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rcutsmart buffer  (New England Biolabs)


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    Structured Review

    New England Biolabs rcutsmart buffer
    Rcutsmart Buffer, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 97/100, based on 901 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/hf+buffer/AgeI-HF/pmc13125632-250-30-32
    Average 97 stars, based on 901 article reviews
    rcutsmart buffer - by Bioz Stars, 2026-11
    97/100 stars

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    Related Articles

    Amplification:

    Article Title: Modeling Protein Diffusion Across ER-Nuclear Envelope Junctions Reveals Efficient Transport via Simple Diffusion.
    Article Snippet: .. The amplified fragment was then inserted into the moxGFP-KDEL plasmid using AgeI (New England Biolabs). .. Subsequently, a second moxGFP fragment was amplified from moxGFP-KDEL by PCR using the primers 5′-AGGAAGCTTGGATCCAGTGTCCAAGGGCGAGGAGCTG-3′ (forward) and 5′-TAGAAGCTTGCCTTGTACAGCTCGTCCATGCCGT-3′ (reverse), and inserted between the HA-NusA and moxGFP-KDEL sequence using HindIII (New England Biolabs).

    Article Title: A massively parallel reporter assay of MECP2cis-regulatory elements reveals genetic candidates for male-biased autism.
    Article Snippet: .. The amplicon was then cloned into the vector pLS-SceI (Addgene 137725), prepared by linearizing with AgeI-HF (NEB R3552S) and SbfI-HF (NEB R3642S). .. The recombination reaction was performed using NEBuilder HiFi DNA Assembly Master Mix (NEB E2621L) at 50◦C for 60 min. To remove any non-recombined vector, the reaction was digested with I-SceI (NEB R0694S) before purification with 1.8 vol of HighPrep PCR magnetic beads (Magbio Genomics AC-60050).

    Article Title: TRAM promotes Toll-like-receptor-free myddosome signal transduction.
    Article Snippet: .. For this, pLentiCRISPR-v2 was digested with AgeI-HF (R3552, NEB) and BamHI-HF, the activator ORF amplified from pXPR_502 using Q5 polymerase and Gibson assembly performed to obtain an intermediate plasmid now expressing the MS2-P65-HSF1 activator complex from an EF1α promoter. ..

    Plasmid Preparation:

    Article Title: Modeling Protein Diffusion Across ER-Nuclear Envelope Junctions Reveals Efficient Transport via Simple Diffusion.
    Article Snippet: .. The amplified fragment was then inserted into the moxGFP-KDEL plasmid using AgeI (New England Biolabs). .. Subsequently, a second moxGFP fragment was amplified from moxGFP-KDEL by PCR using the primers 5′-AGGAAGCTTGGATCCAGTGTCCAAGGGCGAGGAGCTG-3′ (forward) and 5′-TAGAAGCTTGCCTTGTACAGCTCGTCCATGCCGT-3′ (reverse), and inserted between the HA-NusA and moxGFP-KDEL sequence using HindIII (New England Biolabs).

    Article Title: A massively parallel reporter assay of MECP2cis-regulatory elements reveals genetic candidates for male-biased autism.
    Article Snippet: .. The amplicon was then cloned into the vector pLS-SceI (Addgene 137725), prepared by linearizing with AgeI-HF (NEB R3552S) and SbfI-HF (NEB R3642S). .. The recombination reaction was performed using NEBuilder HiFi DNA Assembly Master Mix (NEB E2621L) at 50◦C for 60 min. To remove any non-recombined vector, the reaction was digested with I-SceI (NEB R0694S) before purification with 1.8 vol of HighPrep PCR magnetic beads (Magbio Genomics AC-60050).

    Article Title: Mitotic bypass and continued endocycling promote cancer cell survival after genotoxic chemotherapy
    Article Snippet: For inducible p21 overexpression, Gateway donor pDONR223_CDKN1A_WT (a gift from Jesse Boehm & William Hahn & David Root; Addgene plasmid #82201) was recombined with Gateway destination pLIX_403 (a gift from David Root; Addgene plasmid #41395) using Gateway LR Clonase II (Invitrogen #11791020) to generate the CDKN1A expression clone. .. For inducible p21 knockdown, Tet-pLKO-Neo [59] (a gift from Dmitri Wiederschain; Addgene plasmid # 21916) was digested with AgeI (New England Biolabs R3552) and EcoR1 (New England Biolabs R3101), then scrambled or CDKN1A-targeting shRNA were inserted using Instant Sticky-end Ligase Master Mix (New England Biolabs M0370) all according to manufacturer’s protocol. ..

