced bronchial epithelial cell injury.
    Article Snippet: ChenyingZhang andShuangshuangGu contributed equally to iswork.. Abstract Chronic obstructive pulmonary disease (COPD) is a chronic airway disorder mainly resulted from cigarette smoke exposure.. The dysregulated circular RNAs (circRNAs) are relevant to the pathogenesis of COPD.

    Article Title: Hsa_circ_0003204 Knockdown Weakens Ox-LDL-Induced Cell Injury by Regulating miR-188-3p/TRPC6 Axis in Human Carotid Artery Endothelial Cells and THP-1 Cells
    Article Snippet: The Magna RIP Kit (Sigma, St. Louis, MO, USA) was exploited for RIP analysis; 1 × 10 7 HCtAECs and THP-1 cells were lysed and interacted with anti-Ago2 or anti-IgG-conjugated magnetic beads for 6 h. The enrichment of circ_0003204, miR-188-3p, and TRPC6 in the complex was detected by qRT-PCR. .. Circ_0003204 overexpression vector was synthesized by cloning circ_0003204 sequence into pcDNA3.1 circRNA mini vector, with the pcDNA3.1 circRNA mini vector (Addgene, Cambridge, MA, USA) as negative control (vector). .. TRPC6 overexpression vector was generated via inserting the full length of TRPC6 (accession: NM_004621.6) sequence into pcDNA3.1 vector, with the pcDNA3.1 vector (Addgene) as negative control (pcDNA).

    Plasmid Preparation:

    Article Title: CircHAT1 regulates the proliferation and phenotype switch of vascular smooth muscle cells in lower extremity arteriosclerosis obliterans through targeting SFRS1.
    Article Snippet: This study aimed to decipher the mechanism of circular ribonucleic acids (circRNAs) in lower extremity arteriosclerosis obliterans (LEASO).. First, bioinformatics analysis was performed for screening significantly down-regulated cardiac specific circRNA—circHAT1 in LEASO.. The expression of circHAT1 in LEASO clinical samples was detected by quantitative real-time polymerase chain reaction (qRT-PCR).

    Article Title: Hsa_circ_0003204 Knockdown Weakens Ox-LDL-Induced Cell Injury by Regulating miR-188-3p/TRPC6 Axis in Human Carotid Artery Endothelial Cells and THP-1 Cells
    Article Snippet: The Magna RIP Kit (Sigma, St. Louis, MO, USA) was exploited for RIP analysis; 1 × 10 7 HCtAECs and THP-1 cells were lysed and interacted with anti-Ago2 or anti-IgG-conjugated magnetic beads for 6 h. The enrichment of circ_0003204, miR-188-3p, and TRPC6 in the complex was detected by qRT-PCR. .. Circ_0003204 overexpression vector was synthesized by cloning circ_0003204 sequence into pcDNA3.1 circRNA mini vector, with the pcDNA3.1 circRNA mini vector (Addgene, Cambridge, MA, USA) as negative control (vector). .. TRPC6 overexpression vector was generated via inserting the full length of TRPC6 (accession: NM_004621.6) sequence into pcDNA3.1 vector, with the pcDNA3.1 vector (Addgene) as negative control (pcDNA).

    Article Title: A virus-induced circular RNA maintains latent infection of Kaposi sarcoma herpesvirus
    Article Snippet: 2 μg pcDNA3.1- hsa_circ_0001400 of plasmids was transfected to 2×10 6 cells with 12 μl Transporter 5 (Polysciences) lipofection reagent and 1 ml Opti-MemI in 10 ml DMEM. .. For primary endothelial cells, lentiviral vectors were used. pcDNA3.1-has_circ_0001400 and pcDNA3.1(+) ZKSCAN1 MCS-WT Split GFP + Sense IRES (Addgene plasmid # 69909) were digested with BamHI and XhoI (NEB) and cloned into pLV-mCHerry:T2A:Bsd-CMV plasmid (VectorBuilder). .. VSV-G pseudotyping and packaging was performed by VectorBuilder.

