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brassica oleracea reference genome sequence genoscope_brassica_oleracea_boleraceahdem  (Genoscope)

 
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    Genoscope brassica oleracea reference genome sequence genoscope_brassica_oleracea_boleraceahdem
    Brassica Oleracea Reference Genome Sequence Genoscope Brassica Oleracea Boleraceahdem, supplied by Genoscope, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genomic+reference+sequence/brassica+napus+darmor+bzh+reference+genome+v+5/pmc12182320-47-7-12
    Average 90 stars, based on 1 article reviews
    brassica oleracea reference genome sequence genoscope_brassica_oleracea_boleraceahdem - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    other:

    Article Title: Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression
    Article Snippet: Trimmed and filtered RNA-seq reads were aligned to the Brassica napus Darmor-bzh reference genome v:5 ( https://www.genoscope.cns.fr/brassicanapus/data/ ) [ ] using HISAT2 v:2.0.5 [ ] with default values for all parameters.

    Article Title: Genetic and molecular analysis reveals that two major loci and their interaction confer clubroot resistance in canola introgressed from rutabaga.
    Article Snippet: However, in many cases, their physical position based on Brassica_napus_v4.1 (https://www.genoscope.cns. fr/brassicanapus/data/) reference genome is also given in brackets.

    Article Title: Transcriptome reveals the role of ELONGATED HYPOCOTYL 5 in the regulation of glucosinolate metabolism in broccoli
    Article Snippet: The clean reads were aligned to the Brassica oleracea reference genome sequence genoscope_brassica_oleracea_BoleraceaHDEM (Brassicaceae Database) using the Tophat software, permitting one mismatch ( ).

    Article Title: Transcriptome reveals the role of ELONGATED HYPOCOTYL 5 in the regulation of glucosinolate metabolism in broccoli
    Article Snippet: The clean reads were aligned to the Brassica oleracea reference genome sequence genoscope_brassica_oleracea_BoleraceaHDEM (Brassicaceae Database) using the Tophat software, permitting one mismatch (Trapnell et al., 2009).

    Article Title: Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression
    Article Snippet: The trimmed and filtered reads were mapped to the Brassica napus Darmor-bzh reference genome v:5 ( https://www.genoscope.cns.fr/brassicanapus/data/ ) [ ] using HISAT2 v:2.0.5 [ ] with default values for all parameters.

    Software:

    Article Title: Exploration into Natural Variation for Genes Associated with Determinate and Capitulum-like Inflorescence in Brassica napus
    Article Snippet: .. The reads with more than 10% of missing bases and more than 50% of bases with Q-score lower than 10 were filtered, and the clean reads thus obtained were mapped to the Brassica napus reference genome (Genoscope v4.1, http://www.genoscope.cns.fr/brassicanapus/data/) using BWA software [29, 38]. .. SNP-calling and SNP annotation were done using the professional softwares of ANNOVAR and SAM [38, 39], MarkDuplicatePicards (http://sourceforge.net/projects/picard/), GATK [40], SnpEff [41].



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