    Article Title: TRAM promotes Toll-like-receptor-free myddosome signal transduction.
    Article Snippet: .. For this, pLentiCRISPR-v2 was digested with AgeI-HF (R3552, NEB) and BamHI-HF, the activator ORF amplified from pXPR_502 using Q5 polymerase and Gibson assembly performed to obtain an intermediate plasmid now expressing the MS2-P65-HSF1 activator complex from an EF1α promoter. ..

    Article Title: Harnessing glucocorticoid receptor antagonism to enhance the efficacy of cardiac regenerative growth factors and cytokines.
    Article Snippet: Myocardial injuries lead to cardiomyocyte loss and heart failure.. Endogenous glucocorticoids, via the glucocorticoid receptor (GR), limit cardiomyocyte regeneration.. Here we show that glucocorticoids suppress mammalian (murine) cardiomyocyte proliferative response to regenerative growth factors and cytokines.

    Clone Assay:

    Article Title: A massively parallel reporter assay of MECP2cis-regulatory elements reveals genetic candidates for male-biased autism.
    Article Snippet: .. The amplicon was then cloned into the vector pLS-SceI (Addgene 137725), prepared by linearizing with AgeI-HF (NEB R3552S) and SbfI-HF (NEB R3642S). .. The recombination reaction was performed using NEBuilder HiFi DNA Assembly Master Mix (NEB E2621L) at 50◦C for 60 min. To remove any non-recombined vector, the reaction was digested with I-SceI (NEB R0694S) before purification with 1.8 vol of HighPrep PCR magnetic beads (Magbio Genomics AC-60050).

    Article Title: CircACVR2A(2-4) regulates stem cell pluripotency by uncoupling CDK-activating kinase functions.
    Article Snippet: .. Short hairpin RNA and circRNA overexpression constructs All human RNA-targeting shRNAs were cloned into pLKO.1puro (Addgene, #8453), which was sequentially digested with Eco RI-HF and Age I-HF (New England Biolabs, Ipswich, MA, USA) in 1 × CutSmart buffer at 37◦C for 1 h and gel- academ ic.oup.com /nar/article/54/19/gkag964/8913154 by guest on 19 O ctober 2026 ..

    Knockdown:

    Article Title: Mitotic bypass and continued endocycling promote cancer cell survival after genotoxic chemotherapy
    Article Snippet: For inducible p21 overexpression, Gateway donor pDONR223_CDKN1A_WT (a gift from Jesse Boehm & William Hahn & David Root; Addgene plasmid #82201) was recombined with Gateway destination pLIX_403 (a gift from David Root; Addgene plasmid #41395) using Gateway LR Clonase II (Invitrogen #11791020) to generate the CDKN1A expression clone. .. For inducible p21 knockdown, Tet-pLKO-Neo [59] (a gift from Dmitri Wiederschain; Addgene plasmid # 21916) was digested with AgeI (New England Biolabs R3552) and EcoR1 (New England Biolabs R3101), then scrambled or CDKN1A-targeting shRNA were inserted using Instant Sticky-end Ligase Master Mix (New England Biolabs M0370) all according to manufacturer’s protocol. ..

    shRNA:

    Article Title: Mitotic bypass and continued endocycling promote cancer cell survival after genotoxic chemotherapy
    Article Snippet: For inducible p21 overexpression, Gateway donor pDONR223_CDKN1A_WT (a gift from Jesse Boehm & William Hahn & David Root; Addgene plasmid #82201) was recombined with Gateway destination pLIX_403 (a gift from David Root; Addgene plasmid #41395) using Gateway LR Clonase II (Invitrogen #11791020) to generate the CDKN1A expression clone. .. For inducible p21 knockdown, Tet-pLKO-Neo [59] (a gift from Dmitri Wiederschain; Addgene plasmid # 21916) was digested with AgeI (New England Biolabs R3552) and EcoR1 (New England Biolabs R3101), then scrambled or CDKN1A-targeting shRNA were inserted using Instant Sticky-end Ligase Master Mix (New England Biolabs M0370) all according to manufacturer’s protocol. ..