    Construct:

    Article Title: CircHAT1 regulates the proliferation and phenotype switch of vascular smooth muscle cells in lower extremity arteriosclerosis obliterans through targeting SFRS1.
    Article Snippet: This study aimed to decipher the mechanism of circular ribonucleic acids (circRNAs) in lower extremity arteriosclerosis obliterans (LEASO).. First, bioinformatics analysis was performed for screening significantly down-regulated cardiac specific circRNA—circHAT1 in LEASO.. The expression of circHAT1 in LEASO clinical samples was detected by quantitative real-time polymerase chain reaction (qRT-PCR).

    Control:

    Article Title: CircHAT1 regulates the proliferation and phenotype switch of vascular smooth muscle cells in lower extremity arteriosclerosis obliterans through targeting SFRS1.
    Article Snippet: This study aimed to decipher the mechanism of circular ribonucleic acids (circRNAs) in lower extremity arteriosclerosis obliterans (LEASO).. First, bioinformatics analysis was performed for screening significantly down-regulated cardiac specific circRNA—circHAT1 in LEASO.. The expression of circHAT1 in LEASO clinical samples was detected by quantitative real-time polymerase chain reaction (qRT-PCR).

    Sequencing:

    Article Title: Targeting the Exonic Circular OGT RNA/O-GlcNAc Transferase/Forkhead Box C1 Axis Inhibits Asparagine- and Alanine-Mediated Ferroptosis Repression in Neuroblastoma Progression
    Article Snippet: .. The OGT-570aa-3Flag sequence (Table ) was inserted into pcDNA3.1-mini or pGEX-6P-1 (Addgene) through subcloning. .. The QuikChange II Site-Directed Mutagenesis Kit (Agilent, Santa Clara, CA) was used along with primers (Table ) to induce mutations in FOXC1 , OGT , or ecircOGT constructs.

    Article Title: A tripartite circRNA/mRNA/miRNA interaction regulates glutamatergic signaling in the mouse brain.
    Article Snippet: All the mutant constructs were obtained by inverse PCR followed by phosphorylation with T4 Polynucleotide Kinase (New England Biolabs) and self-ligation of the PCR product with T4 DNA ligase (New England Biolabs). .. For the circDlc1(2) overexpression the circDlc1(2) sequence was cloned in the circRNA mini vector ZKSCAN1,43 addgene #60649, via the In-fusion strategy. .. N2a cells were harvested and lysed 48 h after transfection, and Renilla luciferase (RLuc) and Firefly luciferase (FLuc) activities were measured by Dual-Luciferase Reporter Assay System (Promega) (50 mL per injector, 2 s delay, speed 200 mL/s).

    Article Title: Hsa_circ_0003204 Knockdown Weakens Ox-LDL-Induced Cell Injury by Regulating miR-188-3p/TRPC6 Axis in Human Carotid Artery Endothelial Cells and THP-1 Cells
    Article Snippet: The Magna RIP Kit (Sigma, St. Louis, MO, USA) was exploited for RIP analysis; 1 × 10 7 HCtAECs and THP-1 cells were lysed and interacted with anti-Ago2 or anti-IgG-conjugated magnetic beads for 6 h. The enrichment of circ_0003204, miR-188-3p, and TRPC6 in the complex was detected by qRT-PCR. .. Circ_0003204 overexpression vector was synthesized by cloning circ_0003204 sequence into pcDNA3.1 circRNA mini vector, with the pcDNA3.1 circRNA mini vector (Addgene, Cambridge, MA, USA) as negative control (vector). .. TRPC6 overexpression vector was generated via inserting the full length of TRPC6 (accession: NM_004621.6) sequence into pcDNA3.1 vector, with the pcDNA3.1 vector (Addgene) as negative control (pcDNA).

    Subcloning:

    Article Title: Targeting the Exonic Circular OGT RNA/O-GlcNAc Transferase/Forkhead Box C1 Axis Inhibits Asparagine- and Alanine-Mediated Ferroptosis Repression in Neuroblastoma Progression
    Article Snippet: .. The OGT-570aa-3Flag sequence (Table ) was inserted into pcDNA3.1-mini or pGEX-6P-1 (Addgene) through subcloning. .. The QuikChange II Site-Directed Mutagenesis Kit (Agilent, Santa Clara, CA) was used along with primers (Table ) to induce mutations in FOXC1 , OGT , or ecircOGT constructs.

