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Broad Institute Inc haploview software
Haploview Software, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/graphit+computer+software/haploview+software/pm29607327-54-14-18
Average 90 stars, based on 1 article reviews
haploview software - by Bioz Stars, 2026-10
90/100 stars

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Software:

Article Title: Genetic Background of Acute Heart Rate Response to Exercise
Article Snippet: .. The genotyped SNPs were analysed for HWE structure and linkage disequilibrium (LD) using Haploview software (version 4.2; Broad Institute; Cambridge, MA, USA). ..

Article Title: Research note: Detection of IGF2BP2 gene polymorphism associated with growth and reproduction traits of pigeon
Article Snippet: .. The LD between SNPs and haplotype analysis was calculated using Haploview software (Broad Institute of MIT and Harvard, Cambridge, UK) ( ). .. Association analysis between SNPs and phenotypic traits, as well as haplotypes and phenotypic traits, was conducted by the software SPSS (IBM Corporation, NY) ( ).

Article Title: Research note: Detection of IGF2BP2 gene polymorphism associated with growth and reproduction traits of pigeon.
Article Snippet: .. The LD between SNPs and haplotype analysis was calculated using Haploview software (Broad Institute of MIT and Harvard, Cambridge, UK) (Knaga et al., 2024). .. Association analysis between SNPs and phenotypic traits, as well as haplotypes and phenotypic traits, was conducted by the software SPSS (IBM Corporation, NY) (Zhao et al., 2023).

Article Title: Functional AGXT2 SNP rs180749 variant and depressive symptoms: Baseline data from the Aidai Cohort Study in Japan
Article Snippet: SNPs under study were tested for deviation from Hardy–Weinberg equilibrium using the Chi-squared test. .. Linkage disequilibrium analysis was performed using Haploview software version 4.2 (Broad Institute, Cambridge, MA) (Barrett et al. ). .. Logistic regression analysis was performed to estimate crude odds ratios (ORs) and 95% confidence intervals (CIs) for depressive symptoms relative to the SNPs under investigation, with the reference category being the homozygote of the ancestral allele based on the National Center for Biotechnology Information SNP database.

Article Title: Deciphering the role of a SINE-VNTR-Alu retrotransposon polymorphism as a biomarker of Parkinson's disease progression.
Article Snippet: .. Generation of tagging SNPs for SVA_67 VNTR alleles and bioinformatic genotyping of SVA_67 alleles For the generation of tagging SNPs for SVA_67 VNTR alleles 1, 3 and 4, SNPs for 1Mb surrounding SVA_67 and proxy SNPs for the SVA alleles were uploaded into haploview software (downloaded from the Broad Institute web page http:// www. broad insti tute. org/ scien tific- commu nity/ scien ce/ progr ams/ medic al- and- popul ation- genet ics/ haplo view/ downl oads). ..

Article Title: ACE2 and TMPRSS2 genetic polymorphisms as potential predictors of COVID−19 severity and outcome in females
Article Snippet: .. Testing for linkage disequilibrium (LD) between polymorphisms of the same gene was conducted using Haploview software, version 4.2 (Broad Institute, Cambridge, MA, United States), providing insight into non-random associations between loci. .. Data were analyzed using the statistical program SPSS version 26 (IBM, Armonk, NY, United States).

Article Title: Nerve growth factor gene polymorphisms may be associated with heroin dependence in women but do not mediate specific personality traits.
Article Snippet: Heroin dependence (HD) is a complex disease with a substantial genetic contribution and is associated with traits of impulsivity and specific personality traits.. The neurotrophic factor nerve growth factor (NGF) may mediate the reward processes in HD.. This study aims to investigate whether NGF gene polymorphisms are associated with the co-occurrence of HD and impulsivity/specific personality traits in HD patients.

other:

Article Title: Asociación de la variante genética rs12617656 C/T del gen DPP4 con restenosis intra-stent en población mexicana: estudio de corte
Article Snippet: Haplotypes and linkage disequilibrium analyses (LD, D’) were performed by Haploview version 4.1 software (Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA).

Blocking Assay:

Article Title: Nerve growth factor gene polymorphisms may be associated with heroin dependence in women but do not mediate specific personality traits.
Article Snippet: Heroin dependence (HD) is a complex disease with a substantial genetic contribution and is associated with traits of impulsivity and specific personality traits.. The neurotrophic factor nerve growth factor (NGF) may mediate the reward processes in HD.. This study aims to investigate whether NGF gene polymorphisms are associated with the co-occurrence of HD and impulsivity/specific personality traits in HD patients.



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