    Article Title: CircACVR2A(2-4) regulates stem cell pluripotency by uncoupling CDK-activating kinase functions.
    Article Snippet: .. Short hairpin RNA and circRNA overexpression constructs All human RNA-targeting shRNAs were cloned into pLKO.1puro (Addgene, #8453), which was sequentially digested with Eco RI-HF and Age I-HF (New England Biolabs, Ipswich, MA, USA) in 1 × CutSmart buffer at 37◦C for 1 h and gel- academ ic.oup.com /nar/article/54/19/gkag964/8913154 by guest on 19 O ctober 2026 ..

    Construct:

    Article Title: Systematic mapping of enhancers, silencers, and topological elements with prime editing deletion screens
    Article Snippet: .. To clone the downstream lentiMPRA construct, we first digested the lentiviral backbone ( table S4 ) with AgeI (NEB #R3552) and EcoRI (NEB #R3101), followed by gel purification. .. We then prepared four other fragments for a Gibson assembly reaction: (1) we amplified the promoter fragments to add Gibson assembly handles, using 30 μL of Q5 High-Fidelity 2X Master Mix (New England Biolabs #M0492L), 0.5 uM of each primer, and 1 ng of the gene fragment in a 60 μL reaction (98°C for 30 seconds, and 11 cycles of 98°C for 15 seconds, 66°C for 15 seconds, 72°C for 60 seconds, followed by a final 72°C extension for 2 minutes).

    Article Title: CircACVR2A(2-4) regulates stem cell pluripotency by uncoupling CDK-activating kinase functions.
    Article Snippet: .. Short hairpin RNA and circRNA overexpression constructs All human RNA-targeting shRNAs were cloned into pLKO.1puro (Addgene, #8453), which was sequentially digested with Eco RI-HF and Age I-HF (New England Biolabs, Ipswich, MA, USA) in 1 × CutSmart buffer at 37◦C for 1 h and gel- academ ic.oup.com /nar/article/54/19/gkag964/8913154 by guest on 19 O ctober 2026 ..

    Gel Purification:

    Article Title: Systematic mapping of enhancers, silencers, and topological elements with prime editing deletion screens
    Article Snippet: .. To clone the downstream lentiMPRA construct, we first digested the lentiviral backbone ( table S4 ) with AgeI (NEB #R3552) and EcoRI (NEB #R3101), followed by gel purification. .. We then prepared four other fragments for a Gibson assembly reaction: (1) we amplified the promoter fragments to add Gibson assembly handles, using 30 μL of Q5 High-Fidelity 2X Master Mix (New England Biolabs #M0492L), 0.5 uM of each primer, and 1 ng of the gene fragment in a 60 μL reaction (98°C for 30 seconds, and 11 cycles of 98°C for 15 seconds, 66°C for 15 seconds, 72°C for 60 seconds, followed by a final 72°C extension for 2 minutes).

    Expressing:

    Article Title: TRAM promotes Toll-like-receptor-free myddosome signal transduction.
    Article Snippet: .. For this, pLentiCRISPR-v2 was digested with AgeI-HF (R3552, NEB) and BamHI-HF, the activator ORF amplified from pXPR_502 using Q5 polymerase and Gibson assembly performed to obtain an intermediate plasmid now expressing the MS2-P65-HSF1 activator complex from an EF1α promoter. ..

    Over Expression:

    Article Title: CircACVR2A(2-4) regulates stem cell pluripotency by uncoupling CDK-activating kinase functions.
    Article Snippet: .. Short hairpin RNA and circRNA overexpression constructs All human RNA-targeting shRNAs were cloned into pLKO.1puro (Addgene, #8453), which was sequentially digested with Eco RI-HF and Age I-HF (New England Biolabs, Ipswich, MA, USA) in 1 × CutSmart buffer at 37◦C for 1 h and gel- academ ic.oup.com /nar/article/54/19/gkag964/8913154 by guest on 19 O ctober 2026 ..



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