    Clone Assay:

    Article Title: A tripartite circRNA/mRNA/miRNA interaction regulates glutamatergic signaling in the mouse brain.
    Article Snippet: All the mutant constructs were obtained by inverse PCR followed by phosphorylation with T4 Polynucleotide Kinase (New England Biolabs) and self-ligation of the PCR product with T4 DNA ligase (New England Biolabs). .. For the circDlc1(2) overexpression the circDlc1(2) sequence was cloned in the circRNA mini vector ZKSCAN1,43 addgene #60649, via the In-fusion strategy. .. N2a cells were harvested and lysed 48 h after transfection, and Renilla luciferase (RLuc) and Firefly luciferase (FLuc) activities were measured by Dual-Luciferase Reporter Assay System (Promega) (50 mL per injector, 2 s delay, speed 200 mL/s).

    Article Title: A virus-induced circular RNA maintains latent infection of Kaposi sarcoma herpesvirus
    Article Snippet: 2 μg pcDNA3.1- hsa_circ_0001400 of plasmids was transfected to 2×10 6 cells with 12 μl Transporter 5 (Polysciences) lipofection reagent and 1 ml Opti-MemI in 10 ml DMEM. .. For primary endothelial cells, lentiviral vectors were used. pcDNA3.1-has_circ_0001400 and pcDNA3.1(+) ZKSCAN1 MCS-WT Split GFP + Sense IRES (Addgene plasmid # 69909) were digested with BamHI and XhoI (NEB) and cloned into pLV-mCHerry:T2A:Bsd-CMV plasmid (VectorBuilder). .. VSV-G pseudotyping and packaging was performed by VectorBuilder.

    other:

    Article Title: A tripartite circRNA/mRNA/miRNA interaction regulates glutamatergic signaling in the mouse brain.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Organisms/strains Mouse C57BL/6J WT This paper N/A Mouse C57BL/6J, circDlc1(2) / This paper N/A Mouse C57BL/6J, Dlc1-206 / This paper N/A Mouse C57BL/6J WT mESCs This paper N/A Mouse C57BL/6J, circDlc1(2) / mESCs This paper N/A Mouse C57BL/6J, Dlc1-206 / mESCs This paper N/A Mouse C57BL/6J, circDlc1(2) / Rescue mESCs This paper N/A Oligonucleotides Oligonucleotides used for the genotyping in this work are listed in Table S2 This paper N/A Oligonucleotides for qPCR experiments in this work are listed in Table S2 This paper N/A Oligonucleotides for miRNA qPCR experiments in this work are listed in Table S3 Qiagen cat# 339306 Oligonucleotides for plasmid construction are listed in Table S2 This paper N/A siRNAs used in this work are listed in Table S2 This paper N/A DNA oligonucleotide probes are listed in Table S2 This paper N/A miRCURY LNA miRNA Detection Probes mmu-miR-130b-5p mmu-miR-132-3p EXIQON cat# YD00615959-BCG YD00615938-BCG Mm circ-Dlc1-specific probe for BaseScopeTM ACD cat# 708481 Recombinant DNA circDlc1(2) overexpression vector This paper N/A circDlc1(2) D130 overexpression vector This paper N/A psiCHECKTM-2 Vector Promega cat# C8021 ZKSCAN1 Kramer et al., 201543 Addgene plasmid #60649 pcDNATM3.1 (+) Mammalian Expression Vector Thermo Fisher Scientific cat# V79020 circDlc1(2)-WT This paper N/A circDlc1(2)-mut This paper N/A Gria1-WT-S This paper N/A Gria1-mut-S This paper N/A Gria1-WT-L This paper N/A Gria1-mut-L This paper N/A Gria1-DmiR This paper N/A Grin2a-WT This paper N/A Grin2a-mut This paper N/A Software and algorithms ImageJ software Schneider et al., 201244 RRID:SCR_003070; https://imagej.nih.gov/ij/download.html MetaMorph Microscopy Automation and Image Analysis Software Molecular Devices RRID:SCR_002368; https://www.moleculardevices.com/ products/cellular-imagingsystems/ acquisitionand-analysissoftware/ metamorph-microscopy#gref ImageJ ‘‘3D viewer’’ plugin Benjamin Schmid; ImageJ_3D_Viewer.jar https://imagej.nih.gov/ij/plugins/ 3dviewer/ ImageJ ‘‘plot profile’’ plugin N/A https://imagej.net/ij/ij/docs/guide/ 146-30.html#toc-Subsection-30.11 (Continued on next page) 20 Cell Reports 43, 114766, October 22, 2024

