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1000genomes phase2 reference genome sequence (hs37d5) version of hg1927  (RStudio)

 
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    Structured Review

    RStudio 1000genomes phase2 reference genome sequence (hs37d5) version of hg1927
    1000genomes Phase2 Reference Genome Sequence (Hs37d5) Version Of Hg1927, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genomic+reference+sequence/1000genomes+phase2+reference+genome+sequence++hs37d5++version+of+hg1927/ppr0375660-149-13-16
    Average 90 stars, based on 1 article reviews
    1000genomes phase2 reference genome sequence (hs37d5) version of hg1927 - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Empirical prediction of variant-activated cryptic splice donors using population-based RNA-Seq data
    Article Snippet: - "We used the 1000genomes Phase2 Reference Genome Sequence (hs37d5) version of hg1927 implemented in RStudio" I would call this "in R"... and you implemented the genome?!

    Article Title: Empirical prediction of variant-associated cryptic-donors with 87% sensitivity and 95% specificity
    Article Snippet: Sequence extraction We used the 1000genomes Phase2 Reference Genome Sequence (hs37d5) version of hg1927 implemented in RStudio to extract a window of (up to) 500nt of genomic sequence centred on the authentic-donor for each variant.

    Article Title: Empirical prediction of variant-activated cryptic splice donors using population-based RNA-Seq data
    Article Snippet: We have clarified in the text: PG 16, Line 879 “If we take the union of SAI and 40K-RNA cryptic-donor predictions (i.e., cryptics predicted by either of the two methods), we accurately predict 2210/2389 (93%) of cryptic-donors (Figure 6Aiii) and inaccurately predict 6% of unused decoy-donors.” R2.5 "We used the 1000genomes Phase2 Reference Genome Sequence (hs37d5) version of hg1927 implemented in RStudio" I would call this "in R"... and you implemented the genome?!

    Extraction:

    Article Title: Empirical prediction of variant-activated cryptic splice donors using population-based RNA-Seq data
    Article Snippet: - "We used the 1000genomes Phase2 Reference Genome Sequence (hs37d5) version of hg1927 implemented in RStudio" I would call this "in R"... and you implemented the genome?!

    Article Title: Empirical prediction of variant-associated cryptic-donors with 87% sensitivity and 95% specificity
    Article Snippet: Sequence extraction We used the 1000genomes Phase2 Reference Genome Sequence (hs37d5) version of hg1927 implemented in RStudio to extract a window of (up to) 500nt of genomic sequence centred on the authentic-donor for each variant.

    Article Title: Empirical prediction of variant-activated cryptic splice donors using population-based RNA-Seq data
    Article Snippet: We have clarified in the text: PG 16, Line 879 “If we take the union of SAI and 40K-RNA cryptic-donor predictions (i.e., cryptics predicted by either of the two methods), we accurately predict 2210/2389 (93%) of cryptic-donors (Figure 6Aiii) and inaccurately predict 6% of unused decoy-donors.” R2.5 "We used the 1000genomes Phase2 Reference Genome Sequence (hs37d5) version of hg1927 implemented in RStudio" I would call this "in R"... and you implemented the genome?!

    Variant Assay:

    Article Title: Empirical prediction of variant-activated cryptic splice donors using population-based RNA-Seq data
    Article Snippet: - "We used the 1000genomes Phase2 Reference Genome Sequence (hs37d5) version of hg1927 implemented in RStudio" I would call this "in R"... and you implemented the genome?!

    Article Title: Empirical prediction of variant-associated cryptic-donors with 87% sensitivity and 95% specificity
    Article Snippet: Sequence extraction We used the 1000genomes Phase2 Reference Genome Sequence (hs37d5) version of hg1927 implemented in RStudio to extract a window of (up to) 500nt of genomic sequence centred on the authentic-donor for each variant.

    Article Title: Empirical prediction of variant-activated cryptic splice donors using population-based RNA-Seq data
    Article Snippet: We have clarified in the text: PG 16, Line 879 “If we take the union of SAI and 40K-RNA cryptic-donor predictions (i.e., cryptics predicted by either of the two methods), we accurately predict 2210/2389 (93%) of cryptic-donors (Figure 6Aiii) and inaccurately predict 6% of unused decoy-donors.” R2.5 "We used the 1000genomes Phase2 Reference Genome Sequence (hs37d5) version of hg1927 implemented in RStudio" I would call this "in R"... and you implemented the genome?!



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