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whole-genome sequencing  (College of American Pathologists)

 
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    College of American Pathologists whole-genome sequencing
    Whole Genome Sequencing, supplied by College of American Pathologists, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genome+sequence+data/whole+genome+sequence++wgs++data/pmc05722984-45-9-16
    Average 90 stars, based on 1 article reviews
    whole-genome sequencing - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    other:

    Article Title: Demonstrating paths for unlocking the value of cloud genomics through cross cohort analysis
    Article Snippet: Whole genome sequence (WGS) data was generated on consented All of Us participants via a College of American Pathologists (CAP) / Clinical Laboratory Improvement Amendments (CLIA) validated pipeline.

    Article Title: Integration of Next-Generation Sequencing to Treat Acute Lymphoblastic Leukemia with Targetable Lesions: The St. Jude Children’s Research Hospital Approach
    Article Snippet: At study initiation, patients are also offered integrative whole-genome, whole-exome, and whole-transcriptome sequencing, performed in a College of American Pathologists (CAP)/Clinical Laboratory Improvement Amendments-accredited laboratory (Figure ).

    Sequencing:

    Article Title: Nephrotic syndrome: Pretibial epidermolysis bullosa in a patient with CD151 tetraspanin defect: A case report
    Article Snippet: .. Whole genome sequencing (WGS) was performed in a commercial College of American Pathologists/Clinical Laboratory Improvement Amendments-accredited laboratory. .. Illumina HiSeq 4000 sequencers were used for WGS.



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    Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; <t>WGII,</t> <t>whole-genome</t> instability index;ll *, P < 0.05.
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    Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; WGII, whole-genome instability index;ll *, P < 0.05.

    Journal: Molecular Cancer Research

    Article Title: Contrasting Features of Papillary and Chromophobe Renal Cell Carcinoma Revealed by Whole-Genome Sequencing

    doi: 10.1158/1541-7786.MCR-25-0616

    Figure Lengend Snippet: Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; WGII, whole-genome instability index;ll *, P < 0.05.

    Article Snippet: We analyzed whole-genome sequencing data on 164 tumor–normal pairs from the Genomics England 100,000 Genomes Project, providing a comprehensive, high-resolution map of copy number alterations, structural variation, and key global genomic features, including mutational signatures, intratumor heterogeneity, and analysis of extrachromosomal DNA formation.

    Techniques: Sampling, Variant Assay

    Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; WGII, whole-genome instability index;ll *, P < 0.05.

    Journal: Molecular Cancer Research

    Article Title: Contrasting Features of Papillary and Chromophobe Renal Cell Carcinoma Revealed by Whole-Genome Sequencing

    doi: 10.1158/1541-7786.MCR-25-0616

    Figure Lengend Snippet: Summary of clinical correlations adjusted for sex, age of sampling, and stage. A, ChCC ( n = 61) and ( B ) pRCC ( n = 103). CN, copy number; MB, megabase; SNV, single-nucleotide variant; TCRA, T-cell receptor-α; WGII, whole-genome instability index;ll *, P < 0.05.

    Article Snippet: To address this shortcoming, we report the analysis of whole-genome sequencing (WGS) data generated on tumor–normal (T/N) pairs from 164 patients recruited from NHS Genomic Medicine Centres (GMC) across England, as part of the Genomics England 100,000 Genomes Project (100kGP, RRID: SCR_010502; refs , ).

    Techniques: Sampling, Variant Assay