    Negative Control:

    Article Title: CircRNA circ_0006892 regulates miR-24/PHLPP2 axis to mitigate cigarette smoke extract-induced bronchial epithelial cell injury.
    Article Snippet: ChenyingZhang andShuangshuangGu contributed equally to iswork.. Abstract Chronic obstructive pulmonary disease (COPD) is a chronic airway disorder mainly resulted from cigarette smoke exposure.. The dysregulated circular RNAs (circRNAs) are relevant to the pathogenesis of COPD.

    Article Title: Hsa_circ_0003204 Knockdown Weakens Ox-LDL-Induced Cell Injury by Regulating miR-188-3p/TRPC6 Axis in Human Carotid Artery Endothelial Cells and THP-1 Cells
    Article Snippet: The Magna RIP Kit (Sigma, St. Louis, MO, USA) was exploited for RIP analysis; 1 × 10 7 HCtAECs and THP-1 cells were lysed and interacted with anti-Ago2 or anti-IgG-conjugated magnetic beads for 6 h. The enrichment of circ_0003204, miR-188-3p, and TRPC6 in the complex was detected by qRT-PCR. .. Circ_0003204 overexpression vector was synthesized by cloning circ_0003204 sequence into pcDNA3.1 circRNA mini vector, with the pcDNA3.1 circRNA mini vector (Addgene, Cambridge, MA, USA) as negative control (vector). .. TRPC6 overexpression vector was generated via inserting the full length of TRPC6 (accession: NM_004621.6) sequence into pcDNA3.1 vector, with the pcDNA3.1 vector (Addgene) as negative control (pcDNA).

    Synthesized:

    Article Title: Hsa_circ_0003204 Knockdown Weakens Ox-LDL-Induced Cell Injury by Regulating miR-188-3p/TRPC6 Axis in Human Carotid Artery Endothelial Cells and THP-1 Cells
    Article Snippet: The Magna RIP Kit (Sigma, St. Louis, MO, USA) was exploited for RIP analysis; 1 × 10 7 HCtAECs and THP-1 cells were lysed and interacted with anti-Ago2 or anti-IgG-conjugated magnetic beads for 6 h. The enrichment of circ_0003204, miR-188-3p, and TRPC6 in the complex was detected by qRT-PCR. .. Circ_0003204 overexpression vector was synthesized by cloning circ_0003204 sequence into pcDNA3.1 circRNA mini vector, with the pcDNA3.1 circRNA mini vector (Addgene, Cambridge, MA, USA) as negative control (vector). .. TRPC6 overexpression vector was generated via inserting the full length of TRPC6 (accession: NM_004621.6) sequence into pcDNA3.1 vector, with the pcDNA3.1 vector (Addgene) as negative control (pcDNA).

    Cloning:

    Article Title: Hsa_circ_0003204 Knockdown Weakens Ox-LDL-Induced Cell Injury by Regulating miR-188-3p/TRPC6 Axis in Human Carotid Artery Endothelial Cells and THP-1 Cells
    Article Snippet: The Magna RIP Kit (Sigma, St. Louis, MO, USA) was exploited for RIP analysis; 1 × 10 7 HCtAECs and THP-1 cells were lysed and interacted with anti-Ago2 or anti-IgG-conjugated magnetic beads for 6 h. The enrichment of circ_0003204, miR-188-3p, and TRPC6 in the complex was detected by qRT-PCR. .. Circ_0003204 overexpression vector was synthesized by cloning circ_0003204 sequence into pcDNA3.1 circRNA mini vector, with the pcDNA3.1 circRNA mini vector (Addgene, Cambridge, MA, USA) as negative control (vector). .. TRPC6 overexpression vector was generated via inserting the full length of TRPC6 (accession: NM_004621.6) sequence into pcDNA3.1 vector, with the pcDNA3.1 vector (Addgene) as negative control (pcDNA).



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